Chloride channel protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G26240 AT5G26240 |
| fragaria_vesca | FvH4_4g15130 FvH4_4g15130 |
| malus_domestica | MD13G1188900.v1.1 MD16G1189700.v1.1 |
| prunus_persica | Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 |
| pyrus_communis | pycom13g16330 pycom16g15940 |
| rosa_chinensis | RchiOBHm_Chr3g0497631 RchiOBHm_Chr4g0416741 |
| rosa_laevigata | RLG00000007956 RLG00000023042 |
| rosa_multiflora | Rmu_co8329069.1_g000001 Rmu_sc0023201.1_g000001 Rmu_sc0025051.1_g000001 Rmu_sc0038555.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00360610 Rroxscaffold_6G00395290 |
| rosa_rugosa | Rorug04G0144200 Rorug04G0144200 Rorug04G0144200 Rorug04G0144200 |
| rosa_samantha | Rh1BG229600 Rh1CG042200 Rh1DG027400 Rh4AG207000 Rh4BG204200 Rh7CG094800 |
| rosa_wichuraiana | Rw4G017510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2178 |
| Acc36I | ACCTGC | 1 cut(s) | 2032 |
| AccB1I | GGYRCC | 1 cut(s) | 34 |
| AccI | GTMKAC | 2 cut(s) | 366, 1129 |
| AccII | CGCG | 1 cut(s) | 1696 |
| AciI | CCGC | 7 cut(s) | 55, 62, 78, 269, 429, 968, 1558 |
| AcsI | RAATTY | 3 cut(s) | 1225, 1303, 2012 |
| AcuI | CTGAAG | 1 cut(s) | 1182 |
| AcyI | GRCGYC | 4 cut(s) | 35, 90, 1039, 1456 |
| AfaI | GTAC | 7 cut(s) | 495, 850, 1399, 1682, 1736, 1926, 2087 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 67, 749 |
| AhlI | ACTAGT | 1 cut(s) | 2294 |
| AjnI | CCWGG | 6 cut(s) | 42, 47, 1201, 1426, 1985, 2234 |
| Alw21I | GWGCWC | 2 cut(s) | 742, 2286 |
| Alw26I | GTCTC | 2 cut(s) | 104, 1575 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 437 |
| AoxI | GGCC | 5 cut(s) | 45, 574, 1196, 1675, 1764 |
| ApaI | GGGCCC | 1 cut(s) | 578 |
| ApeKI | GCWGC | 6 cut(s) | 266, 431, 434, 713, 728, 1532 |
| ApoI | RAATTY | 3 cut(s) | 1225, 1303, 2012 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 929, 961, 1890, 1922 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 227 |
| AspLEI | GCGC | 3 cut(s) | 37, 184, 1696 |
| AspS9I | GGNCC | 3 cut(s) | 51, 574, 575 |
| AsuHPI | GGTGA | 4 cut(s) | 232, 1375, 1670, 1792 |
| AvaII | GGWCC | 1 cut(s) | 51 |
| AxyI | CCTNAGG | 1 cut(s) | 2133 |
| BaeGI | GKGCMC | 2 cut(s) | 578, 1342 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1389, 1422, 1718, 1751 |
| BamHI | GGATCC | 2 cut(s) | 1982, 2266 |
| BanI | GGYRCC | 1 cut(s) | 34 |
| BanII | GRGCYC | 4 cut(s) | 87, 578, 742, 2286 |
| BauI | CACGAG | 2 cut(s) | 1794, 2214 |
| Bbv12I | GWGCWC | 2 cut(s) | 742, 2286 |
