Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0014016

Physical Location & Seq

Genomic Coordinates Forward (+)

14192926 .. 14194894

Gene Structure 1969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1143000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGTCGTTGCTGAAATCTTTGGTGGATCCAAAGAAGAACTGGTTCGCCCGCCAGCACATGAAGGCCGTCTCCCAACGCCTCCGCCATTACGGGCTTCGATACGACGATCTGTACGATCCCTACTACGATTTGGACATAAAGGAGGCTCTGAGTCGTCTGCCGAGGGAGATTGTGGACGCTCGTAACCAGCGCCTGAAGCGCGCCATGGACCTCTCCATGAAGCACGAATACCTCCCCGAGCATCTTCAGGCACAGCAAACACCATTCAGGAGCTACCTTCAGGAAATGCTGGCTCTGGTGAAGAGGGAGAGAGAAGAGCGTGAGGCTTTGGGAGCTTTGCCACTCTATCAGCGCACCATTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0005773 GO:0005774 GO:0006091 GO:0006119 GO:0006122 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016043 GO:0016310 GO:0017004 GO:0017062 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022607 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033108 GO:0034551 GO:0034622 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0070069 GO:0070469 GO:0071704 GO:0071840 GO:0072521 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_14kD

Protein Analysis

123

Amino Acids

14.67

Weight (kDa)

9.52

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_14kD	PF02271	6 - 109	3.8e-25	Ubiquinol-cytochrome C reductase complex 14kD subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32470 AT5G25450
fragaria_vesca	FvH4_2g29690
malus_domestica	MD08G1143000.v1.1 MD15G1119900.v1.1
prunus_persica	Prupe.1G472700_v2.0.a1
pyrus_communis	pycom08g12170 pycom15g10800
rosa_chinensis	RchiOBHm_Chr6g0298671
rosa_laevigata	RLG00000011493
rosa_multiflora	Rmu_sc0008099.1_g000004 Rmu_sc0008142.1_g000004
rosa_roxburghii	Rroxscaffold_7G00169410
rosa_rugosa	Rorug06G0282500
rosa_samantha	Rh6BG401500 Rh6CG407400
rosa_wichuraiana	Rw6G034420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AciI	CCGC	2 cut(s)	52, 85
AclWI	GGATC	3 cut(s)	23, 36, 113
AcuI	CTGAAG	3 cut(s)	218, 233, 266
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	116
AluBI	AGCT	2 cut(s)	276, 338
AluI	AGCT	2 cut(s)	276, 338
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	3 cut(s)	23, 36, 113
AlwNI	CAGNNNCTG	1 cut(s)	196
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	4 cut(s)	195, 204, 206, 357
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BceAI	ACGGC	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	76
BfoI	RGCGCY	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	30
BmsI	GCATC	1 cut(s)	253
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	164, 207
Bse1I	ACTGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	164, 207
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	47
BsePI	GCGCGC	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	76
BsmBI	CGTCTC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	239
Bsp143I	GATC	3 cut(s)	28, 109, 118
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	2 cut(s)	52, 85
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	3 cut(s)	23, 36, 113
BspQI	GCTCTTC	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	164, 207
BssHII	GCGCGC	1 cut(s)	202
BssMI	GATC	3 cut(s)	28, 109, 118
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	207
Bst6I	CTCTTC	2 cut(s)	299, 312
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	4 cut(s)	52, 56, 204, 294
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	4 cut(s)	195, 204, 206, 357
BstKTI	GATC	3 cut(s)	31, 112, 121
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	3 cut(s)	28, 109, 118
BstMWI	GCNNNNNNNGC	3 cut(s)	199, 201, 335
BstUI	CGCG	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	207
Cac8I	GCNNGC	4 cut(s)	52, 56, 204, 294
CaiI	CAGNNNCTG	1 cut(s)	196
CfoI	GCGC	4 cut(s)	195, 204, 206, 357
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	3 cut(s)	61, 208, 220
CviJI	RGCY	7 cut(s)	68, 97, 149, 276, 296, 329, 338
CviKI_1	RGCY	7 cut(s)	68, 97, 149, 276, 296, 329, 338
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	3 cut(s)	30, 111, 120
DpnII	GATC	3 cut(s)	28, 109, 118
Eam1104I	CTCTTC	2 cut(s)	299, 312
EarI	CTCTTC	2 cut(s)	299, 312
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	3 cut(s)	218, 233, 266
Eco88I	CYCGRG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	3 cut(s)	64, 211, 223
FaiI	YATR	5 cut(s)	62, 140, 209, 221, 367
FatI	CATG	3 cut(s)	60, 207, 219
FauI	CCCGC	1 cut(s)	59
GlaI	GCGC	4 cut(s)	194, 203, 205, 356
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	68
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	4 cut(s)	195, 204, 206, 357
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	64, 211, 223
Hin6I	GCGC	4 cut(s)	193, 202, 204, 355
HinP1I	GCGC	4 cut(s)	193, 202, 204, 355
HinfI	GANTC	1 cut(s)	154
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	2 cut(s)	271, 284
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	2 cut(s)	10, 110
HpyAV	CCTTC	2 cut(s)	58, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	199, 201, 335
HpyF3I	CTNAG	1 cut(s)	152
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	64, 211, 223
HspAI	GCGC	4 cut(s)	193, 202, 204, 355
Kzo9I	GATC	3 cut(s)	28, 109, 118
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	2 cut(s)	273, 335
LpnPI	CCDG	9 cut(s)	28, 68, 203, 209, 236, 256, 269, 278, 284
LweI	GCATC	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	3 cut(s)	30, 111, 120
MboI	GATC	3 cut(s)	28, 109, 118
MboII	GAAGA	4 cut(s)	49, 239, 316, 329
MflI	RGATCY	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	7 cut(s)	92, 139, 159, 224, 245, 300, 319
MroXI	GAANNNNTTC	1 cut(s)	44
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	199, 201, 335
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	3 cut(s)	28, 109, 118
NlaIII	CATG	3 cut(s)	64, 211, 223
NlaIV	GGNNCC	1 cut(s)	30
NmeAIII	GCCGAG	1 cut(s)	189
PauI	GCGCGC	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	44
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	28
PteI	GCGCGC	1 cut(s)	202
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	312
Sau3AI	GATC	3 cut(s)	28, 109, 118
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	163
SetI	ASST	5 cut(s)	216, 237, 278, 282, 340
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	1 cut(s)	211
SsiI	CCGC	2 cut(s)	52, 85
StyI	CCWWGG	1 cut(s)	207
TaqI	TCGA	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	77, 236
VpaK11BI	GGWCC	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.