Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011835

Physical Location & Seq

Genomic Coordinates Reverse (-)

7628920 .. 7629240

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1109300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTCTGGGGTTTGGGTTTTCAATAATAATGGGGTGATTCGCCTGGTGGAAAATCCGCAGGCCGAGACATCGACTAGGAGGAAGGCTTTGGTGCACTTGCCGAGTGGGCAGGTGGTGTCGTCCTACTCAACGCTCGAGCAAATATTGACGGGGTTAGGATGGGAGAGGTACTATGGAGGTGATCCCGATCTCTTCCAATTCCACAAGCGATCTTCGATCGATCTAATCTCTCTCCCCAGAGACTTCTCCAAGTTCAACTCTGTTTACATGTACGATATTGTCATTAAAAACCCCAACGTCTTCCACGTTCGGGACGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009909 GO:0009911 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

12.16

Weight (kDa)

8.07

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10625 AT5G24860 AT5G24860 AT5G24860
fragaria_vesca	FvH4_2g30770
malus_domestica	MD08G1131700.v1.1 MD15G1109300.v1.1
prunus_persica	Prupe.1G461600_v2.0.a1
pyrus_communis	pycom08g11030
rosa_chinensis	RchiOBHm_Chr6g0312131
rosa_laevigata	RLG00000010352
rosa_multiflora	Rmu_sc0004065.1_g000006
rosa_roxburghii	Rroxscaffold_7G00157040
rosa_rugosa	Rorug06G0392900
rosa_samantha	Rh6AG509800 Rh6BG520700 Rh6CG526800 Rh6DG512100
rosa_wichuraiana	Rw6G044360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	100
Acc36I	ACCTGC	1 cut(s)	100
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	1 cut(s)	176
AfaI	GTAC	2 cut(s)	170, 272
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	2 cut(s)	267, 315
AgsI	TTSAA	2 cut(s)	22, 256
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	42
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	59, 234
Alw44I	GTGCAC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	60
ApaLI	GTGCAC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	46, 191
AvaI	CYCGRG	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	59, 234
BfaI	CTAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	100
BglI	GCCNNNNNGGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	134
BmgBI	CACGTC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	292
Bsa29I	ATCGAT	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	219
BseGI	GGATG	1 cut(s)	164
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	62
BshVI	ATCGAT	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	2 cut(s)	59, 234
BsnI	GGCC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	5 cut(s)	181, 187, 209, 216, 220
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	62
BspDI	ATCGAT	1 cut(s)	219
BspMI	ACCTGC	1 cut(s)	100
BspPI	GGATC	1 cut(s)	176
BssMI	GATC	5 cut(s)	181, 187, 209, 216, 220
Bst2UI	CCWGG	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	164
BstKTI	GATC	5 cut(s)	184, 190, 212, 219, 223
BstMAI	GTCTC	2 cut(s)	59, 234
BstMBI	GATC	5 cut(s)	181, 187, 209, 216, 220
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	292
Bsu15I	ATCGAT	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	62
BsuTUI	ATCGAT	1 cut(s)	219
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	164
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	60
ClaI	ATCGAT	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	169, 271
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	2 cut(s)	62, 86
CviKI_1	RGCY	2 cut(s)	62, 86
CviQI	GTAC	2 cut(s)	169, 271
DpnI	GATC	5 cut(s)	183, 189, 211, 218, 222
DpnII	GATC	5 cut(s)	181, 187, 209, 216, 220
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	271
FaiI	YATR	2 cut(s)	174, 269
FatI	CATG	1 cut(s)	267
FokI	GGATG	1 cut(s)	171
FspBI	CTAG	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	271
HinfI	GANTC	1 cut(s)	37
HphI	GGTGA	2 cut(s)	46, 191
Hpy166II	GTNNAC	2 cut(s)	94, 265
Hpy188III	TCNNGA	2 cut(s)	185, 311
Hpy8I	GTNNAC	2 cut(s)	94, 265
HpyAV	CCTTC	1 cut(s)	76
HpyCH4IV	ACGT	3 cut(s)	297, 306, 315
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpySE526I	ACGT	3 cut(s)	297, 306, 315
Hsp92II	CATG	1 cut(s)	271
Kzo9I	GATC	5 cut(s)	181, 187, 209, 216, 220
LpnPI	CCDG	5 cut(s)	29, 44, 56, 95, 250
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	3 cut(s)	297, 306, 315
MalI	GATC	5 cut(s)	183, 189, 211, 218, 222
MboI	GATC	5 cut(s)	181, 187, 209, 216, 220
MboII	GAAGA	3 cut(s)	184, 204, 292
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	197
MnlI	CCTC	3 cut(s)	72, 159, 170
MseI	TTAA	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeII	GATC	5 cut(s)	181, 187, 209, 216, 220
NlaIII	CATG	1 cut(s)	271
NmeAIII	GCCGAG	2 cut(s)	88, 126
NspI	RCATGY	1 cut(s)	271
PaeR7I	CTCGAG	1 cut(s)	134
PaqCI	CACCTGC	1 cut(s)	100
PciI	ACATGT	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	2 cut(s)	303, 312
PfeI	GAWTC	1 cut(s)	37
Ple19I	CGATCG	1 cut(s)	219
PscI	ACATGT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspXI	VCTCGAGB	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	219
RsaI	GTAC	2 cut(s)	170, 272
RsaNI	GTAC	2 cut(s)	169, 271
SaqAI	TTAA	1 cut(s)	285
Sau3AI	GATC	5 cut(s)	181, 187, 209, 216, 220
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	6 cut(s)	114, 170, 181, 300, 309, 318
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	1 cut(s)	56
SspI	AATATT	1 cut(s)	144
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	42
TaiI	ACGT	3 cut(s)	300, 309, 318
TaqI	TCGA	4 cut(s)	71, 135, 215, 219
TasI	AATT	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
VneI	GTGCAC	1 cut(s)	92
XceI	RCATGY	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	134
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.