| BbvI | GCAGC | 6 cut(s) | 253, 443, 446, 715, 725, 1544 |
| BccI | CCATC | 8 cut(s) | 211, 648, 855, 920, 958, 2012, 2122, 2218 |
| BceAI | ACGGC | 2 cut(s) | 77, 1388 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 32, 281, 315 |
| BciT130I | CCWGG | 6 cut(s) | 44, 49, 1203, 1428, 1987, 2236 |
| BclI | TGATCA | 1 cut(s) | 1864 |
| BcoDI | GTCTC | 2 cut(s) | 104, 1575 |
| BcuI | ACTAGT | 1 cut(s) | 2294 |
| BfaI | CTAG | 5 cut(s) | 557, 651, 1172, 2177, 2295 |
| BfmI | CTRYAG | 2 cut(s) | 659, 1931 |
| BfoI | RGCGCY | 1 cut(s) | 38 |
| BfuAI | ACCTGC | 1 cut(s) | 2032 |
| BglII | AGATCT | 3 cut(s) | 522, 1168, 2092 |
| BisI | GCNGC | 7 cut(s) | 78, 267, 432, 435, 714, 729, 1533 |
| BlsI | GCNGC | 7 cut(s) | 79, 268, 433, 436, 715, 730, 1534 |
| Bme1390I | CCNGG | 6 cut(s) | 44, 49, 1203, 1428, 1987, 2236 |
| Bme18I | GGWCC | 1 cut(s) | 51 |
| BmgT120I | GGNCC | 3 cut(s) | 51, 574, 575 |
| BmiI | GGNNCC | 7 cut(s) | 36, 53, 541, 576, 1000, 1984, 2268 |
| BmrFI | CCNGG | 6 cut(s) | 44, 49, 1203, 1428, 1987, 2236 |
| BmrI | ACTGGG | 3 cut(s) | 178, 1004, 1535 |
| BmsI | GCATC | 2 cut(s) | 1282, 1651 |
| BmuI | ACTGGG | 3 cut(s) | 178, 1004, 1535 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 180, 212, 926, 958 |
| BpmI | CTGGAG | 2 cut(s) | 738, 1185 |
| Bpu10I | CCTNAGC | 1 cut(s) | 895 |
| BpuEI | CTTGAG | 1 cut(s) | 2273 |
| BsaBI | GATNNNNATC | 2 cut(s) | 681, 2058 |
| BsaHI | GRCGYC | 4 cut(s) | 35, 90, 1039, 1456 |
| BsaI | GGTCTC | 1 cut(s) | 104 |
| BsaJI | CCNNGG | 3 cut(s) | 543, 1193, 1427 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 67, 749 |
| Bse1I | ACTGG | 9 cut(s) | 173, 262, 595, 771, 999, 1040, 1530, 1722, 2031 |
| Bse21I | CCTNAGG | 1 cut(s) | 2133 |
| Bse3DI | GCAATG | 1 cut(s) | 861 |
| Bse8I | GATNNNNATC | 2 cut(s) | 681, 2058 |
| BseBI | CCWGG | 6 cut(s) | 44, 49, 1203, 1428, 1987, 2236 |
| BseDI | CCNNGG | 3 cut(s) | 543, 1193, 1427 |
| BseGI | GGATG | 3 cut(s) | 866, 1294, 1566 |
| BseJI | GATNNNNATC | 2 cut(s) | 681, 2058 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 67, 749 |
| BseMI | GCAATG | 1 cut(s) | 861 |
| BseMII | CTCAG | 6 cut(s) | 909, 1298, 2077, 2124, 2174, 2349 |
| BseNI | ACTGG | 9 cut(s) | 173, 262, 595, 771, 999, 1040, 1530, 1722, 2031 |
| BseRI | GAGGAG | 3 cut(s) | 188, 965, 2270 |
| BseSI | GKGCMC | 2 cut(s) | 578, 1342 |
| BseXI | GCAGC | 6 cut(s) | 253, 443, 446, 715, 725, 1544 |
| BseYI | CCCAGC | 1 cut(s) | 437 |
| BsgI | GTGCAG | 1 cut(s) | 732 |
