Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014016

Physical Location & Seq

Genomic Coordinates Forward (+)

8856917 .. 8858476

Gene Structure 1560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGTCGTTTCTCCAGAGACTAGTAGATCCCAGGAAGAATTTCTTAGCTCGTATGCATATGAAGTCTGTTTCTAATCGCCTCCGCAGATACGGTCTTAGATACGACGATCTTTATGATCCTTTGTATGATTTGGATATTAAAGAAGCTCTTAATCGTTTACCGAGAGAGATTGTTGATGCTCGGAACCAGCGTCTTATGCGTGCAATGGATCTTTCTATGAAACATGAATACCTCCCAGATAATCTTCAGGCAGTGCAGACTCCATTCAGGAGCTACCTCCAAGACATGTTGGCTCTTGTGAAGCGGGAGAGAGCTGAGAGAGAGGCTTTGGGAGCTTTACCTCTCTACCAAAGAACCATTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0005773 GO:0005774 GO:0006091 GO:0006119 GO:0006122 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016043 GO:0016310 GO:0017004 GO:0017062 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022607 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033108 GO:0034551 GO:0034622 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0070069 GO:0070469 GO:0071704 GO:0071840 GO:0072521 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_14kD

Protein Analysis

122

Amino Acids

14.6

Weight (kDa)

9.84

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_14kD	PF02271	16 - 109	4.4e-24	Ubiquinol-cytochrome C reductase complex 14kD subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32470 AT5G25450
fragaria_vesca	FvH4_2g29690
malus_domestica	MD08G1143000.v1.1 MD15G1119900.v1.1
prunus_persica	Prupe.1G472700_v2.0.a1
pyrus_communis	pycom08g12170 pycom15g10800
rosa_chinensis	RchiOBHm_Chr6g0298671
rosa_laevigata	RLG00000011493
rosa_multiflora	Rmu_sc0008099.1_g000004 Rmu_sc0008142.1_g000004
rosa_roxburghii	Rroxscaffold_7G00169410
rosa_rugosa	Rorug06G0282500
rosa_samantha	Rh6BG401500 Rh6CG407400
rosa_wichuraiana	Rw6G034420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	85, 307
AclWI	GGATC	3 cut(s)	23, 113, 219
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	288
AhlI	ACTAGT	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	1 cut(s)	345
AluBI	AGCT	5 cut(s)	50, 149, 276, 317, 338
AluI	AGCT	5 cut(s)	50, 149, 276, 317, 338
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	3 cut(s)	23, 113, 219
ApoI	RAATTY	1 cut(s)	40
Asp700I	GAANNNNTTC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	13
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	13
Bsp143I	GATC	4 cut(s)	28, 109, 118, 211
BspACI	CCGC	2 cut(s)	85, 307
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	188
BspPI	GGATC	3 cut(s)	23, 113, 219
BsrDI	GCAATG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	4 cut(s)	28, 109, 118, 211
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	3 cut(s)	46, 98, 318
BstKTI	GATC	4 cut(s)	31, 112, 121, 214
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	4 cut(s)	28, 109, 118, 211
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 335
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	32
BstX2I	RGATCY	2 cut(s)	28, 211
BstYI	RGATCY	2 cut(s)	28, 211
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	204
CseI	GACGC	1 cut(s)	182
CviAII	CATG	2 cut(s)	227, 289
CviJI	RGCY	7 cut(s)	50, 149, 276, 296, 317, 329, 338
CviKI_1	RGCY	7 cut(s)	50, 149, 276, 296, 317, 329, 338
DdeI	CTNAG	3 cut(s)	46, 98, 318
DpnI	GATC	4 cut(s)	30, 111, 120, 213
DpnII	GATC	4 cut(s)	28, 109, 118, 211
Eco57I	CTGAAG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	32
EcoT22I	ATGCAT	1 cut(s)	60
FaeI	CATG	2 cut(s)	230, 292
FaiI	YATR	9 cut(s)	56, 60, 62, 117, 129, 200, 221, 228, 290
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 135, 167
FatI	CATG	2 cut(s)	226, 288
FauI	CCCGC	1 cut(s)	300
FauNDI	CATATG	1 cut(s)	60
FspBI	CTAG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	230, 292
HinfI	GANTC	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	2 cut(s)	16, 271
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	2 cut(s)	10, 110
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	58, 206, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 335
HpyF3I	CTNAG	3 cut(s)	46, 98, 318
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	230, 292
Kzo9I	GATC	4 cut(s)	28, 109, 118, 211
LmnI	GCTCC	2 cut(s)	273, 335
LpnPI	CCDG	7 cut(s)	19, 29, 46, 203, 236, 252, 256
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	23
MalI	GATC	4 cut(s)	30, 111, 120, 213
MboI	GATC	4 cut(s)	28, 109, 118, 211
MboII	GAAGA	2 cut(s)	49, 239
MflI	RGATCY	2 cut(s)	28, 211
MluCI	AATT	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	5 cut(s)	92, 245, 290, 319, 354
Mph1103I	ATGCAT	1 cut(s)	60
MroXI	GAANNNNTTC	1 cut(s)	41
MseI	TTAA	3 cut(s)	141, 153, 367
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	199, 335
NdeI	CATATG	1 cut(s)	60
NdeII	GATC	4 cut(s)	28, 109, 118, 211
NlaIII	CATG	2 cut(s)	230, 292
NlaIV	GGNNCC	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	60
NspI	RCATGY	1 cut(s)	292
PciI	ACATGT	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	41
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PscI	ACATGT	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	188
PsuI	RGATCY	2 cut(s)	28, 211
SaqAI	TTAA	3 cut(s)	141, 153, 367
Sau3AI	GATC	4 cut(s)	28, 109, 118, 211
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	8 cut(s)	52, 151, 237, 278, 282, 319, 340, 346
SfaNI	GCATC	1 cut(s)	169
SpeI	ACTAGT	1 cut(s)	22
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	2 cut(s)	85, 307
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	95
TasI	AATT	1 cut(s)	40
Tru1I	TTAA	3 cut(s)	141, 153, 367
Tru9I	TTAA	3 cut(s)	141, 153, 367
TscAI	CASTG	1 cut(s)	261
TspDTI	ATGAA	3 cut(s)	77, 236, 243
TspRI	CASTG	1 cut(s)	261
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.