Prupe.1G156200_v2.0.a1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015252
Physical Location & Seq
Reverse (-)
12346602 .. 12348788
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G156200.1

Sequence Viewer

Length: 552 bp
ATGGTTTTGGTGGTGAGAGTTTTCTTGGCTGTGGTGCTGATGGTGATGGCTGCTCTGAAGGTATCCCATGCAGCTGTTCACAAGGTGGGAGACTCCGCAGGGTGGACCACCATTGGCGGTGTCGACTACAAGAAGTGGGCTGCCTCTAAGACTTTTCATGTTGGTGATGTTATCAAGTTCGAGTACAATTCTCAATTTCACAACGTAATGCGCGTTACACACCCCATGTACCAGTCATGTAATGCCACAGTCCCCTTGGACTCCTATGCCACTGGAAACGACACCATCACAATCACCACCAAAGGCCACCACTTCTTCATCTGTGGAATCCCCGGTCACTGCCAAGCCGGCCAGAAGGTCGACATCAACGTGCTCCGCCATCCTTCTGCAGCAGCTCCAACTCCTGCATTAGCCTCTCCTGCTGTTCCTGTTGCCCATGCACCGGCACCAGGTCCCAACATGGCTGCTCCATTAAAATCTGTGAAGGGGCAGTTTGTTGTGCTAGGGTTGGCAATTGCAACACTTGCTGTTCTTGTGTCTGGTCTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

184

Amino Acids

19.19

Weight (kDa)

9.41

Isoelectric Point (pI)