| Bsh1236I | CGCG | 1 cut(s) | 1696 |
| Bsh1285I | CGRYCG | 1 cut(s) | 679 |
| BshFI | GGCC | 5 cut(s) | 47, 576, 1198, 1677, 1766 |
| BshNI | GGYRCC | 1 cut(s) | 34 |
| BsiEI | CGRYCG | 1 cut(s) | 679 |
| BsiHKAI | GWGCWC | 2 cut(s) | 742, 2286 |
| BslFI | GGGAC | 3 cut(s) | 37, 929, 2114 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 67, 749 |
| BsmAI | GTCTC | 2 cut(s) | 104, 1575 |
| BsmFI | GGGAC | 3 cut(s) | 37, 929, 2114 |
| BsmI | GAATGC | 2 cut(s) | 1193, 1707 |
| BsnI | GGCC | 5 cut(s) | 47, 576, 1198, 1677, 1766 |
| Bso31I | GGTCTC | 1 cut(s) | 104 |
| Bsp120I | GGGCCC | 1 cut(s) | 574 |
| Bsp1286I | GDGCHC | 5 cut(s) | 87, 578, 742, 1342, 2286 |
| Bsp1407I | TGTACA | 1 cut(s) | 2085 |
| BspACI | CCGC | 7 cut(s) | 55, 62, 78, 269, 429, 968, 1558 |
| BspANI | GGCC | 5 cut(s) | 47, 576, 1198, 1677, 1766 |
| BspCNI | CTCAG | 6 cut(s) | 908, 1297, 2076, 2125, 2175, 2348 |
| BspFNI | CGCG | 1 cut(s) | 1696 |
| BspHI | TCATGA | 3 cut(s) | 102, 1327, 1434 |
| BspLI | GGNNCC | 7 cut(s) | 36, 53, 541, 576, 1000, 1984, 2268 |
| BspMAI | CTGCAG | 1 cut(s) | 1935 |
| BspMI | ACCTGC | 1 cut(s) | 2032 |
| BspQI | GCTCTTC | 1 cut(s) | 104 |
| BspT107I | GGYRCC | 1 cut(s) | 34 |
| BspTNI | GGTCTC | 1 cut(s) | 104 |
| BsrDI | GCAATG | 1 cut(s) | 861 |
| BsrGI | TGTACA | 1 cut(s) | 2085 |
| BsrI | ACTGG | 9 cut(s) | 173, 262, 595, 771, 999, 1040, 1530, 1722, 2031 |
| BssECI | CCNNGG | 3 cut(s) | 543, 1193, 1427 |
| BssNAI | GTATAC | 1 cut(s) | 367 |
| BssNI | GRCGYC | 4 cut(s) | 35, 90, 1039, 1456 |
| BssSI | CACGAG | 2 cut(s) | 1794, 2214 |
| BssT1I | CCWWGG | 1 cut(s) | 1193 |
| Bst1107I | GTATAC | 1 cut(s) | 367 |
| Bst2BI | CACGAG | 2 cut(s) | 1794, 2214 |
| Bst2UI | CCWGG | 6 cut(s) | 44, 49, 1203, 1428, 1987, 2236 |
| Bst4CI | ACNGT | 3 cut(s) | 491, 1567, 2315 |
| Bst6I | CTCTTC | 3 cut(s) | 104, 785, 1500 |
| BstACI | GRCGYC | 4 cut(s) | 35, 90, 1039, 1456 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1155 |
| BstAUI | TGTACA | 1 cut(s) | 2085 |
| BstC8I | GCNNGC | 3 cut(s) | 180, 304, 1090 |
| BstDEI | CTNAG | 8 cut(s) | 382, 644, 895, 1284, 2063, 2133, 2183, 2335 |
| BstDSI | CCRYGG | 1 cut(s) | 543 |
| BstEII | GGTNACC | 1 cut(s) | 697 |
| BstF5I | GGATG | 3 cut(s) | 866, 1294, 1566 |
| BstFNI | CGCG | 1 cut(s) | 1696 |
| BstH2I | RGCGCY | 1 cut(s) | 38 |
| BstHHI | GCGC | 3 cut(s) | 37, 184, 1696 |
| BstMAI | GTCTC | 2 cut(s) | 104, 1575 |
| BstMCI | CGRYCG | 1 cut(s) | 679 |
| BstNI | CCWGG | 6 cut(s) | 44, 49, 1203, 1428, 1987, 2236 |
