Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014016

Physical Location & Seq

Genomic Coordinates Reverse (-)

43058143 .. 43060932

Gene Structure 2790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0282500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCAGCCAAAGAACCAGAGATCATCAGAGACAAGAACCAGATGAGGAACTGGTCGAGGGCCATGAGATCCCAAGGCAAAACCATAGGCCTAGTACCCACCATGGGCTACCTCCACGACGGCCACCTTTCCCTCATCAGAGAAGCCCACGATCACTCCGACGTCATCGTCGTCTCCATCTACGTAAACCCAGGTCAGTTCTCTCCCACCGAAGACCTCTCCACATACCCATCTGATTTCCACGGCGATATCCAAAAGCTGAGGGCTGTTCCTGGTGGCGTTGATGTTGTTTTCAATCCTCACAATCTCTACGACTATGGAACCAACAGGAGGTCGTCGGTGAGTAATGGTGAAGGGGCAAAATCGGTTTCTTGTGTGGAGGAGAAGGGGTTGGGGCATGAGACATGGGTTAGAGTTGAGACATTGGAGCAGGGTATGTGTGGCAAGAGTAGGCCTGTGTTTTTCAGAGGGGTTGCGACTGTTGTCACCAAGTTGTTTAACATAGTCGACCCTGATGTTGCTCTGTTTGGGAAGAAGGATTATCAGCAATGGCGGATTATTCAGCGACTGGTTCGGGATCTTGATTTTTCCATTAGAGTCATTGGTTCTGAGGTAGTGCGTGAAAACGATGGCCTGGCAATGAGTTCGCGAAATGTGCGCCTCTCACCTGAAGAACGGGAAAAGGCATTGTCTATAAACAAGTCACTGTCAAGAGCTAGGTTTTCTGCAGAAAAGGGTCTAATTAGATGTAAAGAATTAACAAATTCAGTCATCCAAGCGATCAATGAAGCTGGCGGAAGGGTTGATTATGCAGAGATTGTAGACCAAGAAAGTCTGGAGCCAGTTGAAGAAATAAGAAGTCCTGTTGTGTTCTGTGTTGCTGCTTGGTTTGGAAAGGTCAGATTGATAGATAACATGGAGATCAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0005773 GO:0005774 GO:0006091 GO:0006119 GO:0006122 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016043 GO:0016310 GO:0017004 GO:0017062 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022607 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033108 GO:0034551 GO:0034622 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0070069 GO:0070469 GO:0071704 GO:0071840 GO:0072521 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_14kD

Protein Analysis

310

Amino Acids

34.79

Weight (kDa)

