RLG00000007957

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015252
Physical Location & Seq
Reverse (-)
23440456 .. 23441901
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007957

Sequence Viewer

Length: 546 bp
ATGGCTTCCGTGATCAGAGTCTTGGCTCTGTTGGTGGCGACGATGGCTATGGTGCTGCAGGTTTCGAATGCGACTGTATACAAGGTTGGAGACTCGGCTGGATGGACCACCATGGGAAATGTCAACTACAAAGAATGGGCTGCTACCAAGACTTTCGGAGTTGGAGACGTTATCAAATTCGCATACAATGCTCAGTTTCACAATGTACTTCGAGTTACACATGCCATGTACAGGTCATGTAACGCTTCAGTCCCTTTGGAATCCTTTAGCACCGGAAACGACTCCATCACAATCAAGACCAAAGGCCACCACTTCTTTATTTGCGGTGTTCCCGGTCACTGCCAAGCTGGTCAGAAGGTCGACATCAATGTTCGCAATGTATCAACCGCTCCAACTCCTTCTGCATTACCCTCTCCTACTGCAATTACTGCTGCCAAGACCCCCGCACCGTCTTCAAATATGGCTGCTCCCTACAAATTTGTGAAGGGACAATCTGCGTTGCTAGGATTAACAATTGCAACTCTTGCATTTTTTGTTTCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

182

Amino Acids

19.13

Weight (kDa)

