FvH4_4g15140

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015252
Physical Location & Seq
Reverse (-)
18710295 .. 18711720
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15140.t1

Sequence Viewer

Length: 534 bp
ATGGCTTTCATGATCAGAGCCTTGGCTGTGGTGGTGGCGATGATGGCTGTGGTGCTGCAAGTTTCGAATGCAACTGAATACAAGGTTGGAGACTCGGCTGGATGGACCACCATCGGAAATGTCAACTACAAAGAATGGGCTGCTACCAAGACCTTCCGAGTTGGAGACGTTATCAAATTCACATACAATGCTCAGTTTCACAATGTACTTCGAGTTACACATGCCATGTACAGGTCCTGTAATGTTTCAGTCCCTTTGGAGTCCTTCAGCACCGGAAACGATTCCATCACAATGAAGACCAAAGGCCACCATTTCTTTGTTTGCGGTGTTCCCGGTCACTGCCAATCCGGTCAGAAGGTCGACATCAATGTACGCAATGTACCAATTGCTGCAACTCCTTCTGCATTGCCCTCCCCTACTACAATTGCTGCTGCAAAGACTCCCGCACCGTCTCCAAATATGGCTGCTCCCCACAAAATTGCGTTGCTAGGATTAATAACAATTGCAACTCTAGCATTTTTTGCTTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

178

Amino Acids

18.85

Weight (kDa)

