MD13G1189000.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015252
Physical Location & Seq
Reverse (-)
16135095 .. 16136785
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1189000.v1.1.491

Sequence Viewer

Length: 537 bp
ATGGCTTTGGTGGTCAGAGTCTTGGCTCTAGCGGCGGCGGTGACGGCTGTTTTGGAGATGTCCAGTGCAGCTGTGTACAAGGTCGGAGACTCCGCCGGGTGGACCACCTTCGGAAATGTCAACTACAAACAATGGGCTGCTTCTAAAACTTTCCAACTTGGTGATGTTATCAGATTCGAATACAACCCCCAACTCCACAACGTGATCCGCGTTACGCACGCCATGTATCGGTCATGCAACGCCTCACTCCCCCTCGACTCCTACACCACCGGAAATGACACAATCACCATCACCACCAGAGGCCATTACTTCTACATGTGCGGGGTCCCCGGTCACTGCCAGGCCGGCCAGAAGGTCGACATCAACGCCATGCGCCATCCTTCGTCGGCAGCTCCAACTCCTTCGGCATTGGCCCCCCCAACAGTTCCTGCTCCTCACGCACCGACGCCAGGTCCAAGCATCGCTGCTCCATTACAATCTCTGAAGGGAAATTTTGGGCTGCTGGGATTAACACTTGTTGTTTCTGGTCTCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

179

Amino Acids

18.74

Weight (kDa)

