Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025051.1

Orthogroup ID

OG0003450

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 3074

Gene Structure 3073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025051.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1132 bp

atgttaagttttcggaatttgtttcggttgttttcaggcaccggattagcagctgttttcatcaatatttcggttgagaactttgcaggctggaaatttgcattgacatttgctataatacaaaaatcatatctggccggtttcgtggtgtacatattaatcaacttagttttggttttttcctctgtatatatcgttacacaatttgcaccggcagcagctgggtctggtattccagaaatcaaggggtatttaaatggggtcgacatacacggtgtcctacttttcagaacattgattggaaagatatttggtagcattggttcagtgggaggaggtctagctttaggcaaagaaggtcctcttgttcatactggtgcttgtattgcatccttgcttggacaaggtggatctacaaaataccatctcagatccaggtggctacaaatttttaatagtgaccgagatcgccgtgatcttgtaacctgtggatgtgcagctggagtttctgctgctttcagagctcctgtaggtggtgtactatttgcactggaagaagttacatcttggtggaggagtcaacttatgtggcgtgtgtttttcacttctgctattgtggccgttgtagtgcgtactgcaatgggatggtgcaaaagtggaaaatgtggacattttggctcaggtggcttcataatatgggatgtatcagatggtcaagaggactattcttttgaggagttcttgccaatggcggttattggggtcattggaggtttactgggagccttgtttaaccagcttacattttacattgctcactggcgccgaaattatttgcacaagaaagggaatcgagtcaagataattgaagcctgtctcatctctctgataacgtcaattatttccttcggtttaccacttttaagaaaatgtagtcaatgccctgaagcagatccagattctggaattgaatgcccgcggcctccaggaatgtatggaaattatgttaatttttattgcagcaaggacagggaatacaatgatcttgcaactattttcttcaatactcaggatgatgcgatcaggaatttgtttagtgcaaaaacaatacatgagtacagtgcccaaagtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

377

Amino Acids

41.32

Weight (kDa)