9.58

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 118 2.4e-30 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26330
fragaria_vesca FvH4_4g15140
malus_domestica MD13G1189000.v1.1 MD16G1189800.v1.1
prunus_persica Prupe.1G156200_v2.0.a1
pyrus_communis pycom13g16340
rosa_chinensis RchiOBHm_Chr4g0416731
rosa_laevigata RLG00000007957
rosa_multiflora Rmu_sc0005655.1_g000002
rosa_roxburghii Rroxscaffold_5G00360600
rosa_rugosa Rorug04G0144200
rosa_samantha Rh4AG206900 Rh4BG204100 Rh4CG217900 Rh4DG204000
rosa_wichuraiana Rw4G017500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 360
AciI CCGC 2 cut(s) 324, 444
AcsI RAATTY 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 250
AfaI GTAC 4 cut(s) 207, 230, 372, 381
AfiI CCNNNNNNNGG 1 cut(s) 231
AjuI GAANNNNNNNTTGG 2 cut(s) 69, 101
Alw26I GTCTC 3 cut(s) 84, 159, 456
AlwNI CAGNNNCTG 1 cut(s) 237
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 6 cut(s) 55, 140, 389, 428, 431, 464
ApoI RAATTY 1 cut(s) 176
AseI ATTAAT 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 105, 234
AsuC2I CCSGG 1 cut(s) 333
AsuII TTCGAA 1 cut(s) 65
AvaII GGWCC 2 cut(s) 105, 234
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 6 cut(s) 42, 127, 376, 415, 418, 451
BccI CCATC 4 cut(s) 37, 96, 119, 293
BclI TGATCA 1 cut(s) 12
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 3 cut(s) 84, 159, 456
BfaI CTAG 2 cut(s) 488, 512
BisI GCNGC 6 cut(s) 56, 141, 390, 429, 432, 465
BlsI GCNGC 6 cut(s) 57, 142, 391, 430, 433, 466
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 2 cut(s) 105, 234
BmgT120I GGNCC 2 cut(s) 105, 234
BmrFI CCNGG 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 302
Bpu14I TTCGAA 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 2 cut(s) 272, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse3DI GCAATG 2 cut(s) 382, 404
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMI GCAATG 2 cut(s) 382, 404
BseMII CTCAG 1 cut(s) 206
BseXI GCAGC 6 cut(s) 42, 127, 376, 415, 418, 451
BshFI GGCC 1 cut(s) 306
BsiSI CCGG 3 cut(s) 273, 333, 348
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 3 cut(s) 84, 159, 456
BsmBI CGTCTC 2 cut(s) 159, 456
BsmFI GGGAC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 65
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 2 cut(s) 324, 444
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 1 cut(s) 205
BspHI TCATGA 1 cut(s) 9
BspT104I TTCGAA 1 cut(s) 65
BsrDI GCAATG 2 cut(s) 382, 404
BsrGI TGTACA 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 450
BstAPI GCANNNNNTGC 1 cut(s) 521
BstAUI TGTACA 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 107
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 3 cut(s) 84, 159, 456
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 3 cut(s) 44, 512, 521
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 331
BstV1I GCAGC 6 cut(s) 42, 127, 376, 415, 418, 451
BstV2I GAAGAC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 306
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 337
CaiI CAGNNNCTG 1 cut(s) 237
CciI TCATGA 1 cut(s) 9
Cfr13I GGNCC 2 cut(s) 105, 234
Csp6I GTAC 4 cut(s) 206, 229, 371, 380
CviAII CATG 3 cut(s) 10, 221, 226
CviJI RGCY 8 cut(s) 5, 20, 26, 47, 98, 140, 306, 464
CviKI_1 RGCY 8 cut(s) 5, 20, 26, 47, 98, 140, 306, 464
CviQI GTAC 4 cut(s) 206, 229, 371, 380
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 2 cut(s) 105, 234
Eco57I CTGAAG 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 2 cut(s) 159, 456
FaeI CATG 3 cut(s) 13, 224, 229
FaiI YATR 5 cut(s) 11, 184, 222, 227, 461
FaqI GGGAC 1 cut(s) 236
FatI CATG 3 cut(s) 9, 220, 225
FauI CCCGC 1 cut(s) 451
FbaI TGATCA 1 cut(s) 12
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 6 cut(s) 56, 141, 390, 429, 432, 465
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 6 cut(s) 56, 141, 390, 429, 432, 465
FspBI CTAG 2 cut(s) 488, 512
GluI GCNGC 6 cut(s) 56, 141, 390, 429, 432, 465
HaeIII GGCC 1 cut(s) 306
HapII CCGG 3 cut(s) 273, 333, 348
Hin1II CATG 3 cut(s) 13, 224, 229
HincII GTYRAC 2 cut(s) 124, 361
HindII GTYRAC 2 cut(s) 124, 361
HinfI GANTC 4 cut(s) 92, 260, 281, 439
HpaII CCGG 3 cut(s) 273, 333, 348
Hpy166II GTNNAC 2 cut(s) 124, 361
Hpy188I TCNGA 4 cut(s) 17, 116, 158, 354
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 2 cut(s) 124, 361
HpyAV CCTTC 4 cut(s) 163, 274, 349, 408
HpyCH4III ACNGT 1 cut(s) 450
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 6 cut(s) 58, 71, 392, 404, 434, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 512, 521
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 3 cut(s) 13, 224, 229
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 472
LpnPI CCDG 7 cut(s) 84, 217, 250, 286, 346, 361, 513
Lsp1109I GCAGC 6 cut(s) 42, 127, 376, 415, 418, 451
MaeI CTAG 2 cut(s) 488, 512
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 214, 335
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 1 cut(s) 307
MfeI CAATTG 3 cut(s) 384, 423, 501
MluCI AATT 5 cut(s) 176, 384, 423, 477, 501
MlyI GAGTC 3 cut(s) 86, 269, 433
MmeI TCCRAC 2 cut(s) 67, 142
MnlI CCTC 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 280
MseI TTAA 2 cut(s) 494, 532
MslI CAYNNNNRTG 1 cut(s) 290
MspI CCGG 3 cut(s) 273, 333, 348
MspR9I CCNGG 1 cut(s) 333
MunI CAATTG 3 cut(s) 384, 423, 501
Mva1269I GAATGC 1 cut(s) 73
MwoI GCNNNNNNNGC 3 cut(s) 44, 512, 521
NciI CCSGG 1 cut(s) 333
NdeII GATC 1 cut(s) 12
NlaIII CATG 3 cut(s) 13, 224, 229
NmeAIII GCCGAG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 1 cut(s) 224
NspV TTCGAA 1 cut(s) 65
PagI TCATGA 1 cut(s) 9
PctI GAATGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 6 cut(s) 57, 142, 391, 430, 433, 466
PleI GAGTC 3 cut(s) 86, 268, 433
PpsI GAGTC 3 cut(s) 86, 268, 433
PpuMI RGGWCCY 1 cut(s) 234
PshBI ATTAAT 1 cut(s) 494
Psp5II RGGWCCY 1 cut(s) 234
PspPI GGNCC 2 cut(s) 105, 234
PspPPI RGGWCCY 1 cut(s) 234
PstNI CAGNNNCTG 1 cut(s) 237
RsaI GTAC 4 cut(s) 207, 230, 372, 381
RsaNI GTAC 4 cut(s) 206, 229, 371, 380
RseI CAYNNNNRTG 1 cut(s) 290
SalI GTCGAC 1 cut(s) 359
SaqAI TTAA 2 cut(s) 494, 532
SatI GCNGC 6 cut(s) 56, 141, 390, 429, 432, 465
Sau3AI GATC 1 cut(s) 12
Sau96I GGNCC 2 cut(s) 105, 234
SchI GAGTC 3 cut(s) 86, 269, 433
ScrFI CCNGG 1 cut(s) 333
SetI ASST 5 cut(s) 87, 155, 171, 236, 360
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 2 cut(s) 105, 234
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 5 cut(s) 176, 384, 423, 477, 501
SsiI CCGC 2 cut(s) 324, 444
SspMI CTAG 2 cut(s) 488, 512
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 450
TaiI ACGT 1 cut(s) 171
TaqI TCGA 3 cut(s) 65, 211, 360
TasI AATT 5 cut(s) 176, 384, 423, 477, 501
TatI WGTACW 2 cut(s) 205, 228
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 2 cut(s) 494, 532
Tru9I TTAA 2 cut(s) 494, 532
TscAI CASTG 1 cut(s) 344
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 6 cut(s) 55, 140, 389, 428, 431, 464
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 308
TspRI CASTG 1 cut(s) 344
VpaK11BI GGWCC 2 cut(s) 105, 234
VspI ATTAAT 1 cut(s) 494
XapI RAATTY 1 cut(s) 176
XceI RCATGY 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 280
XspI CTAG 2 cut(s) 488, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.