AT5G26330

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015252
Physical Location & Seq
Reverse (-)
9241420 .. 9242854
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26330.1

Sequence Viewer

Length: 564 bp
ATGGCAGCCATTATAGTGGCGGCTTTAGCGTGTATCGTGGTGATGCTACGACTGAGTGAAGCGGCCGTGTACAAAGTCGGCGACTCAGCAGGATGGACAACCATAGCCAACGTAGACTACAAGCTATGGGCTTCTACCAAAACTTTCCACATTGGTGATACTGTCTTGTTCGAATACAACCCACAATTCCACAACGTAATGAGAGTGACGCACCCAATGTATAGAAGTTGCAACACCTCAAAGCCAATCTCTACTTTCACCACCGGCAACGACTCAATCACACTCACCAACCACGGCCACCATTTCTTCTTTTGCGGCGTTCCTGGCCATTGCCTCGCCGGTCAGAAGCTCGACCTTCACGTCCTTCTCCCTGCCTCCTCCACGCCACTCTCTGATCCACCAACTTCCTCCTCCTCTTCTCCTCCCTCGACTACTATTCCTGCAGCCGGAGTCCCTGGCCCTTCTCCTAGCCTTGCTGCTTCTCTCCCGAGTATGGTGACGGCTCAAATCGTGGCCGTGGTGACTCTCCTAGTCTCTTTGGCCTTTACAAATTTTGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

187

Amino Acids

19.69

Weight (kDa)