| BstPI | GGTNACC | 1 cut(s) | 697 |
| BstSCI | CCNGG | 6 cut(s) | 42, 47, 1201, 1426, 1985, 2234 |
| BstSFI | CTRYAG | 2 cut(s) | 659, 1931 |
| BstSLI | GKGCMC | 2 cut(s) | 578, 1342 |
| BstUI | CGCG | 1 cut(s) | 1696 |
| BstV1I | GCAGC | 6 cut(s) | 253, 443, 446, 715, 725, 1544 |
| BstX2I | RGATCY | 8 cut(s) | 522, 626, 691, 1168, 1442, 1982, 2092, 2266 |
| BstYI | RGATCY | 8 cut(s) | 522, 626, 691, 1168, 1442, 1982, 2092, 2266 |
| BstZ17I | GTATAC | 1 cut(s) | 367 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2133 |
| BsuRI | GGCC | 5 cut(s) | 47, 576, 1198, 1677, 1766 |
| BtgI | CCRYGG | 1 cut(s) | 543 |
| BtsCI | GGATG | 3 cut(s) | 866, 1294, 1566 |
| BtsIMutI | CAGTG | 4 cut(s) | 255, 764, 1572, 2014 |
| BveI | ACCTGC | 1 cut(s) | 2032 |
| Cac8I | GCNNGC | 3 cut(s) | 180, 304, 1090 |
| CaiI | CAGNNNCTG | 1 cut(s) | 437 |
| CciI | TCATGA | 3 cut(s) | 102, 1327, 1434 |
| CfoI | GCGC | 3 cut(s) | 37, 184, 1696 |
| Cfr13I | GGNCC | 3 cut(s) | 51, 574, 575 |
| CseI | GACGC | 4 cut(s) | 98, 1028, 1445, 1567 |
| Csp6I | GTAC | 7 cut(s) | 494, 849, 1398, 1681, 1735, 1925, 2086 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 785, 820 |
| CviAII | CATG | 8 cut(s) | 103, 212, 1155, 1328, 1435, 1627, 1868, 2077 |
| CviQI | GTAC | 7 cut(s) | 494, 849, 1398, 1681, 1735, 1925, 2086 |
| DdeI | CTNAG | 8 cut(s) | 382, 644, 895, 1284, 2063, 2133, 2183, 2335 |
| DinI | GGCGCC | 1 cut(s) | 36 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2178 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2178 |
| Eam1104I | CTCTTC | 3 cut(s) | 104, 785, 1500 |
| EarI | CTCTTC | 3 cut(s) | 104, 785, 1500 |
| Ecl136II | GAGCTC | 2 cut(s) | 740, 2284 |
| Eco130I | CCWWGG | 1 cut(s) | 1193 |
| Eco147I | AGGCCT | 3 cut(s) | 1198, 1677, 1766 |
| Eco24I | GRGCYC | 4 cut(s) | 87, 578, 742, 2286 |
| Eco31I | GGTCTC | 1 cut(s) | 104 |
| Eco47I | GGWCC | 1 cut(s) | 51 |
| Eco53kI | GAGCTC | 2 cut(s) | 740, 2284 |
| Eco57I | CTGAAG | 1 cut(s) | 1182 |
| Eco81I | CCTNAGG | 1 cut(s) | 2133 |
| Eco91I | GGTNACC | 1 cut(s) | 697 |
| EcoICRI | GAGCTC | 2 cut(s) | 740, 2284 |
| EcoO109I | RGGNCCY | 2 cut(s) | 574, 575 |
| EcoO65I | GGTNACC | 1 cut(s) | 697 |
| EcoRII | CCWGG | 6 cut(s) | 42, 47, 1201, 1426, 1985, 2234 |
| EcoT14I | CCWWGG | 1 cut(s) | 1193 |
| EcoT38I | GRGCYC | 4 cut(s) | 87, 578, 742, 2286 |
| EgeI | GGCGCC | 1 cut(s) | 36 |
| EheI | GGCGCC | 1 cut(s) | 36 |
| ErhI | CCWWGG | 1 cut(s) | 1193 |