8.86

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26240 AT5G26240
fragaria_vesca	FvH4_4g15130 FvH4_4g15130
malus_domestica	MD13G1188900.v1.1 MD16G1189700.v1.1
prunus_persica	Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1
pyrus_communis	pycom13g16330 pycom16g15940
rosa_chinensis	RchiOBHm_Chr3g0497631 RchiOBHm_Chr4g0416741
rosa_laevigata	RLG00000007956 RLG00000023042
rosa_multiflora	Rmu_co8329069.1_g000001 Rmu_sc0023201.1_g000001 Rmu_sc0025051.1_g000001 Rmu_sc0038555.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360610 Rroxscaffold_6G00395290
rosa_rugosa	Rorug04G0144200 Rorug04G0144200 Rorug04G0144200 Rorug04G0144200
rosa_samantha	Rh1BG229600 Rh1CG042200 Rh1DG027400 Rh4AG207000 Rh4BG204200 Rh7CG094800
rosa_wichuraiana	Rw4G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	38, 822
AccB7I	CCANNNNNTGG	1 cut(s)	962
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	1 cut(s)	979
AciI	CCGC	3 cut(s)	752, 977, 979
AclWI	GGATC	3 cut(s)	418, 426, 947
AcoI	YGGCCR	2 cut(s)	135, 618
AcsI	RAATTY	4 cut(s)	16, 95, 447, 1087
AcuI	CTGAAG	1 cut(s)	966
AcyI	GRCGYC	1 cut(s)	823
AfaI	GTAC	4 cut(s)	152, 540, 634, 1118
AfiI	CCNNNNNNNGG	2 cut(s)	533, 962
AgsI	TTSAA	3 cut(s)	869, 971, 1063
AjnI	CCWGG	2 cut(s)	434, 985
AluBI	AGCT	6 cut(s)	53, 221, 344, 500, 524, 799
AluI	AGCT	6 cut(s)	53, 221, 344, 500, 524, 799
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	1 cut(s)	881
AlwI	GGATC	3 cut(s)	418, 426, 947
AlwNI	CAGNNNCTG	2 cut(s)	221, 962
AoxI	GGCC	3 cut(s)	135, 618, 980
ApeKI	GCWGC	6 cut(s)	50, 215, 218, 497, 512, 1020
ApoI	RAATTY	4 cut(s)	16, 95, 447, 1087
ArsI	GACNNNNNNTTYG	2 cut(s)	713, 745
AseI	ATTAAT	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	825
AspS9I	GGNCC	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	1126
BanI	GGYRCC	2 cut(s)	38, 822
BanII	GRGCYC	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	6 cut(s)	62, 227, 230, 499, 509, 1032
BccI	CCATC	3 cut(s)	432, 639, 704
BceAI	ACGGC	2 cut(s)	456, 605
BciT130I	CCWGG	2 cut(s)	436, 987
BcoDI	GTCTC	1 cut(s)	881
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	826
BisI	GCNGC	7 cut(s)	51, 216, 219, 498, 513, 980, 1021
BlsI	GCNGC	7 cut(s)	52, 217, 220, 499, 514, 981, 1022
Bme1390I	CCNGG	2 cut(s)	436, 987
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	3 cut(s)	40, 784, 824
BmrFI	CCNGG	2 cut(s)	436, 987
BmrI	ACTGGG	1 cut(s)	788
BmsI	GCATC	2 cut(s)	398, 1066
BmuI	ACTGGG	1 cut(s)	788
BpmI	CTGGAG	2 cut(s)	522, 969
Bpu10I	CCTNAGC	1 cut(s)	679
BsaHI	GRCGYC	1 cut(s)	823
BsaJI	CCNNGG	1 cut(s)	977
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 962
Bse118I	RCCGGY	2 cut(s)	137, 211
Bse1I	ACTGG	4 cut(s)	379, 555, 783, 824
Bse3DI	GCAATG	2 cut(s)	645, 810
BseBI	CCWGG	2 cut(s)	436, 987
