Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0011835

Physical Location & Seq

Genomic Coordinates Reverse (-)

9299805 .. 9300472

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTTGATGGTGATGATTTGCGCCCTAAATCAAAAAACCCTAGGGGCATCCATGCACCCTCATATTTTAATCACATTGGTCCCACAATATCTAGATTCTCTTCCAAAGCCAAACATGCCCACGATCACACACCCTCCCACCTTCTGTTTTCCCACACCACACCAACCCAACCCAATTCATTTCCTTCCCCTCCTCTTTCCCCAAAGGAGCAGCAACAAATTACAACCAATACTACCCACCAGAGAAAACCCCAGTTGCAGATACCAGAAAGAAAAAATGTCTGGGGTTTGGACTTTTAAGAATGGGGTGATTCGCCTGGTCGAAAATCCTCAGGCCGAGACATCTTCCAGGAAGGCTTTGGTGCACTTGCCGAGTGGAAAGGTGGTGTCGTCCTACTCGATGCTCGAGGAAATATTGACGGGCTTAGGGTGGGAGAGGTACTATGGAGGAGACCCCGATCTCTTCCAGTTCCACAAGCGATCTTCGATCGATCTAATCTCTCTCCCCAGTGACTTCTCCAAGTTCAACTCTGTTTACATGTACGATATTGTCATTAAAAACCCCAACATCTTCCACGTTCGGGACACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009909 GO:0009911 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

22.39

Weight (kDa)