7.08

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 32 - 115 1.5e-33 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26330
fragaria_vesca FvH4_4g15140
malus_domestica MD13G1189000.v1.1 MD16G1189800.v1.1
prunus_persica Prupe.1G156200_v2.0.a1
pyrus_communis pycom13g16340
rosa_chinensis RchiOBHm_Chr4g0416731
rosa_laevigata RLG00000007957
rosa_multiflora Rmu_sc0005655.1_g000002
rosa_roxburghii Rroxscaffold_5G00360600
rosa_rugosa Rorug04G0144200
rosa_samantha Rh4AG206900 Rh4BG204100 Rh4CG217900 Rh4DG204000
rosa_wichuraiana Rw4G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 359
AccI GTMKAC 1 cut(s) 114
AciI CCGC 3 cut(s) 20, 62, 315
AclWI GGATC 1 cut(s) 389
AcoI YGGCCR 4 cut(s) 63, 295, 325, 513
AcsI RAATTY 1 cut(s) 550
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 2 cut(s) 446, 493
AjiI CACGTC 1 cut(s) 361
AjnI CCWGG 2 cut(s) 322, 454
AleI CACNNNNGTG 1 cut(s) 153
AluBI AGCT 2 cut(s) 124, 349
AluI AGCT 2 cut(s) 124, 349
Alw26I GTCTC 1 cut(s) 538
AlwI GGATC 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 487
AoxI GGCC 6 cut(s) 63, 295, 325, 457, 513, 540
ApeKI GCWGC 3 cut(s) 5, 443, 476
ApoI RAATTY 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 458
AsuHPI GGTGA 6 cut(s) 52, 167, 250, 277, 508, 532
AsuII TTCGAA 1 cut(s) 171
AvaI CYCGRG 1 cut(s) 487
BalI TGGCCA 1 cut(s) 327
BbvI GCAGC 3 cut(s) 17, 455, 463
BccI CCATC 1 cut(s) 87
BceAI ACGGC 4 cut(s) 50, 310, 500, 516
BciT130I CCWGG 2 cut(s) 324, 456
BcoDI GTCTC 1 cut(s) 538
BfaI CTAG 2 cut(s) 468, 530
BfmI CTRYAG 1 cut(s) 441
BisI GCNGC 6 cut(s) 6, 21, 63, 316, 444, 477
BlsI GCNGC 6 cut(s) 7, 22, 64, 317, 445, 478
Bme1390I CCNGG 2 cut(s) 324, 456
BmeT110I CYCGRG 1 cut(s) 487
BmgBI CACGTC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 458
BmrFI CCNGG 2 cut(s) 324, 456
BmsI GCATC 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 292, 454, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 446, 493
Bse118I RCCGGY 2 cut(s) 263, 338
Bse3DI GCAATG 1 cut(s) 328
BseBI CCWGG 2 cut(s) 324, 456
BseDI CCNNGG 3 cut(s) 292, 454, 516
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 2 cut(s) 446, 493
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 2 cut(s) 44, 99
BseRI GAGGAG 4 cut(s) 367, 400, 403, 411
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 3 cut(s) 17, 455, 463
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 6 cut(s) 65, 297, 327, 459, 515, 542
BsiEI CGRYCG 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 3 cut(s) 264, 339, 447
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 2 cut(s) 446, 493
BsmAI GTCTC 1 cut(s) 538
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 6 cut(s) 65, 297, 327, 459, 515, 542
BsoBI CYCGRG 1 cut(s) 487
Bsp119I TTCGAA 1 cut(s) 171
Bsp1407I TGTACA 1 cut(s) 69
Bsp143I GATC 1 cut(s) 394
BspACI CCGC 3 cut(s) 20, 62, 315
BspANI GGCC 6 cut(s) 65, 297, 327, 459, 515, 542
BspCNI CTCAG 2 cut(s) 45, 98
BspMAI CTGCAG 1 cut(s) 445
BspPI GGATC 1 cut(s) 389
BspT104I TTCGAA 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 328
BsrFI RCCGGY 2 cut(s) 263, 338
BsrGI TGTACA 1 cut(s) 69
BssAI RCCGGY 2 cut(s) 263, 338
BssECI CCNNGG 3 cut(s) 292, 454, 516
BssMI GATC 1 cut(s) 394
Bst2UI CCWGG 2 cut(s) 324, 456
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 421
BstAUI TGTACA 1 cut(s) 69
BstBI TTCGAA 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 53, 85
BstDSI CCRYGG 2 cut(s) 292, 516
BstF5I GGATG 1 cut(s) 98
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 1 cut(s) 394
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 26, 324
BstNI CCWGG 2 cut(s) 324, 456
BstSCI CCNGG 2 cut(s) 322, 454
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 3 cut(s) 17, 455, 463
BstXI CCANNNNNNTGG 1 cut(s) 16
BstZI CGGCCG 1 cut(s) 63
