Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003450

Physical Location & Seq

Genomic Coordinates Reverse (-)

35104791 .. 35106690

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG229600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGCAACGTCAAAGACGGAGACTTTGCTTTCAGCTGGAAATCAAGCAACCACTCTCATCAAGGTAAGAAAGTACTCACCTTTACCCTATTTGCATCGGCAGCAGCTAGGTCTGGTATTCCAGAAATCAAGGGGAGTTTAAATGGGGTTGGCATACATGGTGTCCTACTTATCAGAACATTGATTGGAAAGATTTTTGTGAGCCTTGGTTCAGTGGGAGGTGGTCTAGCTTTACGCAAAGAAGGTCCTCTTCATAAGGTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

88

Amino Acids

9.14

Weight (kDa)

10.45

Isoelectric Point (pI)

14.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Voltage_CLC	PF00654	28 - 88	5.6e-06	Voltage gated chloride channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26240 AT5G26240
fragaria_vesca	FvH4_4g15130 FvH4_4g15130
malus_domestica	MD13G1188900.v1.1 MD16G1189700.v1.1
prunus_persica	Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1
pyrus_communis	pycom13g16330 pycom16g15940
rosa_chinensis	RchiOBHm_Chr3g0497631 RchiOBHm_Chr4g0416741
rosa_laevigata	RLG00000007956 RLG00000023042
rosa_multiflora	Rmu_co8329069.1_g000001 Rmu_sc0023201.1_g000001 Rmu_sc0025051.1_g000001 Rmu_sc0038555.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360610 Rroxscaffold_6G00395290
rosa_rugosa	Rorug04G0144200 Rorug04G0144200 Rorug04G0144200 Rorug04G0144200
rosa_samantha	Rh1BG229600 Rh1CG042200 Rh1DG027400 Rh4AG207000 Rh4BG204200 Rh7CG094800
rosa_wichuraiana	Rw4G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	75
AluBI	AGCT	3 cut(s)	36, 107, 230
AluI	AGCT	3 cut(s)	36, 107, 230
Alw26I	GTCTC	1 cut(s)	15
ApeKI	GCWGC	2 cut(s)	101, 104
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	113, 116
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	2 cut(s)	108, 227
BisI	GCNGC	2 cut(s)	102, 105
BlsI	GCNGC	2 cut(s)	103, 106
BmcAI	AGTACT	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmsI	GCATC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	113, 116
BsmAI	GTCTC	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	113, 116
BtsIMutI	CAGTG	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	4 cut(s)	36, 107, 204, 230
CviKI_1	RGCY	4 cut(s)	36, 107, 204, 230
CviQI	GTAC	1 cut(s)	74
DraI	TTTAAA	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	161
FaiI	YATR	3 cut(s)	155, 159, 255
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	102, 105
Fsp4HI	GCNGC	2 cut(s)	102, 105
FspBI	CTAG	2 cut(s)	108, 227
GluI	GCNGC	2 cut(s)	102, 105
Hin1II	CATG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	161
LpnPI	CCDG	3 cut(s)	22, 99, 135
Lsp1109I	GCAGC	2 cut(s)	113, 116
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	2 cut(s)	108, 227
MaeII	ACGT	1 cut(s)	9
MboII	GAAGA	1 cut(s)	242
MnlI	CCTC	2 cut(s)	212, 258
MseI	TTAA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	103, 106
PpuMI	RGGWCCY	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	245
PspPPI	RGGWCCY	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	36
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	2 cut(s)	102, 105
Sau96I	GGNCC	1 cut(s)	245
ScaI	AGTACT	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	104
SinI	GGWCC	1 cut(s)	245
SspMI	CTAG	2 cut(s)	108, 227
StyI	CCWWGG	1 cut(s)	205
TaiI	ACGT	1 cut(s)	12
TatI	WGTACW	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	2 cut(s)	101, 104
TspDTI	ATGAA	1 cut(s)	242
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	245
XspI	CTAG	2 cut(s)	108, 227
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.