Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014016

Physical Location & Seq

Genomic Coordinates Reverse (-)

59283203 .. 59284922

Gene Structure 1720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG407400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGTCGTTTTTGCAGTCGTTCATAGATCCAAGGAAGAACTGGTTCGCCCGCCAGCACATGAAGGCAATCTCCACGCGCCTCCGTCATTACGGGCTTCGATACGACGATCTGTACGATCCCTACTACGATTTGGATATCAAGGAGGCTCTGCATCGGCTGCCCAGAGAGATAGTCGACGCGCGCAACCAGCGTTTGAAGCGCGCCATGGACCTCTCCATGAAGCACGAGTACCTGCCCGAAGATCTTCAGGCTATGCAAACTCCATTCAGAAGTTACCTTCAAGAAATGCTGGCTCTGGTGAAGAGGGAAAGGGCAGAGCGTGAGGCTTTGGGAGCTCTGCCACTCTATCAGCGCACCATTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0005773 GO:0005774 GO:0006091 GO:0006119 GO:0006122 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016043 GO:0016310 GO:0017004 GO:0017062 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022607 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033108 GO:0034551 GO:0034622 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0070069 GO:0070469 GO:0071704 GO:0071840 GO:0072521 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_14kD

Protein Analysis

122

Amino Acids

14.74

Weight (kDa)