| FaeI | CATG | 8 cut(s) | 106, 215, 1158, 1331, 1438, 1630, 1871, 2080 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 215, 247 |
| FaqI | GGGAC | 3 cut(s) | 37, 929, 2114 |
| FatI | CATG | 8 cut(s) | 102, 211, 1154, 1327, 1434, 1626, 1867, 2076 |
| FauI | CCCGC | 3 cut(s) | 62, 69, 436 |
| FauNDI | CATATG | 3 cut(s) | 346, 1450, 1516 |
| FbaI | TGATCA | 1 cut(s) | 1864 |
| FblI | GTMKAC | 2 cut(s) | 366, 1129 |
| Fnu4HI | GCNGC | 7 cut(s) | 78, 267, 432, 435, 714, 729, 1533 |
| FokI | GGATG | 3 cut(s) | 873, 1301, 1573 |
| FriOI | GRGCYC | 4 cut(s) | 87, 578, 742, 2286 |
| Fsp4HI | GCNGC | 7 cut(s) | 78, 267, 432, 435, 714, 729, 1533 |
| FspBI | CTAG | 5 cut(s) | 557, 651, 1172, 2177, 2295 |
| GlaI | GCGC | 3 cut(s) | 36, 183, 1695 |
| GluI | GCNGC | 7 cut(s) | 78, 267, 432, 435, 714, 729, 1533 |
| GsaI | CCCAGC | 1 cut(s) | 441 |
| GsuI | CTGGAG | 2 cut(s) | 738, 1185 |
| HaeII | RGCGCY | 1 cut(s) | 38 |
| HaeIII | GGCC | 5 cut(s) | 47, 576, 1198, 1677, 1766 |
| HgaI | GACGC | 4 cut(s) | 98, 1028, 1445, 1567 |
| HhaI | GCGC | 3 cut(s) | 37, 184, 1696 |
| Hin1I | GRCGYC | 4 cut(s) | 35, 90, 1039, 1456 |
| Hin1II | CATG | 8 cut(s) | 106, 215, 1158, 1331, 1438, 1630, 1871, 2080 |
| Hin6I | GCGC | 3 cut(s) | 35, 182, 1694 |
| HinP1I | GCGC | 3 cut(s) | 35, 182, 1694 |
| HincII | GTYRAC | 2 cut(s) | 797, 1353 |
| HindII | GTYRAC | 2 cut(s) | 797, 1353 |
| HinfI | GANTC | 6 cut(s) | 10, 793, 1066, 1071, 1175, 1721 |
| HphI | GGTGA | 4 cut(s) | 232, 1375, 1670, 1792 |
| Hpy166II | GTNNAC | 6 cut(s) | 367, 494, 797, 884, 1130, 1353 |
| Hpy188I | TCNGA | 6 cut(s) | 70, 506, 925, 2071, 2171, 2184 |
| Hpy8I | GTNNAC | 6 cut(s) | 367, 494, 797, 884, 1130, 1353 |
| Hpy99I | CGWCG | 4 cut(s) | 92, 98, 119, 1044 |
| HpyAV | CCTTC | 5 cut(s) | 1366, 1667, 1798, 1933, 2233 |
| HpyCH4III | ACNGT | 3 cut(s) | 491, 1567, 2315 |
| HpyCH4IV | ACGT | 2 cut(s) | 1019, 1208 |
| HpyF3I | CTNAG | 8 cut(s) | 382, 644, 895, 1284, 2063, 2133, 2183, 2335 |
| HpySE526I | ACGT | 2 cut(s) | 1019, 1208 |
| Hsp92I | GRCGYC | 4 cut(s) | 35, 90, 1039, 1456 |
| Hsp92II | CATG | 8 cut(s) | 106, 215, 1158, 1331, 1438, 1630, 1871, 2080 |
| HspAI | GCGC | 3 cut(s) | 35, 182, 1694 |
| KasI | GGCGCC | 1 cut(s) | 34 |
| Ksp22I | TGATCA | 1 cut(s) | 1864 |
| LguI | GCTCTTC | 1 cut(s) | 104 |
| LmnI | GCTCC | 8 cut(s) | 175, 531, 545, 745, 998, 1529, 2281, 2289 |
| Lsp1109I | GCAGC | 6 cut(s) | 253, 443, 446, 715, 725, 1544 |
| LweI | GCATC | 2 cut(s) | 1282, 1651 |
| MaeI | CTAG | 5 cut(s) | 557, 651, 1172, 2177, 2295 |