BseDI	CCNNGG	1 cut(s)	977
BseGI	GGATG	5 cut(s)	389, 497, 650, 706, 1078
BseLI	CCNNNNNNNGG	2 cut(s)	533, 962
BseMI	GCAATG	2 cut(s)	645, 810
BseMII	CTCAG	3 cut(s)	442, 693, 1082
BseNI	ACTGG	4 cut(s)	379, 555, 783, 824
BseRI	GAGGAG	3 cut(s)	348, 589, 749
BseSI	GKGCMC	1 cut(s)	1126
BseXI	GCAGC	6 cut(s)	62, 227, 230, 499, 509, 1032
BseYI	CCCAGC	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	979
BshFI	GGCC	3 cut(s)	137, 620, 982
BshNI	GGYRCC	2 cut(s)	38, 822
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	3 cut(s)	42, 138, 212
BslI	CCNNNNNNNGG	2 cut(s)	533, 962
BsmAI	GTCTC	1 cut(s)	881
BsmI	GAATGC	1 cut(s)	977
BsnI	GGCC	3 cut(s)	137, 620, 982
Bsp1286I	GDGCHC	2 cut(s)	526, 1126
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	7 cut(s)	410, 431, 466, 475, 952, 1042, 1080
BspACI	CCGC	3 cut(s)	752, 977, 979
BspANI	GGCC	3 cut(s)	137, 620, 982
BspCNI	CTCAG	3 cut(s)	441, 692, 1081
BspFNI	CGCG	1 cut(s)	979
BspLI	GGNNCC	3 cut(s)	40, 784, 824
BspPI	GGATC	3 cut(s)	418, 426, 947
BspT107I	GGYRCC	2 cut(s)	38, 822
BsrDI	GCAATG	2 cut(s)	645, 810
BsrFI	RCCGGY	2 cut(s)	137, 211
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	4 cut(s)	379, 555, 783, 824
BssAI	RCCGGY	2 cut(s)	137, 211
BssECI	CCNNGG	1 cut(s)	977
BssMI	GATC	7 cut(s)	410, 431, 466, 475, 952, 1042, 1080
BssNI	GRCGYC	1 cut(s)	823
Bst2UI	CCWGG	2 cut(s)	436, 987
Bst4CI	ACNGT	2 cut(s)	275, 1121
BstACI	GRCGYC	1 cut(s)	823
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	88, 977
BstDEI	CTNAG	4 cut(s)	166, 428, 679, 1068
BstDSI	CCRYGG	1 cut(s)	977
BstF5I	GGATG	5 cut(s)	389, 497, 650, 706, 1078
BstFNI	CGCG	1 cut(s)	979
BstH2I	RGCGCY	1 cut(s)	826
BstHHI	GCGC	1 cut(s)	825
BstKTI	GATC	7 cut(s)	413, 434, 469, 478, 955, 1045, 1083
BstMAI	GTCTC	1 cut(s)	881
BstMBI	GATC	7 cut(s)	410, 431, 466, 475, 952, 1042, 1080
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 386, 521, 617, 684
BstNI	CCWGG	2 cut(s)	436, 987
BstSCI	CCNGG	2 cut(s)	434, 985
BstSFI	CTRYAG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	1126
BstUI	CGCG	1 cut(s)	979
BstV1I	GCAGC	6 cut(s)	62, 227, 230, 499, 509, 1032
BstX2I	RGATCY	3 cut(s)	410, 431, 952
BstYI	RGATCY	3 cut(s)	410, 431, 952
BsuRI	GGCC	3 cut(s)	137, 620, 982
BtgI	CCRYGG	1 cut(s)	977
BtsCI	GGATG	5 cut(s)	389, 497, 650, 706, 1078
BtsIMutI	CAGTG	4 cut(s)	333, 548, 817, 1126
Cac8I	GCNNGC	2 cut(s)	88, 977
CaiI	CAGNNNCTG	2 cut(s)	221, 962
CfoI	GCGC	1 cut(s)	825
Cfr10I	RCCGGY	2 cut(s)	137, 211
Cfr13I	GGNCC	1 cut(s)	359
Cfr42I	CCGCGG	1 cut(s)	980
Csp6I	GTAC	4 cut(s)	151, 539, 633, 1117
CspCI	CAANNNNNGTGG	2 cut(s)	569, 604
CviAII	CATG	1 cut(s)	1112
CviQI	GTAC	4 cut(s)	151, 539, 633, 1117
DdeI	CTNAG	4 cut(s)	166, 428, 679, 1068
DinI	GGCGCC	1 cut(s)	824