6.41

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pantoate_ligase	PF02569	8 - 306	5.7e-98	Pantoate-beta-alanine ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32470 AT5G25450
fragaria_vesca	FvH4_2g29690
malus_domestica	MD08G1143000.v1.1 MD15G1119900.v1.1
prunus_persica	Prupe.1G472700_v2.0.a1
pyrus_communis	pycom08g12170 pycom15g10800
rosa_chinensis	RchiOBHm_Chr6g0298671
rosa_laevigata	RLG00000011493
rosa_multiflora	Rmu_sc0008099.1_g000004 Rmu_sc0008142.1_g000004
rosa_roxburghii	Rroxscaffold_7G00169410
rosa_rugosa	Rorug06G0282500
rosa_samantha	Rh6BG401500 Rh6CG407400
rosa_wichuraiana	Rw6G034420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	1 cut(s)	165
AccI	GTMKAC	2 cut(s)	507, 822
AccII	CGCG	1 cut(s)	649
AciI	CCGC	2 cut(s)	553, 795
AclWI	GGATC	2 cut(s)	63, 585
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	763
AcuI	CTGAAG	1 cut(s)	690
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	104, 330
AgsI	TTSAA	2 cut(s)	295, 848
AjnI	CCWGG	3 cut(s)	190, 271, 633
AluBI	AGCT	3 cut(s)	259, 716, 791
AluI	AGCT	3 cut(s)	259, 716, 791
Alw26I	GTCTC	4 cut(s)	24, 178, 395, 413
AlwI	GGATC	2 cut(s)	63, 585
AlwNI	CAGNNNCTG	1 cut(s)	568
AoxI	GGCC	5 cut(s)	60, 88, 121, 452, 631
ApeKI	GCWGC	2 cut(s)	5, 881
ApoI	RAATTY	1 cut(s)	763
AspLEI	GCGC	1 cut(s)	660
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	4 cut(s)	352, 362, 478, 657
BbsI	GAAGAC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	17, 868
BccI	CCATC	3 cut(s)	185, 238, 623
BceAI	ACGGC	2 cut(s)	136, 259
BcgI	CGANNNNNNTGC	2 cut(s)	627, 661
BciT130I	CCWGG	3 cut(s)	192, 273, 635
BcoDI	GTCTC	4 cut(s)	24, 178, 395, 413
BfaI	CTAG	2 cut(s)	92, 717
BfmI	CTRYAG	1 cut(s)	726
BisI	GCNGC	2 cut(s)	6, 882
BlsI	GCNGC	2 cut(s)	7, 883
Bme1390I	CCNGG	3 cut(s)	192, 273, 635
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	322, 840
BmrFI	CCNGG	3 cut(s)	192, 273, 635
BoxI	GACNNNNGTC	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	857
Bpu10I	CCTNAGC	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	4 cut(s)	73, 102, 190, 241
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 374, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 330
Bse1I	ACTGG	3 cut(s)	56, 573, 842
Bse3DI	GCAATG	2 cut(s)	554, 645
BseBI	CCWGG	3 cut(s)	192, 273, 635
BseDI	CCNNGG	4 cut(s)	73, 102, 190, 241
BseGI	GGATG	1 cut(s)	771
BseLI	CCNNNNNNNGG	2 cut(s)	104, 330
BseMI	GCAATG	2 cut(s)	554, 645
BseMII	CTCAG	2 cut(s)	251, 600
BseNI	ACTGG	3 cut(s)	56, 573, 842
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	17, 868
Bsh1236I	CGCG	1 cut(s)	649
BshFI	GGCC	5 cut(s)	62, 90, 123, 454, 633
BslI	CCNNNNNNNGG	2 cut(s)	104, 330
BsmAI	GTCTC	4 cut(s)	24, 178, 395, 413
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	5 cut(s)	62, 90, 123, 454, 633
Bsp143I	GATC	6 cut(s)	21, 68, 151, 577, 780, 921
Bsp19I	CCATGG	1 cut(s)	102
Bsp68I	TCGCGA	1 cut(s)	649