| MaeII | ACGT | 2 cut(s) | 1019, 1208 |
| MaeIII | GTNAC | 5 cut(s) | 412, 697, 775, 1387, 1913 |
| MboII | GAAGA | 9 cut(s) | 118, 121, 782, 802, 1267, 1517, 1628, 1697, 1759 |
| MflI | RGATCY | 8 cut(s) | 522, 626, 691, 1168, 1442, 1982, 2092, 2266 |
| MhlI | GDGCHC | 5 cut(s) | 87, 578, 742, 1342, 2286 |
| Mly113I | GGCGCC | 1 cut(s) | 35 |
| MlyI | GAGTC | 2 cut(s) | 802, 1080 |
| MmeI | TCCRAC | 2 cut(s) | 1975, 2194 |
| MroXI | GAANNNNTTC | 1 cut(s) | 227 |
| MseI | TTAA | 5 cut(s) | 669, 1008, 1139, 1700, 1803 |
| MslI | CAYNNNNRTG | 4 cut(s) | 591, 784, 1059, 2081 |
| MspA1I | CMGCKG | 3 cut(s) | 437, 716, 1412 |
| MspR9I | CCNGG | 6 cut(s) | 44, 49, 1203, 1428, 1987, 2236 |
| Mva1269I | GAATGC | 2 cut(s) | 1193, 1707 |
| MvaI | CCWGG | 6 cut(s) | 44, 49, 1203, 1428, 1987, 2236 |
| MvnI | CGCG | 1 cut(s) | 1696 |
| NarI | GGCGCC | 1 cut(s) | 35 |
| NdeI | CATATG | 3 cut(s) | 346, 1450, 1516 |
| NlaIII | CATG | 8 cut(s) | 106, 215, 1158, 1331, 1438, 1630, 1871, 2080 |
| NlaIV | GGNNCC | 7 cut(s) | 36, 53, 541, 576, 1000, 1984, 2268 |
| NmeAIII | GCCGAG | 1 cut(s) | 106 |
| NmuCI | GTSAC | 2 cut(s) | 1387, 1913 |
| PagI | TCATGA | 3 cut(s) | 102, 1327, 1434 |
| PceI | AGGCCT | 3 cut(s) | 1198, 1677, 1766 |
| PciSI | GCTCTTC | 1 cut(s) | 104 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 123 |
| PctI | GAATGC | 2 cut(s) | 1193, 1707 |
| PdmI | GAANNNNTTC | 1 cut(s) | 227 |
| PfeI | GAWTC | 4 cut(s) | 10, 1066, 1175, 1721 |
| PflFI | GACNNNGTC | 3 cut(s) | 92, 119, 1567 |
| PfoI | TCCNGGA | 1 cut(s) | 1201 |
| PkrI | GCNGC | 7 cut(s) | 79, 268, 433, 436, 715, 730, 1534 |
| Ple19I | CGATCG | 1 cut(s) | 679 |
| PleI | GAGTC | 2 cut(s) | 801, 1079 |
| PluTI | GGCGCC | 1 cut(s) | 38 |
| PpsI | GAGTC | 2 cut(s) | 801, 1079 |
| Psp124BI | GAGCTC | 2 cut(s) | 742, 2286 |
| Psp6I | CCWGG | 6 cut(s) | 42, 47, 1201, 1426, 1985, 2234 |
| PspEI | GGTNACC | 1 cut(s) | 697 |
| PspFI | CCCAGC | 1 cut(s) | 437 |
| PspGI | CCWGG | 6 cut(s) | 42, 47, 1201, 1426, 1985, 2234 |
| PspN4I | GGNNCC | 7 cut(s) | 36, 53, 541, 576, 1000, 1984, 2268 |
| PspOMI | GGGCCC | 1 cut(s) | 574 |
| PspPI | GGNCC | 3 cut(s) | 51, 574, 575 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1235, 1267 |
| PstI | CTGCAG | 1 cut(s) | 1935 |
| PstNI | CAGNNNCTG | 1 cut(s) | 437 |
| PsuI | RGATCY | 8 cut(s) | 522, 626, 691, 1168, 1442, 1982, 2092, 2266 |
| PsyI | GACNNNGTC | 3 cut(s) | 92, 119, 1567 |
| PvuI | CGATCG | 1 cut(s) | 679 |
| PvuII | CAGCTG | 3 cut(s) | 437, 716, 1412 |
