MD16G1189800.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015252
Physical Location & Seq
Reverse (-)
16521348 .. 16523564
2217 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1189800.v1.1.491

Sequence Viewer

Length: 552 bp
ATGGCTTTGGTGGTTAGAGTCTTGGCTTTAGTGGTGGCGGTGATGGCTGTTTTGGAGATGTCCAGTGCAGCTGTGTACAAGGTCGGTGACTCTGCCGGGTGGACCACCATCGGCAATGTCGACTACAAACAATGGTCTGCCACTAAGAATTTCCAACTTGGTGATGTTATCAAATTCGAATACAACTCTCAATTCCACAACGTGATTCGCGTCACGCACGCCATGTACCAGTCATGCAACGCCTCAGTGCCCTTGGACTCCTACTCCACTGGAAACGACTCAATCACAATCACCACCAAAGGCCACCACTTCTACATGTGCGGGGTCCCCGGTCACTGCAAGGCCGGCCAGAAGGTCGACATAAACGTCATTCGCCATCCTTCGTCGGCTGCTCCAACCCCTTCCGCGTTGGCCTCTCCAATAGTTCCTGCTCCGCATGCACCAGTGCCAGGTCCAAGCTCGGCTGCTCCGTTACAATCTCTGGTGGGACATTTTGCTTTGCTGGGATTAACACTTGCAGCACTCGCACTTCTTGTTTCTGGTCTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

184

Amino Acids

19.15

Weight (kDa)