DpnI	GATC	7 cut(s)	412, 433, 468, 477, 954, 1044, 1082
DpnII	GATC	7 cut(s)	410, 431, 466, 475, 952, 1042, 1080
DraI	TTTAAA	1 cut(s)	255
EaeI	YGGCCR	2 cut(s)	135, 618
Ecl136II	GAGCTC	1 cut(s)	524
Eco24I	GRGCYC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	966
EcoICRI	GAGCTC	1 cut(s)	524
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	434, 985
EcoT38I	GRGCYC	1 cut(s)	526
EgeI	GGCGCC	1 cut(s)	824
EheI	GGCGCC	1 cut(s)	824
FaeI	CATG	1 cut(s)	1115
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FatI	CATG	1 cut(s)	1111
FauI	CCCGC	1 cut(s)	984
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	7 cut(s)	51, 216, 219, 498, 513, 980, 1021
FokI	GGATG	5 cut(s)	376, 504, 657, 713, 1085
FriOI	GRGCYC	1 cut(s)	526
Fsp4HI	GCNGC	7 cut(s)	51, 216, 219, 498, 513, 980, 1021
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	1 cut(s)	824
GluI	GCNGC	7 cut(s)	51, 216, 219, 498, 513, 980, 1021
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	2 cut(s)	522, 969
HaeII	RGCGCY	1 cut(s)	826
HaeIII	GGCC	3 cut(s)	137, 620, 982
HapII	CCGG	3 cut(s)	42, 138, 212
HhaI	GCGC	1 cut(s)	825
Hin1I	GRCGYC	1 cut(s)	823
Hin1II	CATG	1 cut(s)	1115
Hin6I	GCGC	1 cut(s)	823
HinP1I	GCGC	1 cut(s)	823
HincII	GTYRAC	2 cut(s)	265, 581
HindII	GTYRAC	2 cut(s)	265, 581
HinfI	GANTC	4 cut(s)	577, 850, 855, 959
HpaII	CCGG	3 cut(s)	42, 138, 212
Hpy166II	GTNNAC	7 cut(s)	151, 265, 539, 581, 668, 776, 914
Hpy188I	TCNGA	6 cut(s)	15, 290, 431, 521, 709, 888
Hpy188III	TCNNGA	7 cut(s)	236, 716, 859, 956, 963, 1070, 1084
Hpy8I	GTNNAC	7 cut(s)	151, 265, 539, 581, 668, 776, 914
HpyAV	CCTTC	2 cut(s)	350, 916
HpyCH4III	ACNGT	2 cut(s)	275, 1121
HpyCH4IV	ACGT	1 cut(s)	893
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 386, 521, 617, 684
HpyF3I	CTNAG	4 cut(s)	166, 428, 679, 1068
HpySE526I	ACGT	1 cut(s)	893
Hsp92I	GRCGYC	1 cut(s)	823
Hsp92II	CATG	1 cut(s)	1115
HspAI	GCGC	1 cut(s)	823
KasI	GGCGCC	1 cut(s)	822
KspI	CCGCGG	1 cut(s)	980
Kzo9I	GATC	7 cut(s)	410, 431, 466, 475, 952, 1042, 1080
LmnI	GCTCC	2 cut(s)	529, 782
Lsp1109I	GCAGC	6 cut(s)	62, 227, 230, 499, 509, 1032
LweI	GCATC	2 cut(s)	398, 1066
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	1 cut(s)	893
MaeIII	GTNAC	4 cut(s)	196, 458, 481, 559
MalI	GATC	7 cut(s)	412, 433, 468, 477, 954, 1044, 1082
MboI	GATC	7 cut(s)	410, 431, 466, 475, 952, 1042, 1080
MboII	GAAGA	2 cut(s)	566, 1051
MflI	RGATCY	3 cut(s)	410, 431, 952
MhlI	GDGCHC	2 cut(s)	526, 1126
Mly113I	GGCGCC	1 cut(s)	823
MlyI	GAGTC	2 cut(s)	586, 864
MnlI	CCTC	9 cut(s)	193, 326, 329, 372, 567, 712, 727, 764, 993
MseI	TTAA	7 cut(s)	5, 158, 254, 453, 792, 923, 1008
MslI	CAYNNNNRTG	2 cut(s)	375, 568
MspA1I	CMGCKG	4 cut(s)	53, 221, 500, 979
MspI	CCGG	3 cut(s)	42, 138, 212
MspR9I	CCNGG	2 cut(s)	436, 987