9.1

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 117 3.4e-29 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26330
fragaria_vesca FvH4_4g15140
malus_domestica MD13G1189000.v1.1 MD16G1189800.v1.1
prunus_persica Prupe.1G156200_v2.0.a1
pyrus_communis pycom13g16340
rosa_chinensis RchiOBHm_Chr4g0416731
rosa_laevigata RLG00000007957
rosa_multiflora Rmu_sc0005655.1_g000002
rosa_roxburghii Rroxscaffold_5G00360600
rosa_rugosa Rorug04G0144200
rosa_samantha Rh4AG206900 Rh4BG204100 Rh4CG217900 Rh4DG204000
rosa_wichuraiana Rw4G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 357
AccII CGCG 1 cut(s) 210
AciI CCGC 6 cut(s) 32, 35, 38, 93, 208, 321
AclWI GGATC 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 346
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 503
AcyI GRCGYC 1 cut(s) 446
AdeI CACNNNGTG 1 cut(s) 202
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 3 cut(s) 99, 228, 449
AflIII ACRYGT 1 cut(s) 315
AhdI GACNNNNNGTC 1 cut(s) 450
AjnI CCWGG 2 cut(s) 339, 448
AluBI AGCT 2 cut(s) 71, 392
AluI AGCT 2 cut(s) 71, 392
Alw26I GTCTC 2 cut(s) 81, 533
AlwI GGATC 1 cut(s) 199
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 4 cut(s) 301, 342, 346, 411
ApeKI GCWGC 5 cut(s) 68, 137, 389, 464, 499
ApoI RAATTY 1 cut(s) 490
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 4 cut(s) 102, 325, 412, 452
AsuC2I CCSGG 2 cut(s) 97, 330
AsuHPI GGTGA 4 cut(s) 52, 173, 277, 283
AsuII TTCGAA 1 cut(s) 177
AvaII GGWCC 3 cut(s) 102, 325, 452
BbvI GCAGC 5 cut(s) 80, 124, 401, 451, 486
BccI CCATC 2 cut(s) 296, 384
BceAI ACGGC 1 cut(s) 60
BciT130I CCWGG 2 cut(s) 341, 450
BcnI CCSGG 2 cut(s) 97, 330
BcoDI GTCTC 2 cut(s) 81, 533
BfaI CTAG 1 cut(s) 29
BglI GCCNNNNNGGC 1 cut(s) 345
BisI GCNGC 7 cut(s) 33, 36, 69, 138, 390, 465, 500
BlsI GCNGC 7 cut(s) 34, 37, 70, 139, 391, 466, 501
Bme1390I CCNGG 4 cut(s) 97, 330, 341, 450
Bme18I GGWCC 3 cut(s) 102, 325, 452
BmeRI GACNNNNNGTC 1 cut(s) 450
BmgT120I GGNCC 4 cut(s) 102, 325, 412, 452
BmiI GGNNCC 3 cut(s) 326, 327, 414
BmrFI CCNGG 4 cut(s) 97, 330, 341, 450
BmsI GCATC 1 cut(s) 468
Bpu14I TTCGAA 1 cut(s) 177
BpuMI CCSGG 2 cut(s) 97, 330
BsaHI GRCGYC 1 cut(s) 446
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 328
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 228, 449
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 63
BseBI CCWGG 2 cut(s) 341, 450
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 3 cut(s) 99, 228, 449
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 423
BseXI GCAGC 5 cut(s) 80, 124, 401, 451, 486
BseYI CCCAGC 1 cut(s) 502
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 4 cut(s) 303, 344, 348, 413
BsiSI CCGG 4 cut(s) 96, 270, 330, 345
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 3 cut(s) 99, 228, 449
BsmAI GTCTC 2 cut(s) 81, 533
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 4 cut(s) 303, 344, 348, 413
Bso31I GGTCTC 1 cut(s) 533
Bsp119I TTCGAA 1 cut(s) 177
Bsp1407I TGTACA 1 cut(s) 75
Bsp143I GATC 1 cut(s) 204
BspACI CCGC 6 cut(s) 32, 35, 38, 93, 208, 321
BspANI GGCC 4 cut(s) 303, 344, 348, 413
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 3 cut(s) 326, 327, 414
BspPI GGATC 1 cut(s) 199
BspT104I TTCGAA 1 cut(s) 177
BspTNI GGTCTC 1 cut(s) 533
BsrFI RCCGGY 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 75
BsrI ACTGG 1 cut(s) 63
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 1 cut(s) 204
BssNI GRCGYC 1 cut(s) 446
Bst2UI CCWGG 2 cut(s) 341, 450
Bst4CI ACNGT 1 cut(s) 424
BstACI GRCGYC 1 cut(s) 446
BstAUI TGTACA 1 cut(s) 75
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 219, 346
BstDEI CTNAG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 376
BstFNI CGCG 1 cut(s) 210
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 2 cut(s) 81, 533
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 4 cut(s) 32, 44, 345, 437
BstNI CCWGG 2 cut(s) 341, 450
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 4 cut(s) 95, 328, 339, 448
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 5 cut(s) 80, 124, 401, 451, 486
BsuRI GGCC 4 cut(s) 303, 344, 348, 413
BtgZI GCGATG 1 cut(s) 445
BtsCI GGATG 1 cut(s) 376
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 70, 334
Cac8I GCNNGC 2 cut(s) 219, 346
CaiI CAGNNNCTG 1 cut(s) 428
CfoI GCGC 1 cut(s) 375
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 4 cut(s) 102, 325, 412, 452
CseI GACGC 1 cut(s) 454
Csp6I GTAC 1 cut(s) 76
CviAII CATG 4 cut(s) 223, 234, 316, 370
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 534