8.47

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 117 2.2e-29 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26330
fragaria_vesca FvH4_4g15140
malus_domestica MD13G1189000.v1.1 MD16G1189800.v1.1
prunus_persica Prupe.1G156200_v2.0.a1
pyrus_communis pycom13g16340
rosa_chinensis RchiOBHm_Chr4g0416731
rosa_laevigata RLG00000007957
rosa_multiflora Rmu_sc0005655.1_g000002
rosa_roxburghii Rroxscaffold_5G00360600
rosa_rugosa Rorug04G0144200
rosa_samantha Rh4AG206900 Rh4BG204100 Rh4CG217900 Rh4DG204000
rosa_wichuraiana Rw4G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 365
AccI GTMKAC 2 cut(s) 120, 357
AccII CGCG 2 cut(s) 210, 407
AciI CCGC 4 cut(s) 38, 321, 405, 434
AcoI YGGCCR 1 cut(s) 346
AcsI RAATTY 2 cut(s) 148, 173
AdeI CACNNNGTG 1 cut(s) 202
AfaI GTAC 2 cut(s) 77, 227
AfiI CCNNNNNNNGG 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 315
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 2 cut(s) 71, 459
AluI AGCT 2 cut(s) 71, 459
AoxI GGCC 4 cut(s) 301, 342, 346, 411
ApeKI GCWGC 4 cut(s) 68, 389, 464, 518
ApoI RAATTY 2 cut(s) 148, 173
AspS9I GGNCC 3 cut(s) 102, 325, 452
AsuC2I CCSGG 2 cut(s) 97, 330
AsuHPI GGTGA 4 cut(s) 52, 98, 173, 283
AsuII TTCGAA 1 cut(s) 177
AvaII GGWCC 3 cut(s) 102, 325, 452
BaeGI GKGCMC 1 cut(s) 252
BbvI GCAGC 4 cut(s) 80, 376, 451, 530
BccI CCATC 3 cut(s) 37, 116, 384
BciT130I CCWGG 1 cut(s) 450
BcnI CCSGG 2 cut(s) 97, 330
BisI GCNGC 4 cut(s) 69, 390, 465, 519
BlsI GCNGC 4 cut(s) 70, 391, 466, 520
Bme1390I CCNGG 3 cut(s) 97, 330, 450
Bme18I GGWCC 3 cut(s) 102, 325, 452
BmgT120I GGNCC 3 cut(s) 102, 325, 452
BmiI GGNNCC 2 cut(s) 326, 327
BmrFI CCNGG 3 cut(s) 97, 330, 450
Bpu14I TTCGAA 1 cut(s) 177
BpuMI CCSGG 2 cut(s) 97, 330
BsaJI CCNNGG 2 cut(s) 252, 328
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 4 cut(s) 63, 229, 274, 443
Bse3DI GCAATG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 2 cut(s) 252, 328
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 4 cut(s) 63, 229, 274, 443
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 4 cut(s) 80, 376, 451, 530
BseYI CCCAGC 1 cut(s) 502
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 2 cut(s) 210, 407
BshFI GGCC 4 cut(s) 303, 344, 348, 413
BsiSI CCGG 3 cut(s) 96, 330, 345
BslFI GGGAC 2 cut(s) 311, 501
BslI CCNNNNNNNGG 1 cut(s) 449
BsmFI GGGAC 2 cut(s) 311, 501
BsnI GGCC 4 cut(s) 303, 344, 348, 413
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 252
Bsp1407I TGTACA 1 cut(s) 75
BspACI CCGC 4 cut(s) 38, 321, 405, 434
BspANI GGCC 4 cut(s) 303, 344, 348, 413
BspCNI CTCAG 1 cut(s) 257
BspFNI CGCG 2 cut(s) 210, 407
BspLI GGNNCC 2 cut(s) 326, 327
BspT104I TTCGAA 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 75
BsrI ACTGG 4 cut(s) 63, 229, 274, 443
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 252, 328
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 450
BstAUI TGTACA 1 cut(s) 75
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 3 cut(s) 219, 346, 438
BstDEI CTNAG 3 cut(s) 144, 244, 549
BstF5I GGATG 1 cut(s) 376
BstFNI CGCG 2 cut(s) 210, 407
BstMWI GCNNNNNNNGC 4 cut(s) 44, 345, 437, 524
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 2 cut(s) 319, 440
BstSCI CCNGG 3 cut(s) 95, 328, 448
BstSLI GKGCMC 1 cut(s) 252
BstUI CGCG 2 cut(s) 210, 407
BstV1I GCAGC 4 cut(s) 80, 376, 451, 530
BsuRI GGCC 4 cut(s) 303, 344, 348, 413
BtsCI GGATG 1 cut(s) 376
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 5 cut(s) 70, 252, 267, 334, 450
Cac8I GCNNGC 3 cut(s) 219, 346, 438
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 3 cut(s) 102, 325, 452
CseI GACGC 1 cut(s) 199
Csp6I GTAC 2 cut(s) 76, 226
CviAII CATG 4 cut(s) 223, 234, 316, 437
CviQI GTAC 2 cut(s) 76, 226
DdeI CTNAG 3 cut(s) 144, 244, 549
DraIII CACNNNGTG 1 cut(s) 202
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 252