Mva1269I	GAATGC	1 cut(s)	977
MvaI	CCWGG	2 cut(s)	436, 987
MvnI	CGCG	1 cut(s)	979
MwoI	GCNNNNNNNGC	5 cut(s)	215, 386, 521, 617, 684
NarI	GGCGCC	1 cut(s)	823
NdeII	GATC	7 cut(s)	410, 431, 466, 475, 952, 1042, 1080
NlaIII	CATG	1 cut(s)	1115
NlaIV	GGNNCC	3 cut(s)	40, 784, 824
NmuCI	GTSAC	1 cut(s)	458
PctI	GAATGC	1 cut(s)	977
PfeI	GAWTC	2 cut(s)	850, 959
PflMI	CCANNNNNTGG	1 cut(s)	962
PfoI	TCCNGGA	1 cut(s)	985
PkrI	GCNGC	7 cut(s)	52, 217, 220, 499, 514, 981, 1022
PleI	GAGTC	2 cut(s)	585, 863
PluTI	GGCGCC	1 cut(s)	826
PpsI	GAGTC	2 cut(s)	585, 863
PpuMI	RGGWCCY	1 cut(s)	359
PshBI	ATTAAT	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	526
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	434, 985
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	2 cut(s)	434, 985
PspN4I	GGNNCC	3 cut(s)	40, 784, 824
PspPI	GGNCC	1 cut(s)	359
PspPPI	RGGWCCY	1 cut(s)	359
PsrI	GAACNNNNNNTAC	2 cut(s)	307, 339
PstNI	CAGNNNCTG	2 cut(s)	221, 962
PsuI	RGATCY	3 cut(s)	410, 431, 952
PvuII	CAGCTG	3 cut(s)	53, 221, 500
RsaI	GTAC	4 cut(s)	152, 540, 634, 1118
RsaNI	GTAC	4 cut(s)	151, 539, 633, 1117
RseI	CAYNNNNRTG	2 cut(s)	375, 568
SacI	GAGCTC	1 cut(s)	526
SacII	CCGCGG	1 cut(s)	980
SalI	GTCGAC	1 cut(s)	263
SaqAI	TTAA	7 cut(s)	5, 158, 254, 453, 792, 923, 1008
SatI	GCNGC	7 cut(s)	51, 216, 219, 498, 513, 980, 1021
Sau3AI	GATC	7 cut(s)	410, 431, 466, 475, 952, 1042, 1080
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	2 cut(s)	586, 864
ScrFI	CCNGG	2 cut(s)	436, 987
SduI	GDGCHC	2 cut(s)	526, 1126
SfaNI	GCATC	2 cut(s)	398, 1066
SfcI	CTRYAG	1 cut(s)	528
SfoI	GGCGCC	1 cut(s)	824
Sfr303I	CCGCGG	1 cut(s)	980
SgrBI	CCGCGG	1 cut(s)	980
SinI	GGWCC	1 cut(s)	359
SmiI	ATTTAAAT	1 cut(s)	255
SmiMI	CAYNNNNRTG	2 cut(s)	375, 568
SsiI	CCGC	3 cut(s)	752, 977, 979
SspDI	GGCGCC	1 cut(s)	822
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	1 cut(s)	341
SstI	GAGCTC	1 cut(s)	526
StyD4I	CCNGG	2 cut(s)	434, 985
SwaI	ATTTAAAT	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	275, 1121
TaiI	ACGT	1 cut(s)	896
TaqI	TCGA	2 cut(s)	264, 853
TaqII	GACCGA	1 cut(s)	477
TatI	WGTACW	3 cut(s)	150, 538, 1116
TauI	GCSGC	1 cut(s)	982
TfiI	GAWTC	2 cut(s)	850, 959
Tru1I	TTAA	7 cut(s)	5, 158, 254, 453, 792, 923, 1008
Tru9I	TTAA	7 cut(s)	5, 158, 254, 453, 792, 923, 1008
TscAI	CASTG	4 cut(s)	333, 555, 824, 1126
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	6 cut(s)	50, 215, 218, 497, 512, 1020
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	3 cut(s)	49, 359, 679
TspRI	CASTG	4 cut(s)	333, 555, 824, 1126
Van91I	CCANNNNNTGG	1 cut(s)	962
VpaK11BI	GGWCC	1 cut(s)	359
VspI	ATTAAT	1 cut(s)	158
XapI	RAATTY	4 cut(s)	16, 95, 447, 1087
XmiI	GTMKAC	1 cut(s)	264
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.