Prupe.1G472700_v2.0.a1

Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
39298438 .. 39300032
1595 bp
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UTR
Exon/CDS
Intron
Prupe.1G472700.1

Sequence Viewer

Length: 369 bp
ATGGCGTCGTTTCTGCAATCGTTGGTAGATCCAAGGAAGAATTGGTTCGCCCGTCAGCACATGAAGGCCGTCTCTCAACGCCTCCGCCATTACGGGCTTCGATACGACGATCTGTACGATCCCTACTACGATTTGGACATCAAGGAGGCTTTGAATCGGCTACCAAGGGAGATAGTGGATGCTCGTAACCAGCGTCTCAAGCGCGCCATGGACCTCTCCATGAAGCACGAGTACCTTCCCGAACATCTTCAGGCACAGCAAACACCATTCAGGAGCTACCTTCAGGAAATGCTGGCTCTTGTGAAGAGGGAGAAAGCAGAGCGTGAAGCTTTGGGAGCATTGCCACTCTATCAGCGCACCATTCCATAA

Protein Analysis

123

Amino Acids

14.67

Weight (kDa)

9.55

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014016)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32470 AT5G25450
fragaria_vesca FvH4_2g29690
malus_domestica MD08G1143000.v1.1 MD15G1119900.v1.1
prunus_persica Prupe.1G472700_v2.0.a1
pyrus_communis pycom08g12170 pycom15g10800
rosa_chinensis RchiOBHm_Chr6g0298671
rosa_laevigata RLG00000011493
rosa_multiflora Rmu_sc0008099.1_g000004 Rmu_sc0008142.1_g000004
rosa_roxburghii Rroxscaffold_7G00169410
rosa_rugosa Rorug06G0282500
rosa_samantha Rh6BG401500 Rh6CG407400
rosa_wichuraiana Rw6G034420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 204
AciI CCGC 1 cut(s) 85
AclWI GGATC 2 cut(s) 23, 113
AcuI CTGAAG 2 cut(s) 233, 266
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 116, 233
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 2 cut(s) 276, 329
AluI AGCT 2 cut(s) 276, 329
Alw26I GTCTC 2 cut(s) 76, 200
AlwI GGATC 2 cut(s) 23, 113
AoxI GGCC 1 cut(s) 66
Asp700I GAANNNNTTC 2 cut(s) 44, 246
AspLEI GCGC 3 cut(s) 204, 206, 357
AspS9I GGNCC 1 cut(s) 211
AvaII GGWCC 1 cut(s) 211
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BauI CACGAG 1 cut(s) 227
BceAI ACGGC 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 76, 200
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 211
BmsI GCATC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 32, 164, 207
Bse3DI GCAATG 1 cut(s) 338
BseDI CCNNGG 3 cut(s) 32, 164, 207
BseGI GGATG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 338
BsePI GCGCGC 1 cut(s) 202
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 76, 200
BsmBI CGTCTC 2 cut(s) 76, 200
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 3 cut(s) 28, 109, 118
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 1 cut(s) 85
BspANI GGCC 1 cut(s) 68
BspFNI CGCG 1 cut(s) 204
BspPI GGATC 2 cut(s) 23, 113
BsrDI GCAATG 1 cut(s) 338
BssECI CCNNGG 3 cut(s) 32, 164, 207
BssHII GCGCGC 1 cut(s) 202
BssMI GATC 3 cut(s) 28, 109, 118
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 3 cut(s) 32, 164, 207
Bst2BI CACGAG 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 299
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 204, 294
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 204
BstHHI GCGC 3 cut(s) 204, 206, 357