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
DraIII CACNNNGTG 1 cut(s) 202
DriI GACNNNNNGTC 1 cut(s) 450
EaeI YGGCCR 1 cut(s) 346
Eam1105I GACNNNNNGTC 1 cut(s) 450
EciI GGCGGA 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 533
Eco47I GGWCC 3 cut(s) 102, 325, 452
Eco57I CTGAAG 1 cut(s) 503
EcoO109I RGGNCCY 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 339, 448
FaeI CATG 4 cut(s) 226, 237, 319, 373
FaiI YATR 4 cut(s) 224, 235, 317, 371
FaqI GGGAC 1 cut(s) 311
FatI CATG 4 cut(s) 222, 233, 315, 369
FauI CCCGC 1 cut(s) 314
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 7 cut(s) 33, 36, 69, 138, 390, 465, 500
FokI GGATG 1 cut(s) 363
FseI GGCCGGCC 1 cut(s) 348
Fsp4HI GCNGC 7 cut(s) 33, 36, 69, 138, 390, 465, 500
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 374
GluI GCNGC 7 cut(s) 33, 36, 69, 138, 390, 465, 500
GsaI CCCAGC 1 cut(s) 506
HaeIII GGCC 4 cut(s) 303, 344, 348, 413
HapII CCGG 4 cut(s) 96, 270, 330, 345
HgaI GACGC 1 cut(s) 454
HhaI GCGC 1 cut(s) 375
Hin1I GRCGYC 1 cut(s) 446
Hin1II CATG 4 cut(s) 226, 237, 319, 373
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 2 cut(s) 121, 358
HindII GTYRAC 2 cut(s) 121, 358
HinfI GANTC 4 cut(s) 18, 89, 174, 257
HpaII CCGG 4 cut(s) 96, 270, 330, 345
HphI GGTGA 4 cut(s) 52, 173, 277, 283
Hpy166II GTNNAC 4 cut(s) 76, 102, 121, 358
Hpy188I TCNGA 5 cut(s) 17, 86, 113, 173, 483
Hpy8I GTNNAC 4 cut(s) 76, 102, 121, 358
Hpy99I CGWCG 2 cut(s) 388, 448
HpyAV CCTTC 5 cut(s) 118, 346, 390, 411, 478
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 68, 237
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 44, 345, 437
HpyF3I CTNAG 1 cut(s) 534
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 446
Hsp92II CATG 4 cut(s) 226, 237, 319, 373
HspAI GCGC 1 cut(s) 373
KflI GGGWCCC 1 cut(s) 325
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 3 cut(s) 397, 436, 472
Lsp1109I GCAGC 5 cut(s) 80, 124, 401, 451, 486
LweI GCATC 1 cut(s) 468
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 3 cut(s) 40, 211, 332
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MluCI AATT 1 cut(s) 490
MlyI GAGTC 3 cut(s) 27, 83, 251
MmeI TCCRAC 3 cut(s) 64, 178, 419
MnlI CCTC 4 cut(s) 253, 263, 293, 444
MroNI GCCGGC 1 cut(s) 344
MseI TTAA 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 4 cut(s) 96, 270, 330, 345
MspR9I CCNGG 4 cut(s) 97, 330, 341, 450
MvaI CCWGG 2 cut(s) 341, 450
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 4 cut(s) 32, 44, 345, 437
NaeI GCCGGC 1 cut(s) 346
NciI CCSGG 2 cut(s) 97, 330
NdeII GATC 1 cut(s) 204
NgoMIV GCCGGC 1 cut(s) 344
NlaIII CATG 4 cut(s) 226, 237, 319, 373
NlaIV GGNNCC 3 cut(s) 326, 327, 414
NmuCI GTSAC 2 cut(s) 40, 332
NspI RCATGY 1 cut(s) 319
NspV TTCGAA 1 cut(s) 177
PciI ACATGT 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PdiI GCCGGC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 174
PkrI GCNGC 7 cut(s) 34, 37, 70, 139, 391, 466, 501
PleI GAGTC 3 cut(s) 26, 83, 251
PpsI GAGTC 3 cut(s) 26, 83, 251
PpuMI RGGWCCY 1 cut(s) 325
PscI ACATGT 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 325
Psp6I CCWGG 2 cut(s) 339, 448
PspFI CCCAGC 1 cut(s) 502
PspGI CCWGG 2 cut(s) 339, 448
PspN4I GGNNCC 3 cut(s) 326, 327, 414
PspPI GGNCC 4 cut(s) 102, 325, 412, 452
PspPPI RGGWCCY 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 428
PvuII CAGCTG 1 cut(s) 71
RigI GGCCGGCC 1 cut(s) 348
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SalI GTCGAC 1 cut(s) 356
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 7 cut(s) 33, 36, 69, 138, 390, 465, 500
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 4 cut(s) 102, 325, 412, 452
SchI GAGTC 3 cut(s) 27, 83, 251
ScrFI CCNGG 4 cut(s) 97, 330, 341, 450
SetI ASST 7 cut(s) 73, 84, 110, 204, 357, 394, 454
SfaNI GCATC 1 cut(s) 468
SfuI TTCGAA 1 cut(s) 177
SinI GGWCC 3 cut(s) 102, 325, 452
Sse9I AATT 1 cut(s) 490
SsiI CCGC 6 cut(s) 32, 35, 38, 93, 208, 321
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 4 cut(s) 95, 328, 339, 448
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 1 cut(s) 204
TaqI TCGA 3 cut(s) 177, 255, 357
TaqII GACCGA 1 cut(s) 219
TasI AATT 1 cut(s) 490
TatI WGTACW 1 cut(s) 75
TauI GCSGC 2 cut(s) 35, 38
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 2 cut(s) 70, 341
TseFI GTSAC 2 cut(s) 40, 332
TseI GCWGC 5 cut(s) 68, 137, 389, 464, 499
Tsp45I GTSAC 2 cut(s) 40, 332
TspRI CASTG 2 cut(s) 70, 341
VpaK11BI GGWCC 3 cut(s) 102, 325, 452
XapI RAATTY 1 cut(s) 490
XceI RCATGY 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.