Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014016

Physical Location & Seq

Genomic Coordinates Forward (+)

8631963 .. 8634955

Gene Structure 2993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1119900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGTCGTTGCTGAAATCTTTGGTGGATCCAAGGACGAACTGGTTCGCCCGCCAGCACATGAAGGCCGTCTCCCAGCGCCTCCGCCATTACGGGCTTCGATACGATGATCTGTACGATCCCTACTACGATTTGGACATCAAGGAGGCTCTGAGTCGTCTGCCGAGGGAGATTGTGGACGCTCGTAACCAGCGTCTCAAGCGCGCCATGGACCTCTCCATGAAGCACGAGTACCTCCCCGACCATCTTCAGGCACAGCAAACACCATTCAGGAGCTACCTTCAGGAAATGCTGACTCTGGTGAAGAAGGAAAGCGCAGAGCGTGAGTCTTTGGGAGCTTTGCCACTCTATCAGCGCACCATTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0005773 GO:0005774 GO:0006091 GO:0006119 GO:0006122 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016043 GO:0016310 GO:0017004 GO:0017062 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022607 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033108 GO:0034551 GO:0034622 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0070069 GO:0070469 GO:0071704 GO:0071840 GO:0072521 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_14kD

Protein Analysis

123

Amino Acids

14.55

Weight (kDa)

9.39

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_14kD	PF02271	14 - 109	1.1e-25	Ubiquinol-cytochrome C reductase complex 14kD subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32470 AT5G25450
fragaria_vesca	FvH4_2g29690
malus_domestica	MD08G1143000.v1.1 MD15G1119900.v1.1
prunus_persica	Prupe.1G472700_v2.0.a1
pyrus_communis	pycom08g12170 pycom15g10800
rosa_chinensis	RchiOBHm_Chr6g0298671
rosa_laevigata	RLG00000011493
rosa_multiflora	Rmu_sc0008099.1_g000004 Rmu_sc0008142.1_g000004
rosa_roxburghii	Rroxscaffold_7G00169410
rosa_rugosa	Rorug06G0282500
rosa_samantha	Rh6BG401500 Rh6CG407400
rosa_wichuraiana	Rw6G034420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AciI	CCGC	2 cut(s)	52, 85
AclWI	GGATC	3 cut(s)	23, 36, 113
AcuI	CTGAAG	2 cut(s)	233, 266
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	116, 233
AfiI	CCNNNNNNNGG	1 cut(s)	250
AluBI	AGCT	2 cut(s)	276, 338
AluI	AGCT	2 cut(s)	276, 338
Alw26I	GTCTC	2 cut(s)	76, 200
AlwI	GGATC	3 cut(s)	23, 36, 113
AoxI	GGCC	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	5 cut(s)	81, 204, 206, 317, 357
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BauI	CACGAG	1 cut(s)	227
BccI	CCATC	1 cut(s)	252
BceAI	ACGGC	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	76, 200
BfoI	RGCGCY	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	32, 164, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	47
BseDI	CCNNGG	3 cut(s)	32, 164, 207
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	47
BsePI	GCGCGC	1 cut(s)	202
BseYI	CCCAGC	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	2 cut(s)	76, 200
BsmBI	CGTCTC	2 cut(s)	76, 200
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	28, 109, 118
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	2 cut(s)	52, 85
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	3 cut(s)	23, 36, 113
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	32, 164, 207
BssHII	GCGCGC	1 cut(s)	202
BssMI	GATC	3 cut(s)	28, 109, 118
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	2 cut(s)	32, 207
Bst2BI	CACGAG	1 cut(s)	227
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	52, 56, 204
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	5 cut(s)	81, 204, 206, 317, 357
BstKTI	GATC	3 cut(s)	31, 112, 121
BstMAI	GTCTC	2 cut(s)	76, 200
BstMBI	GATC	3 cut(s)	28, 109, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstUI	CGCG	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	207
Cac8I	GCNNGC	3 cut(s)	52, 56, 204
CfoI	GCGC	5 cut(s)	81, 204, 206, 317, 357
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	2 cut(s)	182, 188
Csp6I	GTAC	2 cut(s)	115, 232
CviAII	CATG	3 cut(s)	61, 208, 220
CviJI	RGCY	5 cut(s)	68, 97, 149, 276, 338
CviKI_1	RGCY	5 cut(s)	68, 97, 149, 276, 338
CviQI	GTAC	2 cut(s)	115, 232
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	3 cut(s)	30, 111, 120
DpnII	GATC	3 cut(s)	28, 109, 118
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	2 cut(s)	32, 207
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	233, 266
EcoT14I	CCWWGG	2 cut(s)	32, 207
ErhI	CCWWGG	2 cut(s)	32, 207
Esp3I	CGTCTC	2 cut(s)	76, 200
FaeI	CATG	3 cut(s)	64, 211, 223
FaiI	YATR	4 cut(s)	62, 209, 221, 367
FatI	CATG	3 cut(s)	60, 207, 219
FauI	CCCGC	1 cut(s)	59
GlaI	GCGC	5 cut(s)	80, 203, 205, 316, 356
GsaI	CCCAGC	1 cut(s)	79
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	68
HgaI	GACGC	2 cut(s)	182, 188
HhaI	GCGC	5 cut(s)	81, 204, 206, 317, 357
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	64, 211, 223
Hin6I	GCGC	5 cut(s)	79, 202, 204, 315, 355
HinP1I	GCGC	5 cut(s)	79, 202, 204, 315, 355
HinfI	GANTC	3 cut(s)	154, 295, 326
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	2 cut(s)	271, 284
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	58, 290, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	1 cut(s)	152
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	64, 211, 223
HspAI	GCGC	5 cut(s)	79, 202, 204, 315, 355
Kzo9I	GATC	3 cut(s)	28, 109, 118
LmnI	GCTCC	2 cut(s)	273, 335
LpnPI	CCDG	8 cut(s)	28, 68, 89, 203, 236, 256, 269, 284
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	3 cut(s)	30, 111, 120
MboI	GATC	3 cut(s)	28, 109, 118
MboII	GAAGA	2 cut(s)	239, 316
MflI	RGATCY	1 cut(s)	28
MlyI	GAGTC	3 cut(s)	163, 289, 335
MnlI	CCTC	5 cut(s)	92, 139, 159, 224, 245
MroXI	GAANNNNTTC	1 cut(s)	44
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	3 cut(s)	28, 109, 118
NlaIII	CATG	3 cut(s)	64, 211, 223
NlaIV	GGNNCC	1 cut(s)	30
NmeAIII	GCCGAG	1 cut(s)	189
PauI	GCGCGC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	44
PleI	GAGTC	3 cut(s)	162, 289, 334
PpsI	GAGTC	3 cut(s)	162, 289, 334
PspFI	CCCAGC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	28
PteI	GCGCGC	1 cut(s)	202
RsaI	GTAC	2 cut(s)	116, 233
RsaNI	GTAC	2 cut(s)	115, 232
Sau3AI	GATC	3 cut(s)	28, 109, 118
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	3 cut(s)	163, 289, 335
SetI	ASST	5 cut(s)	216, 237, 278, 282, 340
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SsiI	CCGC	2 cut(s)	52, 85
StyI	CCWWGG	2 cut(s)	32, 207
TaqI	TCGA	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	77, 236
VpaK11BI	GGWCC	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.