BspACI	CCGC	2 cut(s)	553, 795
BspANI	GGCC	5 cut(s)	62, 90, 123, 454, 633
BspCNI	CTCAG	2 cut(s)	252, 601
BspFNI	CGCG	1 cut(s)	649
BspLI	GGNNCC	2 cut(s)	322, 840
BspMAI	CTGCAG	1 cut(s)	730
BspPI	GGATC	2 cut(s)	63, 585
BsrDI	GCAATG	2 cut(s)	554, 645
BsrI	ACTGG	3 cut(s)	56, 573, 842
BssECI	CCNNGG	4 cut(s)	73, 102, 190, 241
BssMI	GATC	6 cut(s)	21, 68, 151, 577, 780, 921
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	2 cut(s)	73, 102
Bst2UI	CCWGG	3 cut(s)	192, 273, 635
Bst4CI	ACNGT	2 cut(s)	481, 708
BstACI	GRCGYC	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	793
BstDEI	CTNAG	2 cut(s)	260, 609
BstDSI	CCRYGG	2 cut(s)	102, 241
BstF5I	GGATG	1 cut(s)	771
BstFNI	CGCG	1 cut(s)	649
BstHHI	GCGC	1 cut(s)	660
BstKTI	GATC	6 cut(s)	24, 71, 154, 580, 783, 924
BstMAI	GTCTC	4 cut(s)	24, 178, 395, 413
BstMBI	GATC	6 cut(s)	21, 68, 151, 577, 780, 921
BstMWI	GCNNNNNNNGC	1 cut(s)	655
BstNI	CCWGG	3 cut(s)	192, 273, 635
BstPAI	GACNNNNGTC	1 cut(s)	482
BstSCI	CCNGG	3 cut(s)	190, 271, 633
BstSFI	CTRYAG	1 cut(s)	726
BstSNI	TACGTA	1 cut(s)	184
BstUI	CGCG	1 cut(s)	649
BstV1I	GCAGC	2 cut(s)	17, 868
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	2 cut(s)	68, 577
BstYI	RGATCY	2 cut(s)	68, 577
BsuRI	GGCC	5 cut(s)	62, 90, 123, 454, 633
BtgI	CCRYGG	2 cut(s)	102, 241
BtsCI	GGATG	1 cut(s)	771
BtsIMutI	CAGTG	1 cut(s)	704
BtuMI	TCGCGA	1 cut(s)	649
Cac8I	GCNNGC	1 cut(s)	793
CaiI	CAGNNNCTG	1 cut(s)	568
CfoI	GCGC	1 cut(s)	660
Cfr13I	GGNCC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	5 cut(s)	64, 103, 398, 405, 916
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	2 cut(s)	260, 609
DpnI	GATC	6 cut(s)	23, 70, 153, 579, 782, 923
DpnII	GATC	6 cut(s)	21, 68, 151, 577, 780, 921
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	121
EciI	GGCGGA	2 cut(s)	568, 810
Eco105I	TACGTA	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	73, 102
Eco147I	AGGCCT	2 cut(s)	90, 454
Eco32I	GATATC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	690
EcoRII	CCWGG	3 cut(s)	190, 271, 633
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	73, 102
ErhI	CCWWGG	2 cut(s)	73, 102
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	5 cut(s)	67, 106, 401, 408, 919
FatI	CATG	5 cut(s)	63, 102, 397, 404, 915
FauNDI	CATATG	1 cut(s)	929
FblI	GTMKAC	2 cut(s)	507, 822
Fnu4HI	GCNGC	2 cut(s)	6, 882
FokI	GGATG	1 cut(s)	758
Fsp4HI	GCNGC	2 cut(s)	6, 882
FspBI	CTAG	2 cut(s)	92, 717
GlaI	GCGC	1 cut(s)	659
GluI	GCNGC	2 cut(s)	6, 882
GsuI	CTGGAG	1 cut(s)	857
HaeIII	GGCC	5 cut(s)	62, 90, 123, 454, 633
HhaI	GCGC	1 cut(s)	660
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	5 cut(s)	67, 106, 401, 408, 919
Hin6I	GCGC	1 cut(s)	658
HinP1I	GCGC	1 cut(s)	658
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	1 cut(s)	597
HphI	GGTGA	4 cut(s)	352, 362, 478, 657
Hpy166II	GTNNAC	3 cut(s)	187, 508, 823