| RsaI | GTAC | 7 cut(s) | 495, 850, 1399, 1682, 1736, 1926, 2087 |
| RsaNI | GTAC | 7 cut(s) | 494, 849, 1398, 1681, 1735, 1925, 2086 |
| RseI | CAYNNNNRTG | 4 cut(s) | 591, 784, 1059, 2081 |
| SacI | GAGCTC | 2 cut(s) | 742, 2286 |
| SapI | GCTCTTC | 1 cut(s) | 104 |
| SaqAI | TTAA | 5 cut(s) | 669, 1008, 1139, 1700, 1803 |
| SatI | GCNGC | 7 cut(s) | 78, 267, 432, 435, 714, 729, 1533 |
| Sau96I | GGNCC | 3 cut(s) | 51, 574, 575 |
| SchI | GAGTC | 2 cut(s) | 802, 1080 |
| ScrFI | CCNGG | 6 cut(s) | 44, 49, 1203, 1428, 1987, 2236 |
| SduI | GDGCHC | 5 cut(s) | 87, 578, 742, 1342, 2286 |
| SfaNI | GCATC | 2 cut(s) | 1282, 1651 |
| SfcI | CTRYAG | 2 cut(s) | 659, 1931 |
| SfoI | GGCGCC | 1 cut(s) | 36 |
| SinI | GGWCC | 1 cut(s) | 51 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 591, 784, 1059, 2081 |
| SmlI | CTYRAG | 1 cut(s) | 2252 |
| SmoI | CTYRAG | 1 cut(s) | 2252 |
| SpeI | ACTAGT | 1 cut(s) | 2294 |
| SseBI | AGGCCT | 3 cut(s) | 1198, 1677, 1766 |
| SsiI | CCGC | 7 cut(s) | 55, 62, 78, 269, 429, 968, 1558 |
| SspDI | GGCGCC | 1 cut(s) | 34 |
| SspI | AATATT | 1 cut(s) | 283 |
| SspMI | CTAG | 5 cut(s) | 557, 651, 1172, 2177, 2295 |
| SstI | GAGCTC | 2 cut(s) | 742, 2286 |
| StuI | AGGCCT | 3 cut(s) | 1198, 1677, 1766 |
| StyD4I | CCNGG | 6 cut(s) | 42, 47, 1201, 1426, 1985, 2234 |
| StyI | CCWWGG | 1 cut(s) | 1193 |
| TaaI | ACNGT | 3 cut(s) | 491, 1567, 2315 |
| TaiI | ACGT | 2 cut(s) | 1022, 1211 |
| TaqI | TCGA | 9 cut(s) | 8, 30, 291, 736, 1042, 1069, 1937, 2291, 2342 |
| TaqII | GACCGA | 1 cut(s) | 86 |
| TatI | WGTACW | 2 cut(s) | 493, 2085 |
| TauI | GCSGC | 1 cut(s) | 80 |
| TfiI | GAWTC | 4 cut(s) | 10, 1066, 1175, 1721 |
| Tru1I | TTAA | 5 cut(s) | 669, 1008, 1139, 1700, 1803 |
| Tru9I | TTAA | 5 cut(s) | 669, 1008, 1139, 1700, 1803 |
| TscAI | CASTG | 4 cut(s) | 262, 771, 1572, 2014 |
| TseFI | GTSAC | 2 cut(s) | 1387, 1913 |
| TseI | GCWGC | 6 cut(s) | 266, 431, 434, 713, 728, 1532 |
| Tsp45I | GTSAC | 2 cut(s) | 1387, 1913 |
| TspDTI | ATGAA | 9 cut(s) | 119, 265, 364, 575, 895, 1316, 1365, 1686, 2063 |
| TspGWI | ACGGA | 1 cut(s) | 532 |
| TspRI | CASTG | 4 cut(s) | 262, 771, 1572, 2014 |
| Tth111I | GACNNNGTC | 3 cut(s) | 92, 119, 1567 |
| VpaK11BI | GGWCC | 1 cut(s) | 51 |
| XapI | RAATTY | 3 cut(s) | 1225, 1303, 2012 |
| XbaI | TCTAGA | 1 cut(s) | 1171 |
| XmiI | GTMKAC | 2 cut(s) | 366, 1129 |
| XmnI | GAANNNNTTC | 1 cut(s) | 227 |
| XspI | CTAG | 5 cut(s) | 557, 651, 1172, 2177, 2295 |