BsuRI GGCC 6 cut(s) 65, 297, 327, 459, 515, 542
BtgI CCRYGG 2 cut(s) 292, 516
BtrI CACGTC 1 cut(s) 361
BtsCI GGATG 1 cut(s) 98
Cfr10I RCCGGY 2 cut(s) 263, 338
Cfr13I GGNCC 1 cut(s) 458
CseI GACGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 70
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 53, 85
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
DrdI GACNNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 359
EaeI YGGCCR 4 cut(s) 63, 295, 325, 513
EagI CGGCCG 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 421
EclXI CGGCCG 1 cut(s) 63
Eco52I CGGCCG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 487
EcoRII CCWGG 2 cut(s) 322, 454
FaiI YATR 5 cut(s) 14, 104, 127, 222, 494
FaqI GGGAC 1 cut(s) 437
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 6 cut(s) 6, 21, 63, 316, 444, 477
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 6 cut(s) 6, 21, 63, 316, 444, 477
FspBI CTAG 2 cut(s) 468, 530
GluI GCNGC 6 cut(s) 6, 21, 63, 316, 444, 477
HaeIII GGCC 6 cut(s) 65, 297, 327, 459, 515, 542
HapII CCGG 3 cut(s) 264, 339, 447
HgaI GACGC 1 cut(s) 217
HinfI GANTC 4 cut(s) 83, 272, 450, 523
HpaII CCGG 3 cut(s) 264, 339, 447
HphI GGTGA 6 cut(s) 52, 167, 250, 277, 508, 532
Hpy166II GTNNAC 2 cut(s) 70, 115
Hpy188I TCNGA 2 cut(s) 345, 394
Hpy188III TCNNGA 1 cut(s) 487
Hpy8I GTNNAC 2 cut(s) 70, 115
HpyAV CCTTC 3 cut(s) 365, 374, 471
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 3 cut(s) 111, 195, 360
HpyCH4V TGCA 2 cut(s) 231, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 324
HpyF3I CTNAG 2 cut(s) 53, 85
HpySE526I ACGT 3 cut(s) 111, 195, 360
Kzo9I GATC 1 cut(s) 394
Lsp1109I GCAGC 3 cut(s) 17, 455, 463
LweI GCATC 1 cut(s) 33
MaeI CTAG 2 cut(s) 468, 530
MaeII ACGT 3 cut(s) 111, 195, 360
MaeIII GTNAC 3 cut(s) 205, 496, 520
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 2 cut(s) 298, 408
MlsI TGGCCA 1 cut(s) 327
MluCI AATT 2 cut(s) 185, 550
MluNI TGGCCA 1 cut(s) 327
MlyI GAGTC 4 cut(s) 77, 266, 459, 517
MnlI CCTC 9 cut(s) 247, 344, 385, 388, 418, 421, 424, 432, 436
Mox20I TGGCCA 1 cut(s) 327
MscI TGGCCA 1 cut(s) 327
MseI TTAA 1 cut(s) 562
MslI CAYNNNNRTG 2 cut(s) 14, 153
Msp20I TGGCCA 1 cut(s) 327
MspI CCGG 3 cut(s) 264, 339, 447
MspR9I CCNGG 2 cut(s) 324, 456
MvaI CCWGG 2 cut(s) 324, 456
MwoI GCNNNNNNNGC 2 cut(s) 26, 324
NdeII GATC 1 cut(s) 394
NmuCI GTSAC 3 cut(s) 205, 496, 520
NspV TTCGAA 1 cut(s) 171
OliI CACNNNNGTG 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PkrI GCNGC 6 cut(s) 7, 22, 64, 317, 445, 478
PleI GAGTC 4 cut(s) 77, 266, 458, 517
PpsI GAGTC 4 cut(s) 77, 266, 458, 517
Psp6I CCWGG 2 cut(s) 322, 454
PspGI CCWGG 2 cut(s) 322, 454
PspPI GGNCC 1 cut(s) 458
PstI CTGCAG 1 cut(s) 445
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 2 cut(s) 14, 153
SaqAI TTAA 1 cut(s) 562
SatI GCNGC 6 cut(s) 6, 21, 63, 316, 444, 477
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 1 cut(s) 458
SchI GAGTC 4 cut(s) 77, 266, 459, 517
ScrFI CCNGG 2 cut(s) 324, 456
SetI ASST 7 cut(s) 114, 126, 198, 239, 351, 357, 363
SfaNI GCATC 1 cut(s) 33
SfcI CTRYAG 1 cut(s) 441
SfuI TTCGAA 1 cut(s) 171
SmiMI CAYNNNNRTG 2 cut(s) 14, 153
Sse9I AATT 2 cut(s) 185, 550
SsiI CCGC 3 cut(s) 20, 62, 315
SspMI CTAG 2 cut(s) 468, 530
StyD4I CCNGG 2 cut(s) 322, 454
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 3 cut(s) 114, 198, 363
TaqI TCGA 3 cut(s) 171, 351, 428
TasI AATT 2 cut(s) 185, 550
TatI WGTACW 1 cut(s) 69
TauI GCSGC 3 cut(s) 23, 65, 318
Tru1I TTAA 1 cut(s) 562
Tru9I TTAA 1 cut(s) 562
TseFI GTSAC 3 cut(s) 205, 496, 520
TseI GCWGC 3 cut(s) 5, 443, 476
Tsp45I GTSAC 3 cut(s) 205, 496, 520
XapI RAATTY 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 2 cut(s) 468, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.