BstKTI GATC 3 cut(s) 31, 112, 121
BstMAI GTCTC 2 cut(s) 76, 200
BstMBI GATC 3 cut(s) 28, 109, 118
BstMWI GCNNNNNNNGC 2 cut(s) 199, 335
BstUI CGCG 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 2 cut(s) 204, 294
CfoI GCGC 3 cut(s) 204, 206, 357
Cfr13I GGNCC 1 cut(s) 211
CseI GACGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 115, 232
CviAII CATG 3 cut(s) 61, 208, 220
CviJI RGCY 7 cut(s) 68, 97, 149, 160, 276, 296, 329
CviKI_1 RGCY 7 cut(s) 68, 97, 149, 160, 276, 296, 329
CviQI GTAC 2 cut(s) 115, 232
DpnI GATC 3 cut(s) 30, 111, 120
DpnII GATC 3 cut(s) 28, 109, 118
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
EciI GGCGGA 1 cut(s) 74
Eco130I CCWWGG 3 cut(s) 32, 164, 207
Eco47I GGWCC 1 cut(s) 211
Eco57I CTGAAG 2 cut(s) 233, 266
EcoT14I CCWWGG 3 cut(s) 32, 164, 207
ErhI CCWWGG 3 cut(s) 32, 164, 207
Esp3I CGTCTC 2 cut(s) 76, 200
FaeI CATG 3 cut(s) 64, 211, 223
FaiI YATR 4 cut(s) 62, 209, 221, 367
FatI CATG 3 cut(s) 60, 207, 219
FokI GGATG 1 cut(s) 191
GlaI GCGC 3 cut(s) 203, 205, 356
HaeIII GGCC 1 cut(s) 68
HgaI GACGC 1 cut(s) 182
HhaI GCGC 3 cut(s) 204, 206, 357
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 64, 211, 223
Hin6I GCGC 3 cut(s) 202, 204, 355
HinP1I GCGC 3 cut(s) 202, 204, 355
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 1 cut(s) 154
Hpy188III TCNNGA 3 cut(s) 239, 271, 284
Hpy99I CGWCG 2 cut(s) 10, 110
HpyAV CCTTC 3 cut(s) 58, 245, 290
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 335
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 64, 211, 223
HspAI GCGC 3 cut(s) 202, 204, 355
Kzo9I GATC 3 cut(s) 28, 109, 118
LmnI GCTCC 2 cut(s) 273, 335
LpnPI CCDG 5 cut(s) 203, 236, 256, 269, 278
LweI GCATC 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 185
MalI GATC 3 cut(s) 30, 111, 120
MboI GATC 3 cut(s) 28, 109, 118
MboII GAAGA 3 cut(s) 49, 239, 316
MflI RGATCY 1 cut(s) 28
MluCI AATT 1 cut(s) 40
MnlI CCTC 4 cut(s) 92, 139, 224, 300
MroXI GAANNNNTTC 2 cut(s) 44, 246
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 199, 335
NcoI CCATGG 1 cut(s) 207
NdeII GATC 3 cut(s) 28, 109, 118
NlaIII CATG 3 cut(s) 64, 211, 223
PauI GCGCGC 1 cut(s) 202
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 190
PdmI GAANNNNTTC 2 cut(s) 44, 246
PfeI GAWTC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 211
PsuI RGATCY 1 cut(s) 28
PteI GCGCGC 1 cut(s) 202
RsaI GTAC 2 cut(s) 116, 233
RsaNI GTAC 2 cut(s) 115, 232
Sau3AI GATC 3 cut(s) 28, 109, 118
Sau96I GGNCC 1 cut(s) 211
SetI ASST 5 cut(s) 216, 237, 278, 282, 331
SfaNI GCATC 1 cut(s) 169
SinI GGWCC 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 40
SsiI CCGC 1 cut(s) 85
StyI CCWWGG 3 cut(s) 32, 164, 207
TaqI TCGA 1 cut(s) 100
TasI AATT 1 cut(s) 40
TfiI GAWTC 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 77, 236
VpaK11BI GGWCC 1 cut(s) 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 39
XmnI GAANNNNTTC 2 cut(s) 44, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.