Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003450

Physical Location & Seq

Genomic Coordinates Forward (+)

17124905 .. 17125657

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023042

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGATTTGCATGTTCTTCTCTGGCTGGGCAACAGCAGTTCCGCAGGTTCGTTTCGTTGTTATGGGCAACATCAAAGACGGAGACTTTGCTTTCAGCTGGAAAGCAACTACTCTCATCAAGTTTAATGATTCCTCGATTAACTCTACCTTTACACTATTTGCATCGGCAGCAGCTGAGTCTGGTATTCCAGAAATCAAGGGGAGTTTAAATGGGGTTGGCATACATCGTGTCCTACTTTTCAGAACATTGATTGGAAAGATTTTTGTGAGCCTTGGTTCAGTGGGAGGTGGTTTAGCTTTACGCAAAGAAGGTCCTCTTGATAAGGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

111

Amino Acids

11.8

Weight (kDa)

9.89

Isoelectric Point (pI)

21.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26240 AT5G26240
fragaria_vesca	FvH4_4g15130 FvH4_4g15130
malus_domestica	MD13G1188900.v1.1 MD16G1189700.v1.1
prunus_persica	Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1 Prupe.1G156000_v2.0.a1
pyrus_communis	pycom13g16330 pycom16g15940
rosa_chinensis	RchiOBHm_Chr3g0497631 RchiOBHm_Chr4g0416741
rosa_laevigata	RLG00000007956 RLG00000023042
rosa_multiflora	Rmu_co8329069.1_g000001 Rmu_sc0023201.1_g000001 Rmu_sc0025051.1_g000001 Rmu_sc0038555.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360610 Rroxscaffold_6G00395290
rosa_rugosa	Rorug04G0144200 Rorug04G0144200 Rorug04G0144200 Rorug04G0144200
rosa_samantha	Rh1BG229600 Rh1CG042200 Rh1DG027400 Rh4AG207000 Rh4BG204200 Rh7CG094800
rosa_wichuraiana	Rw4G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	34
AciI	CCGC	1 cut(s)	41
AluBI	AGCT	3 cut(s)	96, 173, 296
AluI	AGCT	3 cut(s)	96, 173, 296
Alw26I	GTCTC	1 cut(s)	75
AlwNI	CAGNNNCTG	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	167, 170
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AspS9I	GGNCC	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	311
BbvI	GCAGC	2 cut(s)	179, 182
BcoDI	GTCTC	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	2 cut(s)	168, 171
BlsI	GCNGC	2 cut(s)	169, 172
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmsI	GCATC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	179, 182
BseYI	CCCAGC	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	13
BstV1I	GCAGC	2 cut(s)	179, 182
BtsIMutI	CAGTG	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	311
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	5 cut(s)	24, 96, 173, 270, 296
CviKI_1	RGCY	5 cut(s)	24, 96, 173, 270, 296
DdeI	CTNAG	1 cut(s)	174
DraI	TTTAAA	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	13
FaiI	YATR	3 cut(s)	11, 62, 221
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	168, 171
Fsp4HI	GCNGC	2 cut(s)	168, 171
GluI	GCNGC	2 cut(s)	168, 171
GsaI	CCCAGC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	13
HinfI	GANTC	2 cut(s)	128, 176
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	2 cut(s)	188, 317
HpyAV	CCTTC	1 cut(s)	302
HpyCH4V	TGCA	2 cut(s)	9, 161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	6, 10, 29, 82, 165, 201
Lsp1109I	GCAGC	2 cut(s)	179, 182
LweI	GCATC	1 cut(s)	170
MboII	GAAGA	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	3 cut(s)	142, 278, 324
MseI	TTAA	3 cut(s)	123, 138, 206
MspA1I	CMGCKG	2 cut(s)	96, 173
MwoI	GCNNNNNNNGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	13
NspI	RCATGY	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	169, 172
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	311
Psp5II	RGGWCCY	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	311
PspPPI	RGGWCCY	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	173
PvuII	CAGCTG	2 cut(s)	96, 173
SaqAI	TTAA	3 cut(s)	123, 138, 206
SatI	GCNGC	2 cut(s)	168, 171
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	185
SetI	ASST	8 cut(s)	48, 98, 149, 175, 289, 298, 313, 327
SfaNI	GCATC	1 cut(s)	170
SinI	GGWCC	1 cut(s)	311
SsiI	CCGC	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	271
TaqI	TCGA	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	3 cut(s)	123, 138, 206
Tru9I	TTAA	3 cut(s)	123, 138, 206
TscAI	CASTG	1 cut(s)	285
TseI	GCWGC	2 cut(s)	167, 170
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	311
XceI	RCATGY	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.