27.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26330
fragaria_vesca FvH4_4g15140
malus_domestica MD13G1189000.v1.1 MD16G1189800.v1.1
prunus_persica Prupe.1G156200_v2.0.a1
pyrus_communis pycom13g16340
rosa_chinensis RchiOBHm_Chr4g0416731
rosa_laevigata RLG00000007957
rosa_multiflora Rmu_sc0005655.1_g000002
rosa_roxburghii Rroxscaffold_5G00360600
rosa_rugosa Rorug04G0144200
rosa_samantha Rh4AG206900 Rh4BG204100 Rh4CG217900 Rh4DG204000
rosa_wichuraiana Rw4G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 445
AccI GTMKAC 2 cut(s) 123, 360
AccII CGCG 1 cut(s) 213
AciI CCGC 3 cut(s) 96, 117, 376
AcoI YGGCCR 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 85
AfaI GTAC 2 cut(s) 185, 230
AfiI CCNNNNNNNGG 3 cut(s) 102, 442, 449
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 2 cut(s) 74, 395
AluI AGCT 2 cut(s) 74, 395
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 84
AoxI GGCC 2 cut(s) 304, 349
ApeKI GCWGC 6 cut(s) 50, 71, 140, 389, 392, 464
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 2 cut(s) 105, 452
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 4 cut(s) 25, 55, 176, 286
AvaII GGWCC 2 cut(s) 105, 452
BanI GGYRCC 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 6 cut(s) 37, 83, 127, 401, 404, 451
BccI CCATC 4 cut(s) 34, 40, 293, 387
BciT130I CCWGG 1 cut(s) 450
BciVI GTATCC 1 cut(s) 73
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 503
BfmI CTRYAG 1 cut(s) 387
BfuI GTATCC 1 cut(s) 73
BglI GCCNNNNNGGC 1 cut(s) 348
BisI GCNGC 6 cut(s) 51, 72, 141, 390, 393, 465
BlsI GCNGC 6 cut(s) 52, 73, 142, 391, 394, 466
Bme1390I CCNGG 2 cut(s) 333, 450
Bme18I GGWCC 2 cut(s) 105, 452
BmgT120I GGNCC 2 cut(s) 105, 452
BmiI GGNNCC 2 cut(s) 447, 454
BmrFI CCNGG 2 cut(s) 333, 450
BpuMI CCSGG 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 255, 331
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 442, 449
Bse118I RCCGGY 2 cut(s) 347, 442
Bse1I ACTGG 2 cut(s) 232, 277
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 2 cut(s) 255, 331
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 3 cut(s) 102, 442, 449
BseNI ACTGG 2 cut(s) 232, 277
BseXI GCAGC 6 cut(s) 37, 83, 127, 401, 404, 451
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 2 cut(s) 306, 351
BshNI GGYRCC 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 3 cut(s) 333, 348, 443
BslFI GGGAC 2 cut(s) 236, 438
BslI CCNNNNNNNGG 3 cut(s) 102, 442, 449
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 2 cut(s) 236, 438
BsnI GGCC 2 cut(s) 306, 351
Bsp1286I GDGCHC 1 cut(s) 375
BspACI CCGC 3 cut(s) 96, 117, 376
BspANI GGCC 2 cut(s) 306, 351
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 447, 454
BspMAI CTGCAG 1 cut(s) 391
BspT107I GGYRCC 1 cut(s) 445
BsrFI RCCGGY 2 cut(s) 347, 442
BsrI ACTGG 2 cut(s) 232, 277
BssAI RCCGGY 2 cut(s) 347, 442
BssECI CCNNGG 2 cut(s) 255, 331
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 1 cut(s) 250
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 147, 549
BstF5I GGATG 1 cut(s) 379
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 84
BstMWI GCNNNNNNNGC 3 cut(s) 348, 419, 524
BstNI CCWGG 1 cut(s) 450
BstSCI CCNGG 2 cut(s) 331, 448
BstSFI CTRYAG 1 cut(s) 387
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 6 cut(s) 37, 83, 127, 401, 404, 451
BsuI GTATCC 1 cut(s) 73
BsuRI GGCC 2 cut(s) 306, 351
BtsCI GGATG 1 cut(s) 379
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 270, 337
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 1 cut(s) 213
Cfr10I RCCGGY 2 cut(s) 347, 442
Cfr13I GGNCC 2 cut(s) 105, 452
CsiI ACCWGGT 1 cut(s) 448
Csp6I GTAC 2 cut(s) 184, 229
CviAII CATG 6 cut(s) 68, 158, 226, 237, 437, 460
CviQI GTAC 2 cut(s) 184, 229
DdeI CTNAG 2 cut(s) 147, 549
DraIII CACNNNGTG 1 cut(s) 85
EaeI YGGCCR 1 cut(s) 349
EciI GGCGGA 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 255
Eco47I GGWCC 2 cut(s) 105, 452