9.43

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_14kD	PF02271	5 - 109	1.3e-25	Ubiquinol-cytochrome C reductase complex 14kD subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32470 AT5G25450
fragaria_vesca	FvH4_2g29690
malus_domestica	MD08G1143000.v1.1 MD15G1119900.v1.1
prunus_persica	Prupe.1G472700_v2.0.a1
pyrus_communis	pycom08g12170 pycom15g10800
rosa_chinensis	RchiOBHm_Chr6g0298671
rosa_laevigata	RLG00000011493
rosa_multiflora	Rmu_sc0008099.1_g000004 Rmu_sc0008142.1_g000004
rosa_roxburghii	Rroxscaffold_7G00169410
rosa_rugosa	Rorug06G0282500
rosa_samantha	Rh6BG401500 Rh6CG407400
rosa_wichuraiana	Rw6G034420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	4 cut(s)	79, 182, 184, 204
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	2 cut(s)	23, 113
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	116, 233
AgsI	TTSAA	2 cut(s)	199, 284
AluBI	AGCT	1 cut(s)	338
AluI	AGCT	1 cut(s)	338
Alw21I	GWGCWC	1 cut(s)	340
AlwI	GGATC	2 cut(s)	23, 113
ApeKI	GCWGC	1 cut(s)	160
Asp700I	GAANNNNTTC	2 cut(s)	44, 246
AspLEI	GCGC	6 cut(s)	81, 184, 186, 204, 206, 357
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	340
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BauI	CACGAG	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	243
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmsI	GCATC	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	32, 207
Bse1I	ACTGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	32, 207
BseNI	ACTGG	1 cut(s)	47
BsePI	GCGCGC	2 cut(s)	182, 202
BseXI	GCAGC	1 cut(s)	147
Bsh1236I	CGCG	4 cut(s)	79, 182, 184, 204
BsiHKAI	GWGCWC	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	4 cut(s)	28, 109, 118, 244
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	1 cut(s)	52
BspFNI	CGCG	4 cut(s)	79, 182, 184, 204
BspMI	ACCTGC	1 cut(s)	243
BspPI	GGATC	2 cut(s)	23, 113
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	32, 207
BssHII	GCGCGC	2 cut(s)	182, 202
BssMI	GATC	4 cut(s)	28, 109, 118, 244
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	2 cut(s)	32, 207
Bst2BI	CACGAG	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstC8I	GCNNGC	5 cut(s)	52, 56, 184, 204, 294
BstDSI	CCRYGG	1 cut(s)	207
BstFNI	CGCG	4 cut(s)	79, 182, 184, 204
BstHHI	GCGC	6 cut(s)	81, 184, 186, 204, 206, 357
BstKTI	GATC	4 cut(s)	31, 112, 121, 247
BstMBI	GATC	4 cut(s)	28, 109, 118, 244
BstMWI	GCNNNNNNNGC	4 cut(s)	160, 190, 199, 335
BstUI	CGCG	4 cut(s)	79, 182, 184, 204
BstV1I	GCAGC	1 cut(s)	147
BstX2I	RGATCY	2 cut(s)	28, 244
BstYI	RGATCY	2 cut(s)	28, 244
BtgI	CCRYGG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	5 cut(s)	52, 56, 184, 204, 294
CfoI	GCGC	6 cut(s)	81, 184, 186, 204, 206, 357
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	115, 232
CviAII	CATG	3 cut(s)	61, 208, 220
CviJI	RGCY	7 cut(s)	97, 149, 160, 254, 296, 329, 338
CviKI_1	RGCY	7 cut(s)	97, 149, 160, 254, 296, 329, 338
CviQI	GTAC	2 cut(s)	115, 232
DpnI	GATC	4 cut(s)	30, 111, 120, 246
DpnII	GATC	4 cut(s)	28, 109, 118, 244
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	32, 207
Eco24I	GRGCYC	1 cut(s)	340
Eco32I	GATATC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	338
EcoRV	GATATC	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	32, 207
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	2 cut(s)	32, 207
FaeI	CATG	3 cut(s)	64, 211, 223
FaiI	YATR	6 cut(s)	26, 62, 209, 221, 257, 367
FatI	CATG	3 cut(s)	60, 207, 219
FauI	CCCGC	1 cut(s)	59
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	161
GlaI	GCGC	6 cut(s)	80, 183, 185, 203, 205, 356
GluI	GCNGC	1 cut(s)	161
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	6 cut(s)	81, 184, 186, 204, 206, 357
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	64, 211, 223
Hin6I	GCGC	6 cut(s)	79, 182, 184, 202, 204, 355
HinP1I	GCGC	6 cut(s)	79, 182, 184, 202, 204, 355
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	3 cut(s)	10, 110, 182
HpyAV	CCTTC	2 cut(s)	58, 290
HpyCH4V	TGCA	3 cut(s)	16, 154, 259
HpyF10VI	GCNNNNNNNGC	4 cut(s)	160, 190, 199, 335
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	64, 211, 223
HspAI	GCGC	6 cut(s)	79, 182, 184, 202, 204, 355
Kzo9I	GATC	4 cut(s)	28, 109, 118, 244
LmnI	GCTCC	1 cut(s)	335
LpnPI	CCDG	8 cut(s)	28, 68, 178, 203, 236, 248, 278, 284
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	4 cut(s)	30, 111, 120, 246
MboI	GATC	4 cut(s)	28, 109, 118, 244
MboII	GAAGA	4 cut(s)	49, 239, 254, 316
MflI	RGATCY	2 cut(s)	28, 244
MhlI	GDGCHC	1 cut(s)	340
MnlI	CCTC	5 cut(s)	92, 139, 224, 300, 319
MroXI	GAANNNNTTC	2 cut(s)	44, 246
MvnI	CGCG	4 cut(s)	79, 182, 184, 204
MwoI	GCNNNNNNNGC	4 cut(s)	160, 190, 199, 335
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	4 cut(s)	28, 109, 118, 244
NlaIII	CATG	3 cut(s)	64, 211, 223
PauI	GCGCGC	2 cut(s)	182, 202
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdmI	GAANNNNTTC	2 cut(s)	44, 246
PkrI	GCNGC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	211
PsuI	RGATCY	2 cut(s)	28, 244
PteI	GCGCGC	2 cut(s)	182, 202
RsaI	GTAC	2 cut(s)	116, 233
RsaNI	GTAC	2 cut(s)	115, 232
SacI	GAGCTC	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	176
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	4 cut(s)	28, 109, 118, 244
Sau96I	GGNCC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	4 cut(s)	216, 237, 282, 340
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	211
SsiI	CCGC	1 cut(s)	52
SstI	GAGCTC	1 cut(s)	340
StyI	CCWWGG	2 cut(s)	32, 207
TaqI	TCGA	2 cut(s)	100, 177
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	3 cut(s)	13, 77, 236
TspGWI	ACGGA	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	2 cut(s)	44, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.