Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8329069.1

Orthogroup ID

OG0003450

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 970

Gene Structure 970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8329069.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

tgcagcagcaggttctggtattccggaggtcaaagcttatttaaatggaatagatgcatattcaatactggctccaagcactctttttgtcaagatttttggttccattctttgtgtttctgccggatttgtggttggtaaagaaggccccatggtacatacaggtgcttgcatagcctctttgcttgggcagggcggttctcagaagtatcatttgacctggtcgtggctaagatacttcaaaaatgatcgtgaccgacgagacttgatcacatgtggtgctgcagctggtgtggctgctgcctttcgtgctccggttggcggtgttctttttgcccttgaagaagcagcttcatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0008150 GO:0008308 GO:0008509 GO:0009705 GO:0015075 GO:0015103 GO:0015108 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

118

Amino Acids

12.24

Weight (kDa)

8.55

Isoelectric Point (pI)

25.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26240 AT5G26240
fragaria_vesca	FvH4_4g15130 FvH4_4g15130
malus_domestica	MD13G1188900.v1.1 MD16G1189700.v1.1
prunus_persica	Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1
pyrus_communis	pycom13g16330 pycom16g15940
rosa_chinensis	RchiOBHm_Chr3g0497631 RchiOBHm_Chr4g0416741
rosa_laevigata	RLG00000007956 RLG00000023042
rosa_multiflora	Rmu_co8329069.1_g000001 Rmu_sc0023201.1_g000001 Rmu_sc0025051.1_g000001 Rmu_sc0038555.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360610 Rroxscaffold_6G00395290
rosa_rugosa	Rorug04G0144200 Rorug04G0144200 Rorug04G0144200 Rorug04G0144200
rosa_samantha	Rh1BG229600 Rh1CG042200 Rh1DG027400 Rh4AG207000 Rh4BG204200 Rh7CG094800
rosa_wichuraiana	Rw4G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	23
AciI	CCGC	2 cut(s)	196, 322
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	2 cut(s)	226, 321
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	64, 242, 342
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	36, 288, 351
AluI	AGCT	3 cut(s)	36, 288, 351
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	23
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	7 cut(s)	3, 6, 282, 285, 297, 300, 348
AspS9I	GGNCC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	6 cut(s)	15, 18, 269, 284, 287, 297
BciT130I	CCWGG	1 cut(s)	221
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	256
BfmI	CTRYAG	1 cut(s)	283
BisI	GCNGC	7 cut(s)	4, 7, 283, 286, 298, 301, 349
BlsI	GCNGC	7 cut(s)	5, 8, 284, 287, 299, 302, 350
Bme1390I	CCNGG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	3 cut(s)	73, 104, 149
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	2 cut(s)	23, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 321
Bse1I	ACTGG	1 cut(s)	73
BseAI	TCCGGA	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	226, 321
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	6 cut(s)	15, 18, 269, 284, 287, 297
BshFI	GGCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	314
BsiSI	CCGG	3 cut(s)	24, 124, 315
BslI	CCNNNNNNNGG	2 cut(s)	226, 321
BsmAI	GTCTC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp13I	TCCGGA	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	248, 268
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	2 cut(s)	196, 322
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	215
BspEI	TCCGGA	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	73, 104, 149
BspMAI	CTGCAG	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	248, 268
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	2 cut(s)	202, 231
BstDSI	CCRYGG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	251, 271
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	2 cut(s)	248, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 294, 309
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	283
BstV1I	GCAGC	6 cut(s)	15, 18, 269, 284, 287, 297
BsuRI	GGCC	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	170
CaiI	CAGNNNCTG	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	147
CsiI	ACCWGGT	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	3 cut(s)	152, 274, 355
CviJI	RGCY	8 cut(s)	36, 72, 148, 177, 230, 288, 297, 351
CviKI_1	RGCY	8 cut(s)	36, 72, 148, 177, 230, 288, 297, 351
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	2 cut(s)	202, 231
DpnI	GATC	2 cut(s)	250, 270
DpnII	GATC	2 cut(s)	248, 268
DraI	TTTAAA	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	151
EcoT22I	ATGCAT	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	2 cut(s)	155, 277
FaiI	YATR	6 cut(s)	59, 153, 160, 174, 275, 356
FatI	CATG	2 cut(s)	151, 273
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	7 cut(s)	4, 7, 283, 286, 298, 301, 349
Fsp4HI	GCNGC	7 cut(s)	4, 7, 283, 286, 298, 301, 349
GluI	GCNGC	7 cut(s)	4, 7, 283, 286, 298, 301, 349
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	3 cut(s)	24, 124, 315
Hin1II	CATG	2 cut(s)	155, 277
HindIII	AAGCTT	1 cut(s)	34
HpaII	CCGG	3 cut(s)	24, 124, 315
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	3 cut(s)	24, 92, 252
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	3, 57, 172, 285
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 294, 309
HpyF3I	CTNAG	2 cut(s)	202, 231
Hsp92II	CATG	2 cut(s)	155, 277
Kpn2I	TCCGGA	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	248, 268
LmnI	GCTCC	2 cut(s)	77, 317
LpnPI	CCDG	9 cut(s)	37, 54, 137, 148, 177, 206, 233, 274, 328
Lsp1109I	GCAGC	6 cut(s)	15, 18, 269, 284, 287, 297
LweI	GCATC	1 cut(s)	44
MabI	ACCWGGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	2 cut(s)	250, 270
MboI	GATC	2 cut(s)	248, 268
MboII	GAAGA	1 cut(s)	354
MhlI	GDGCHC	1 cut(s)	314
MnlI	CCTC	2 cut(s)	20, 188
Mph1103I	ATGCAT	1 cut(s)	59
MroI	TCCGGA	1 cut(s)	23
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	163
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	3 cut(s)	24, 124, 315
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	174, 294, 309
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	2 cut(s)	248, 268
NlaIII	CATG	2 cut(s)	155, 277
NlaIV	GGNNCC	3 cut(s)	73, 104, 149
NmuCI	GTSAC	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	59
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	257
PflFI	GACNNNGTC	1 cut(s)	221
PkrI	GCNGC	7 cut(s)	5, 8, 284, 287, 299, 302, 350
PscI	ACATGT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	73, 104, 149
PspPI	GGNCC	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	15
PsyI	GACNNNGTC	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	288
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	7 cut(s)	4, 7, 283, 286, 298, 301, 349
Sau3AI	GATC	2 cut(s)	248, 268
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	7 cut(s)	14, 31, 38, 167, 222, 290, 353
SexAI	ACCWGGT	1 cut(s)	219
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	1 cut(s)	283
SmiI	ATTTAAAT	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	163
SsiI	CCGC	2 cut(s)	196, 322
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	151
SwaI	ATTTAAAT	1 cut(s)	43
TaqII	GACCGA	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	7 cut(s)	3, 6, 282, 285, 297, 300, 348
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	1 cut(s)	343
Tth111I	GACNNNGTC	1 cut(s)	221
XceI	RCATGY	1 cut(s)	277
Zsp2I	ATGCAT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.