Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003450

Physical Location & Seq

Genomic Coordinates Reverse (-)

24013307 .. 24018180

Gene Structure 4874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0144200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGAAGGAGATGCAGAGGTCGAAGGAGGGACAGATGAAGAAGATGCAGAGGAAGAAGACGGAGGTTTCAAAGTTGGGAAAGTTGAAATGTAGGGATGAACATGATTCTGTACAAGATGTAAAAGCAGATGACCTACGGCAGATGCTTCTAGCCATGACAGAGGAGGGGTTGGCTGTTGTTGCAATATTGAGGCACTTTAGATACCCTTGCAGGTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0015645 GO:0016020 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0042221 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

73

Amino Acids

8.64

Weight (kDa)

9.64

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26240 AT5G26240
fragaria_vesca	FvH4_4g15130 FvH4_4g15130
malus_domestica	MD13G1188900.v1.1 MD16G1189700.v1.1
prunus_persica	Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1
pyrus_communis	pycom13g16330 pycom16g15940
rosa_chinensis	RchiOBHm_Chr3g0497631 RchiOBHm_Chr4g0416741
rosa_laevigata	RLG00000007956 RLG00000023042
rosa_multiflora	Rmu_co8329069.1_g000001 Rmu_sc0023201.1_g000001 Rmu_sc0025051.1_g000001 Rmu_sc0038555.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360610 Rroxscaffold_6G00395290
rosa_rugosa	Rorug04G0144200 Rorug04G0144200 Rorug04G0144200 Rorug04G0144200
rosa_samantha	Rh1BG229600 Rh1CG042200 Rh1DG027400 Rh4AG207000 Rh4BG204200 Rh7CG094800
rosa_wichuraiana	Rw4G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	111
AgsI	TTSAA	2 cut(s)	69, 85
BbsI	GAAGAC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	201
BmsI	GCATC	2 cut(s)	33, 132
BpiI	GAAGAC	1 cut(s)	62
BseGI	GGATG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	42
Bsp1407I	TGTACA	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	109
BstAUI	TGTACA	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	2 cut(s)	101, 154
CviJI	RGCY	2 cut(s)	152, 173
CviKI_1	RGCY	2 cut(s)	152, 173
CviQI	GTAC	1 cut(s)	110
FaeI	CATG	2 cut(s)	104, 157
FaiI	YATR	2 cut(s)	102, 155
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	2 cut(s)	100, 153
FokI	GGATG	1 cut(s)	107
FspBI	CTAG	1 cut(s)	149
Hin1II	CATG	2 cut(s)	104, 157
HinfI	GANTC	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	16
HpyCH4V	TGCA	4 cut(s)	13, 46, 182, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
Hsp92II	CATG	2 cut(s)	104, 157
LpnPI	CCDG	1 cut(s)	196
LweI	GCATC	2 cut(s)	33, 132
MaeI	CTAG	1 cut(s)	149
MboII	GAAGA	4 cut(s)	49, 52, 64, 67
MnlI	CCTC	7 cut(s)	9, 19, 42, 55, 154, 157, 183
MwoI	GCNNNNNNNGC	1 cut(s)	179
NlaIII	CATG	2 cut(s)	104, 157
PfeI	GAWTC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SetI	ASST	4 cut(s)	20, 66, 135, 215
SfaNI	GCATC	2 cut(s)	33, 132
SgeI	CNNG	4 cut(s)	113, 125, 161, 166
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	1 cut(s)	149
TaqI	TCGA	1 cut(s)	20
TatI	WGTACW	1 cut(s)	109
TfiI	GAWTC	1 cut(s)	104
TspDTI	ATGAA	4 cut(s)	17, 50, 111, 205
TspGWI	ACGGA	1 cut(s)	74
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.