Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003450

Physical Location & Seq

Genomic Coordinates Forward (+)

16354084 .. 16354912

Gene Structure 829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCCCGCAACAGAACCGGGCCGCACCGATATTTGTCGGATTGTTTGTTCAATGATTTGCATGTTCTTCTCTGGCTTGGCAACAGCAGTTCCGCAGGTAAGAAAGTACTCACCTTTACACTATTTGCATCGGCAGCAGCTGAGTCTGGTATTCCAGAAATCAAGGGGAGTTTAAATGGAGTTGGCAATGGCATACATGGTGTCCTACTTTTCAGAACATTGATTGGAAAGATTTTTGTGAGCCTTGGTTCAGTGGGAGGTGGTTTAGCTTTACGCAAAGAAGGTCCTCTTGATAAGGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

101

Amino Acids

10.66

Weight (kDa)

10.12

Isoelectric Point (pI)

16.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26240 AT5G26240
fragaria_vesca	FvH4_4g15130 FvH4_4g15130
malus_domestica	MD13G1188900.v1.1 MD16G1189700.v1.1
prunus_persica	Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1
pyrus_communis	pycom13g16330 pycom16g15940
rosa_chinensis	RchiOBHm_Chr3g0497631 RchiOBHm_Chr4g0416741
rosa_laevigata	RLG00000007956 RLG00000023042
rosa_multiflora	Rmu_co8329069.1_g000001 Rmu_sc0023201.1_g000001 Rmu_sc0025051.1_g000001 Rmu_sc0038555.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360610 Rroxscaffold_6G00395290
rosa_rugosa	Rorug04G0144200 Rorug04G0144200 Rorug04G0144200 Rorug04G0144200
rosa_samantha	Rh1BG229600 Rh1CG042200 Rh1DG027400 Rh4AG207000 Rh4BG204200 Rh7CG094800
rosa_wichuraiana	Rw4G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AciI	CCGC	3 cut(s)	7, 23, 93
AfaI	GTAC	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	52
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
AluBI	AGCT	2 cut(s)	140, 269
AluI	AGCT	2 cut(s)	140, 269
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	3, 20
ApeKI	GCWGC	2 cut(s)	134, 137
AspS9I	GGNCC	3 cut(s)	4, 20, 284
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	146, 149
BcnI	CCSGG	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	3 cut(s)	23, 135, 138
BlsI	GCNGC	3 cut(s)	24, 136, 139
BmcAI	AGTACT	1 cut(s)	108
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	3 cut(s)	4, 20, 284
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	146, 149
BshFI	GGCC	2 cut(s)	5, 22
BsiSI	CCGG	1 cut(s)	18
BsnI	GGCC	2 cut(s)	5, 22
BspACI	CCGC	3 cut(s)	7, 23, 93
BspANI	GGCC	2 cut(s)	5, 22
BspCNI	CTCAG	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	146, 149
BsuRI	GGCC	2 cut(s)	5, 22
BtsIMutI	CAGTG	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	140
Cfr13I	GGNCC	3 cut(s)	4, 20, 284
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	2 cut(s)	62, 197
CviJI	RGCY	6 cut(s)	5, 22, 76, 140, 243, 269
CviKI_1	RGCY	6 cut(s)	5, 22, 76, 140, 243, 269
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	141
DraI	TTTAAA	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	2 cut(s)	65, 200
FaiI	YATR	3 cut(s)	63, 194, 198
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FatI	CATG	2 cut(s)	61, 196
FauI	CCCGC	1 cut(s)	14
Fnu4HI	GCNGC	3 cut(s)	23, 135, 138
Fsp4HI	GCNGC	3 cut(s)	23, 135, 138
GluI	GCNGC	3 cut(s)	23, 135, 138
HaeIII	GGCC	2 cut(s)	5, 22
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	2 cut(s)	65, 200
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	40, 215
Hpy188III	TCNNGA	2 cut(s)	155, 290
HpyAV	CCTTC	1 cut(s)	275
HpyCH4V	TGCA	2 cut(s)	61, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	65, 200
LpnPI	CCDG	5 cut(s)	31, 58, 81, 132, 168
Lsp1109I	GCAGC	2 cut(s)	146, 149
LweI	GCATC	1 cut(s)	137
MboII	GAAGA	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	2 cut(s)	251, 297
MseI	TTAA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	134
NciI	CCSGG	1 cut(s)	19
NlaIII	CATG	2 cut(s)	65, 200
NspI	RCATGY	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	24, 136, 139
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	284
PspPI	GGNCC	3 cut(s)	4, 20, 284
PspPPI	RGGWCCY	1 cut(s)	284
PstNI	CAGNNNCTG	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	3 cut(s)	23, 135, 138
Sau96I	GGNCC	3 cut(s)	4, 20, 284
ScaI	AGTACT	1 cut(s)	108
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	7 cut(s)	100, 116, 142, 262, 271, 286, 300
SfaNI	GCATC	1 cut(s)	137
SinI	GGWCC	1 cut(s)	284
SsiI	CCGC	3 cut(s)	7, 23, 93
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	244
TatI	WGTACW	1 cut(s)	106
TauI	GCSGC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	2 cut(s)	134, 137
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	284
XceI	RCATGY	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.