9.15

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10625 AT5G24860 AT5G24860 AT5G24860
fragaria_vesca	FvH4_2g30770
malus_domestica	MD08G1131700.v1.1 MD15G1109300.v1.1
prunus_persica	Prupe.1G461600_v2.0.a1
pyrus_communis	pycom08g11030
rosa_chinensis	RchiOBHm_Chr6g0312131
rosa_laevigata	RLG00000010352
rosa_multiflora	Rmu_sc0004065.1_g000006
rosa_roxburghii	Rroxscaffold_7G00157040
rosa_rugosa	Rorug06G0392900
rosa_samantha	Rh6AG509800 Rh6BG520700 Rh6CG526800 Rh6DG512100
rosa_wichuraiana	Rw6G044360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	440, 542
AfiI	CCNNNNNNNGG	1 cut(s)	580
AflIII	ACRYGT	2 cut(s)	537, 585
AgsI	TTSAA	1 cut(s)	526
AjnI	CCWGG	2 cut(s)	315, 347
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	2 cut(s)	332, 444
Alw44I	GTGCAC	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	1 cut(s)	333
ApaLI	GTGCAC	1 cut(s)	362
ApeKI	GCWGC	1 cut(s)	210
AspA2I	CCTAGG	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	22, 319
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	79
AvrII	CCTAGG	1 cut(s)	40
AxyI	CCTNAGG	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	222
BciT130I	CCWGG	2 cut(s)	317, 349
BcoDI	GTCTC	2 cut(s)	332, 444
BfaI	CTAG	2 cut(s)	41, 92
BisI	GCNGC	1 cut(s)	211
BlnI	CCTAGG	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	2 cut(s)	317, 349
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	2 cut(s)	317, 349
BmrI	ACTGGG	2 cut(s)	246, 501
BmsI	GCATC	2 cut(s)	56, 390
BmuI	ACTGGG	2 cut(s)	246, 501
Bpu10I	CCTNAGC	1 cut(s)	424
Bsa29I	ATCGAT	1 cut(s)	489
BsaAI	YACGTR	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse1I	ACTGG	3 cut(s)	252, 466, 507
Bse21I	CCTNAGG	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	317, 349
BseCI	ATCGAT	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	3 cut(s)	252, 466, 507
BseRI	GAGGAG	2 cut(s)	182, 462
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	489
BshFI	GGCC	1 cut(s)	335
BshVI	ATCGAT	1 cut(s)	489
BsiEI	CGRYCG	1 cut(s)	489
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	2 cut(s)	332, 444
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	444
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	5 cut(s)	123, 457, 479, 486, 490
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	1 cut(s)	343
BspDI	ATCGAT	1 cut(s)	489
BspLI	GGNNCC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	444
BsrI	ACTGG	3 cut(s)	252, 466, 507
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	5 cut(s)	123, 457, 479, 486, 490
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	2 cut(s)	317, 349
Bst6I	CTCTTC	2 cut(s)	105, 467
BstBAI	YACGTR	1 cut(s)	588
BstDEI	CTNAG	2 cut(s)	330, 424
BstF5I	GGATG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	5 cut(s)	126, 460, 482, 489, 493
BstMAI	GTCTC	2 cut(s)	332, 444
BstMBI	GATC	5 cut(s)	123, 457, 479, 486, 490
BstMCI	CGRYCG	1 cut(s)	489
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	2 cut(s)	317, 349
BstNSI	RCATGY	2 cut(s)	118, 541
BstSCI	CCNGG	2 cut(s)	315, 347
BstSLI	GKGCMC	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	489
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	335
BsuTUI	ATCGAT	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	514
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	489
Csp6I	GTAC	2 cut(s)	439, 541
CviAII	CATG	3 cut(s)	52, 115, 538
CviJI	RGCY	4 cut(s)	109, 335, 356, 423
CviKI_1	RGCY	4 cut(s)	109, 335, 356, 423
CviQI	GTAC	2 cut(s)	439, 541
DdeI	CTNAG	2 cut(s)	330, 424
DpnI	GATC	5 cut(s)	125, 459, 481, 488, 492
DpnII	GATC	5 cut(s)	123, 457, 479, 486, 490
Eam1104I	CTCTTC	2 cut(s)	105, 467
EarI	CTCTTC	2 cut(s)	105, 467
Eco130I	CCWWGG	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	79
Eco81I	CCTNAGG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	315, 347
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	3 cut(s)	55, 118, 541
FaiI	YATR	5 cut(s)	53, 63, 116, 444, 539
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	3 cut(s)	51, 114, 537
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	2 cut(s)	41, 92
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	55, 118, 541
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	2 cut(s)	95, 310
HphI	GGTGA	2 cut(s)	22, 319
Hpy166II	GTNNAC	2 cut(s)	364, 535
Hpy188III	TCNNGA	2 cut(s)	92, 581
Hpy8I	GTNNAC	2 cut(s)	364, 535
HpyAV	CCTTC	3 cut(s)	151, 194, 346
HpyCH4IV	ACGT	2 cut(s)	576, 587
HpyCH4V	TGCA	3 cut(s)	55, 258, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	2 cut(s)	330, 424
HpySE526I	ACGT	2 cut(s)	576, 587
Hsp92II	CATG	3 cut(s)	55, 118, 541
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	5 cut(s)	123, 457, 479, 486, 490
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	2 cut(s)	56, 390
MaeI	CTAG	2 cut(s)	41, 92
MaeII	ACGT	2 cut(s)	576, 587
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	5 cut(s)	125, 459, 481, 488, 492
MboI	GATC	5 cut(s)	123, 457, 479, 486, 490
MboII	GAAGA	5 cut(s)	92, 336, 454, 474, 562
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	2 cut(s)	174, 218
MnlI	CCTC	8 cut(s)	69, 144, 200, 203, 339, 400, 429, 440
MseI	TTAA	3 cut(s)	68, 297, 555
MspR9I	CCNGG	2 cut(s)	317, 349
MvaI	CCWGG	2 cut(s)	317, 349
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeII	GATC	5 cut(s)	123, 457, 479, 486, 490
NlaIII	CATG	3 cut(s)	55, 118, 541
NlaIV	GGNNCC	1 cut(s)	81
NmeAIII	GCCGAG	2 cut(s)	361, 396
NmuCI	GTSAC	1 cut(s)	509
NspI	RCATGY	2 cut(s)	118, 541
PaeR7I	CTCGAG	1 cut(s)	404
PciI	ACATGT	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	95, 310
PfoI	TCCNGGA	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	212
Ple19I	CGATCG	1 cut(s)	489
Ppu21I	YACGTR	1 cut(s)	588
PscI	ACATGT	1 cut(s)	537
Psp6I	CCWGG	2 cut(s)	315, 347
PspGI	CCWGG	2 cut(s)	315, 347
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	79
PspXI	VCTCGAGB	1 cut(s)	404
PvuI	CGATCG	1 cut(s)	489
RsaI	GTAC	2 cut(s)	440, 542
RsaNI	GTAC	2 cut(s)	439, 541
SaqAI	TTAA	3 cut(s)	68, 297, 555
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	5 cut(s)	123, 457, 479, 486, 490
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	317, 349
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	5 cut(s)	143, 384, 440, 579, 590
SfaNI	GCATC	2 cut(s)	56, 390
Sfr274I	CTCGAG	1 cut(s)	404
SinI	GGWCC	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	2 cut(s)	174, 218
SspI	AATATT	1 cut(s)	414
SspMI	CTAG	2 cut(s)	41, 92
StyD4I	CCNGG	2 cut(s)	315, 347
StyI	CCWWGG	1 cut(s)	40
TaiI	ACGT	2 cut(s)	579, 590
TaqI	TCGA	5 cut(s)	321, 398, 405, 485, 489
TasI	AATT	2 cut(s)	174, 218
TfiI	GAWTC	2 cut(s)	95, 310
Tru1I	TTAA	3 cut(s)	68, 297, 555
Tru9I	TTAA	3 cut(s)	68, 297, 555
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	514
VneI	GTGCAC	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	79
XbaI	TCTAGA	1 cut(s)	91
XceI	RCATGY	2 cut(s)	118, 541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XhoI	CTCGAG	1 cut(s)	404
XmaJI	CCTAGG	1 cut(s)	40
XspI	CTAG	2 cut(s)	41, 92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.