Hpy188I	TCNGA	7 cut(s)	29, 140, 160, 235, 467, 610, 902
Hpy188III	TCNNGA	5 cut(s)	575, 581, 648, 711, 836
Hpy8I	GTNNAC	3 cut(s)	187, 508, 823
Hpy99I	CGWCG	4 cut(s)	122, 164, 173, 340
HpyAV	CCTTC	4 cut(s)	347, 379, 529, 792
HpyCH4III	ACNGT	2 cut(s)	481, 708
HpyCH4IV	ACGT	2 cut(s)	162, 183
HpyCH4V	TGCA	2 cut(s)	728, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	655
HpyF3I	CTNAG	2 cut(s)	260, 609
HpySE526I	ACGT	2 cut(s)	162, 183
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	5 cut(s)	67, 106, 401, 408, 919
HspAI	GCGC	1 cut(s)	658
Kzo9I	GATC	6 cut(s)	21, 68, 151, 577, 780, 921
LmnI	GCTCC	2 cut(s)	427, 838
Lsp1109I	GCAGC	2 cut(s)	17, 868
MaeI	CTAG	2 cut(s)	92, 717
MaeII	ACGT	2 cut(s)	162, 183
MaeIII	GTNAC	2 cut(s)	484, 702
MalI	GATC	6 cut(s)	23, 70, 153, 579, 782, 923
MboI	GATC	6 cut(s)	21, 68, 151, 577, 780, 921
MboII	GAAGA	4 cut(s)	224, 544, 683, 860
MflI	RGATCY	2 cut(s)	68, 577
MluCI	AATT	3 cut(s)	741, 755, 763
MlyI	GAGTC	1 cut(s)	606
MmeI	TCCRAC	1 cut(s)	183
MseI	TTAA	2 cut(s)	498, 758
MspR9I	CCNGG	3 cut(s)	192, 273, 635
MvaI	CCWGG	3 cut(s)	192, 273, 635
MvnI	CGCG	1 cut(s)	649
MwoI	GCNNNNNNNGC	1 cut(s)	655
NcoI	CCATGG	1 cut(s)	102
NdeI	CATATG	1 cut(s)	929
NdeII	GATC	6 cut(s)	21, 68, 151, 577, 780, 921
NlaIII	CATG	5 cut(s)	67, 106, 401, 408, 919
NlaIV	GGNNCC	2 cut(s)	322, 840
NmuCI	GTSAC	2 cut(s)	484, 702
NruI	TCGCGA	1 cut(s)	649
PceI	AGGCCT	2 cut(s)	90, 454
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 168
PkrI	GCNGC	2 cut(s)	7, 883
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
Ppu21I	YACGTR	1 cut(s)	184
PshAI	GACNNNNGTC	1 cut(s)	482
Psp6I	CCWGG	3 cut(s)	190, 271, 633
PspGI	CCWGG	3 cut(s)	190, 271, 633
PspN4I	GGNNCC	2 cut(s)	322, 840
PspPI	GGNCC	1 cut(s)	60
PstI	CTGCAG	1 cut(s)	730
PstNI	CAGNNNCTG	1 cut(s)	568
PsuI	RGATCY	2 cut(s)	68, 577
RruI	TCGCGA	1 cut(s)	649
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SalI	GTCGAC	1 cut(s)	506
SaqAI	TTAA	2 cut(s)	498, 758
SatI	GCNGC	2 cut(s)	6, 882
Sau3AI	GATC	6 cut(s)	21, 68, 151, 577, 780, 921
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	606
ScrFI	CCNGG	3 cut(s)	192, 273, 635
SfcI	CTRYAG	1 cut(s)	726
SnaBI	TACGTA	1 cut(s)	184
Sse9I	AATT	3 cut(s)	741, 755, 763
SseBI	AGGCCT	2 cut(s)	90, 454
SsiI	CCGC	2 cut(s)	553, 795
SspMI	CTAG	2 cut(s)	92, 717
StuI	AGGCCT	2 cut(s)	90, 454
StyD4I	CCNGG	3 cut(s)	190, 271, 633
StyI	CCWWGG	2 cut(s)	73, 102
TaaI	ACNGT	2 cut(s)	481, 708
TaiI	ACGT	2 cut(s)	165, 186
TaqI	TCGA	2 cut(s)	56, 507
TasI	AATT	3 cut(s)	741, 755, 763
Tru1I	TTAA	2 cut(s)	498, 758
Tru9I	TTAA	2 cut(s)	498, 758
TscAI	CASTG	1 cut(s)	711
TseFI	GTSAC	2 cut(s)	484, 702
TseI	GCWGC	2 cut(s)	5, 881
Tsp45I	GTSAC	2 cut(s)	484, 702
TspDTI	ATGAA	1 cut(s)	801
TspRI	CASTG	1 cut(s)	711
XapI	RAATTY	1 cut(s)	763
XmiI	GTMKAC	2 cut(s)	507, 822
XspI	CTAG	2 cut(s)	92, 717
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.