9.64

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 118 1.9e-30 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26330
fragaria_vesca FvH4_4g15140
malus_domestica MD13G1189000.v1.1 MD16G1189800.v1.1
prunus_persica Prupe.1G156200_v2.0.a1
pyrus_communis pycom13g16340
rosa_chinensis RchiOBHm_Chr4g0416731
rosa_laevigata RLG00000007957
rosa_multiflora Rmu_sc0005655.1_g000002
rosa_roxburghii Rroxscaffold_5G00360600
rosa_rugosa Rorug04G0144200
rosa_samantha Rh4AG206900 Rh4BG204100 Rh4CG217900 Rh4DG204000
rosa_wichuraiana Rw4G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
AccBSI CCGCTC 1 cut(s) 389
AccI GTMKAC 2 cut(s) 78, 360
AciI CCGC 3 cut(s) 324, 387, 444
AcsI RAATTY 2 cut(s) 176, 476
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 2 cut(s) 207, 230
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 1 cut(s) 456
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw26I GTCTC 2 cut(s) 84, 159
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 4 cut(s) 55, 140, 431, 464
ApoI RAATTY 2 cut(s) 176, 476
AspS9I GGNCC 1 cut(s) 105
AsuC2I CCSGG 1 cut(s) 333
AsuII TTCGAA 1 cut(s) 65
AvaII GGWCC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 444
BbvI GCAGC 4 cut(s) 42, 127, 418, 451
BccI CCATC 3 cut(s) 37, 96, 293
BclI TGATCA 1 cut(s) 12
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 2 cut(s) 84, 159
BfaI CTAG 2 cut(s) 503, 540
BfmI CTRYAG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 49
BisI GCNGC 4 cut(s) 56, 141, 432, 465
BlsI GCNGC 4 cut(s) 57, 142, 433, 466
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 206
BseXI GCAGC 4 cut(s) 42, 127, 418, 451
BshFI GGCC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 273, 333
BslFI GGGAC 2 cut(s) 236, 501
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 2 cut(s) 84, 159
BsmBI CGTCTC 1 cut(s) 159
BsmFI GGGAC 2 cut(s) 236, 501
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 65
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 1 cut(s) 12
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 3 cut(s) 324, 387, 444
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 49
BspT104I TTCGAA 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 382
BsrGI TGTACA 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 1 cut(s) 12
BssNAI GTATAC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 111
Bst1107I GTATAC 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 76, 450
BstAPI GCANNNNNTGC 3 cut(s) 188, 428, 524
BstAUI TGTACA 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 192
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 107
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 2 cut(s) 84, 159
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 4 cut(s) 44, 188, 428, 524
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 56
BstV1I GCAGC 4 cut(s) 42, 127, 418, 451
BstV2I GAAGAC 1 cut(s) 444
BstZ17I GTATAC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 306
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 337
BveI ACCTGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 105
Csp6I GTAC 2 cut(s) 206, 229
CviAII CATG 4 cut(s) 112, 221, 226, 237
CviJI RGCY 8 cut(s) 5, 26, 47, 98, 140, 306, 347, 464
CviKI_1 RGCY 8 cut(s) 5, 26, 47, 98, 140, 306, 347, 464
CviQI GTAC 2 cut(s) 206, 229
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 4 cut(s) 115, 224, 229, 240
FaiI YATR 8 cut(s) 50, 79, 113, 184, 222, 227, 238, 461
FaqI GGGAC 2 cut(s) 236, 501
FatI CATG 4 cut(s) 111, 220, 225, 236
FauI CCCGC 1 cut(s) 451
FbaI TGATCA 1 cut(s) 12
FblI GTMKAC 2 cut(s) 78, 360
Fnu4HI GCNGC 4 cut(s) 56, 141, 432, 465
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 4 cut(s) 56, 141, 432, 465
FspBI CTAG 2 cut(s) 503, 540
GluI GCNGC 4 cut(s) 56, 141, 432, 465
HaeIII GGCC 1 cut(s) 306
HapII CCGG 2 cut(s) 273, 333
Hin1II CATG 4 cut(s) 115, 224, 229, 240
HincII GTYRAC 2 cut(s) 124, 361
HindII GTYRAC 2 cut(s) 124, 361
HinfI GANTC 4 cut(s) 18, 92, 260, 281
HpaII CCGG 2 cut(s) 273, 333
Hpy166II GTNNAC 3 cut(s) 79, 124, 361
Hpy188I TCNGA 3 cut(s) 17, 158, 354
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 3 cut(s) 79, 124, 361
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 3 cut(s) 349, 408, 478
HpyCH4III ACNGT 2 cut(s) 76, 450
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 5 cut(s) 58, 404, 422, 518, 527
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 188, 428, 524
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 4 cut(s) 115, 224, 229, 240
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 394, 472
LpnPI CCDG 6 cut(s) 44, 84, 217, 286, 333, 346
Lsp1109I GCAGC 4 cut(s) 42, 127, 418, 451
MaeI CTAG 2 cut(s) 503, 540
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 3 cut(s) 214, 239, 335
MalI GATC 1 cut(s) 14
MbiI CCGCTC 1 cut(s) 389
MboI GATC 1 cut(s) 12
MboII GAAGA 1 cut(s) 444
MfeI CAATTG 1 cut(s) 513
MluCI AATT 4 cut(s) 176, 423, 476, 513
MlyI GAGTC 3 cut(s) 27, 86, 275
MmeI TCCRAC 3 cut(s) 67, 142, 416
MnlI CCTC 1 cut(s) 421
MseI TTAA 2 cut(s) 509, 544
MspI CCGG 2 cut(s) 273, 333
MspR9I CCNGG 1 cut(s) 333
MunI CAATTG 1 cut(s) 513
Mva1269I GAATGC 1 cut(s) 73
MwoI GCNNNNNNNGC 4 cut(s) 44, 188, 428, 524
NciI CCSGG 1 cut(s) 333
NcoI CCATGG 1 cut(s) 111
NdeII GATC 1 cut(s) 12
NlaIII CATG 4 cut(s) 115, 224, 229, 240
NmeAIII GCCGAG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 1 cut(s) 224
NspV TTCGAA 1 cut(s) 65
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 4 cut(s) 57, 142, 433, 466
PleI GAGTC 3 cut(s) 26, 86, 275
PpsI GAGTC 3 cut(s) 26, 86, 275
PspPI GGNCC 1 cut(s) 105
PstI CTGCAG 1 cut(s) 60
RsaI GTAC 2 cut(s) 207, 230
RsaNI GTAC 2 cut(s) 206, 229
SalI GTCGAC 1 cut(s) 359
SaqAI TTAA 2 cut(s) 509, 544
SatI GCNGC 4 cut(s) 56, 141, 432, 465
Sau3AI GATC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 105
SchI GAGTC 3 cut(s) 27, 86, 275
ScrFI CCNGG 1 cut(s) 333
SetI ASST 6 cut(s) 63, 87, 171, 236, 349, 360
SfcI CTRYAG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 1 cut(s) 105
Sse9I AATT 4 cut(s) 176, 423, 476, 513
SsiI CCGC 3 cut(s) 324, 387, 444
SspMI CTAG 2 cut(s) 503, 540
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 76, 450
TaiI ACGT 1 cut(s) 171
TaqI TCGA 3 cut(s) 65, 211, 360
TasI AATT 4 cut(s) 176, 423, 476, 513
TatI WGTACW 2 cut(s) 205, 228
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 2 cut(s) 509, 544
Tru9I TTAA 2 cut(s) 509, 544
TscAI CASTG 1 cut(s) 344
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 4 cut(s) 55, 140, 431, 464
Tsp45I GTSAC 1 cut(s) 335
TspRI CASTG 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 2 cut(s) 176, 476
XceI RCATGY 1 cut(s) 224
XmiI GTMKAC 2 cut(s) 78, 360
XspI CTAG 2 cut(s) 503, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.