Eco57I CTGAAG 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 6 cut(s) 71, 161, 229, 240, 440, 463
FaiI YATR 7 cut(s) 69, 159, 227, 238, 267, 438, 461
FaqI GGGAC 2 cut(s) 236, 438
FatI CATG 6 cut(s) 67, 157, 225, 236, 436, 459
FblI GTMKAC 2 cut(s) 123, 360
Fnu4HI GCNGC 6 cut(s) 51, 72, 141, 390, 393, 465
FokI GGATG 1 cut(s) 366
Fsp4HI GCNGC 6 cut(s) 51, 72, 141, 390, 393, 465
FspBI CTAG 1 cut(s) 503
GlaI GCGC 1 cut(s) 212
GluI GCNGC 6 cut(s) 51, 72, 141, 390, 393, 465
HaeIII GGCC 2 cut(s) 306, 351
HapII CCGG 3 cut(s) 333, 348, 443
HhaI GCGC 1 cut(s) 213
Hin1II CATG 6 cut(s) 71, 161, 229, 240, 440, 463
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HincII GTYRAC 2 cut(s) 124, 361
HindII GTYRAC 2 cut(s) 124, 361
HinfI GANTC 3 cut(s) 92, 260, 327
HpaII CCGG 3 cut(s) 333, 348, 443
HphI GGTGA 4 cut(s) 25, 55, 176, 286
Hpy166II GTNNAC 4 cut(s) 79, 105, 124, 361
Hpy188I TCNGA 1 cut(s) 57
Hpy8I GTNNAC 4 cut(s) 79, 105, 124, 361
HpyAV CCTTC 4 cut(s) 52, 349, 393, 478
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 2 cut(s) 204, 369
HpyCH4V TGCA 5 cut(s) 71, 389, 407, 440, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 348, 419, 524
HpyF3I CTNAG 2 cut(s) 147, 549
HpySE526I ACGT 2 cut(s) 204, 369
Hsp92II CATG 6 cut(s) 71, 161, 229, 240, 440, 463
HspAI GCGC 1 cut(s) 211
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
LmnI GCTCC 3 cut(s) 378, 400, 472
Lsp1109I GCAGC 6 cut(s) 37, 83, 127, 401, 404, 451
MabI ACCWGGT 1 cut(s) 448
MaeI CTAG 1 cut(s) 503
MaeII ACGT 2 cut(s) 204, 369
MaeIII GTNAC 2 cut(s) 214, 335
MboII GAAGA 1 cut(s) 307
MfeI CAATTG 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 3 cut(s) 187, 194, 513
MlyI GAGTC 2 cut(s) 86, 254
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 2 cut(s) 154, 424
MroNI GCCGGC 1 cut(s) 347
MseI TTAA 1 cut(s) 473
MslI CAYNNNNRTG 2 cut(s) 162, 368
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 3 cut(s) 333, 348, 443
MspR9I CCNGG 2 cut(s) 333, 450
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 450
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 3 cut(s) 348, 419, 524
NaeI GCCGGC 1 cut(s) 349
NciI CCSGG 1 cut(s) 333
NgoMIV GCCGGC 1 cut(s) 347
NlaIII CATG 6 cut(s) 71, 161, 229, 240, 440, 463
NlaIV GGNNCC 2 cut(s) 447, 454
NmuCI GTSAC 1 cut(s) 335
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 366
PdiI GCCGGC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 327
PkrI GCNGC 6 cut(s) 52, 73, 142, 391, 394, 466
PleI GAGTC 2 cut(s) 86, 254
PpsI GAGTC 2 cut(s) 86, 254
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 447, 454
PspPI GGNCC 2 cut(s) 105, 452
PspPPI RGGWCCY 1 cut(s) 452
PstI CTGCAG 1 cut(s) 391
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 2 cut(s) 185, 230
RsaNI GTAC 2 cut(s) 184, 229
RseI CAYNNNNRTG 2 cut(s) 162, 368
SalI GTCGAC 2 cut(s) 122, 359
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 6 cut(s) 51, 72, 141, 390, 393, 465
Sau96I GGNCC 2 cut(s) 105, 452
SchI GAGTC 2 cut(s) 86, 254
ScrFI CCNGG 2 cut(s) 333, 450
SduI GDGCHC 1 cut(s) 375
SetI ASST 8 cut(s) 63, 76, 87, 207, 360, 372, 397, 454
SexAI ACCWGGT 1 cut(s) 448
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 2 cut(s) 105, 452
SmiMI CAYNNNNRTG 2 cut(s) 162, 368
Sse9I AATT 3 cut(s) 187, 194, 513
SsiI CCGC 3 cut(s) 96, 117, 376
SspMI CTAG 1 cut(s) 503
StyD4I CCNGG 2 cut(s) 331, 448
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 2 cut(s) 207, 372
TaqI TCGA 3 cut(s) 123, 180, 360
TasI AATT 3 cut(s) 187, 194, 513
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 2 cut(s) 277, 344
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 6 cut(s) 50, 71, 140, 389, 392, 464
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 146, 307
TspRI CASTG 2 cut(s) 277, 344
VpaK11BI GGWCC 2 cut(s) 105, 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmiI GTMKAC 2 cut(s) 123, 360
XspI CTAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.