Eco47I GGWCC 3 cut(s) 102, 325, 452
EcoO109I RGGNCCY 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 4 cut(s) 226, 237, 319, 440
FaiI YATR 5 cut(s) 224, 235, 317, 362, 438
FaqI GGGAC 2 cut(s) 311, 501
FatI CATG 4 cut(s) 222, 233, 315, 436
FauI CCCGC 1 cut(s) 314
FblI GTMKAC 2 cut(s) 120, 357
Fnu4HI GCNGC 4 cut(s) 69, 390, 465, 519
FokI GGATG 1 cut(s) 363
FseI GGCCGGCC 1 cut(s) 348
Fsp4HI GCNGC 4 cut(s) 69, 390, 465, 519
GluI GCNGC 4 cut(s) 69, 390, 465, 519
GsaI CCCAGC 1 cut(s) 506
HaeIII GGCC 4 cut(s) 303, 344, 348, 413
HapII CCGG 3 cut(s) 96, 330, 345
HgaI GACGC 1 cut(s) 199
Hin1II CATG 4 cut(s) 226, 237, 319, 440
HincII GTYRAC 2 cut(s) 121, 358
HindII GTYRAC 2 cut(s) 121, 358
HinfI GANTC 5 cut(s) 18, 89, 205, 257, 278
HpaII CCGG 3 cut(s) 96, 330, 345
HphI GGTGA 4 cut(s) 52, 98, 173, 283
Hpy166II GTNNAC 4 cut(s) 76, 102, 121, 358
Hpy8I GTNNAC 4 cut(s) 76, 102, 121, 358
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 3 cut(s) 346, 390, 411
HpyCH4IV ACGT 2 cut(s) 201, 366
HpyCH4V TGCA 5 cut(s) 68, 237, 339, 440, 518
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 345, 437, 524
HpyF3I CTNAG 3 cut(s) 144, 244, 549
HpySE526I ACGT 2 cut(s) 201, 366
Hsp92II CATG 4 cut(s) 226, 237, 319, 440
KflI GGGWCCC 1 cut(s) 325
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
LmnI GCTCC 3 cut(s) 397, 436, 472
Lsp1109I GCAGC 4 cut(s) 80, 376, 451, 530
MaeII ACGT 2 cut(s) 201, 366
MaeIII GTNAC 4 cut(s) 86, 211, 332, 471
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 3 cut(s) 148, 173, 191
MlyI GAGTC 4 cut(s) 27, 83, 251, 272
MmeI TCCRAC 2 cut(s) 178, 419
MnlI CCTC 2 cut(s) 253, 424
MroNI GCCGGC 1 cut(s) 344
MseI TTAA 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 3 cut(s) 96, 330, 345
MspR9I CCNGG 3 cut(s) 97, 330, 450
MvaI CCWGG 1 cut(s) 450
MvnI CGCG 2 cut(s) 210, 407
MwoI GCNNNNNNNGC 4 cut(s) 44, 345, 437, 524
NaeI GCCGGC 1 cut(s) 346
NciI CCSGG 2 cut(s) 97, 330
NgoMIV GCCGGC 1 cut(s) 344
NlaIII CATG 4 cut(s) 226, 237, 319, 440
NlaIV GGNNCC 2 cut(s) 326, 327
NmeAIII GCCGAG 1 cut(s) 440
NmuCI GTSAC 3 cut(s) 86, 211, 332
NspI RCATGY 2 cut(s) 319, 440
NspV TTCGAA 1 cut(s) 177
PaeI GCATGC 1 cut(s) 440
PciI ACATGT 1 cut(s) 315
PcsI WCGNNNNNNNCGW 4 cut(s) 117, 207, 363, 467
PdiI GCCGGC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 4 cut(s) 70, 391, 466, 520
PleI GAGTC 4 cut(s) 26, 83, 251, 272
PpsI GAGTC 4 cut(s) 26, 83, 251, 272
PpuMI RGGWCCY 1 cut(s) 325
PscI ACATGT 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 448
PspFI CCCAGC 1 cut(s) 502
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 326, 327
PspPI GGNCC 3 cut(s) 102, 325, 452
PspPPI RGGWCCY 1 cut(s) 325
PvuII CAGCTG 1 cut(s) 71
RigI GGCCGGCC 1 cut(s) 348
RsaI GTAC 2 cut(s) 77, 227
RsaNI GTAC 2 cut(s) 76, 226
SalI GTCGAC 2 cut(s) 119, 356
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 4 cut(s) 69, 390, 465, 519
Sau96I GGNCC 3 cut(s) 102, 325, 452
SchI GAGTC 4 cut(s) 27, 83, 251, 272
ScrFI CCNGG 3 cut(s) 97, 330, 450
SduI GDGCHC 1 cut(s) 252
SetI ASST 7 cut(s) 73, 84, 204, 357, 369, 454, 461
SfuI TTCGAA 1 cut(s) 177
SinI GGWCC 3 cut(s) 102, 325, 452
SphI GCATGC 1 cut(s) 440
Sse9I AATT 3 cut(s) 148, 173, 191
SsiI CCGC 4 cut(s) 38, 321, 405, 434
StyD4I CCNGG 3 cut(s) 95, 328, 448
StyI CCWWGG 1 cut(s) 252
TaiI ACGT 2 cut(s) 204, 369
TaqI TCGA 3 cut(s) 120, 177, 357
TasI AATT 3 cut(s) 148, 173, 191
TatI WGTACW 1 cut(s) 75
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 5 cut(s) 70, 252, 274, 341, 450
TseFI GTSAC 3 cut(s) 86, 211, 332
TseI GCWGC 4 cut(s) 68, 389, 464, 518
Tsp45I GTSAC 3 cut(s) 86, 211, 332
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 5 cut(s) 70, 252, 274, 341, 450
VpaK11BI GGWCC 3 cut(s) 102, 325, 452
XapI RAATTY 2 cut(s) 148, 173
XceI RCATGY 2 cut(s) 319, 440
XmiI GTMKAC 2 cut(s) 120, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.