AT5G26640

cullin family protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015826
Physical Location & Seq
Reverse (-)
9347841 .. 9348174
334 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26640.1

Sequence Viewer

Length: 189 bp
ATGGCATGGGGTACATGGGATGCTCAAGATGAGACATGTGGGTTATGTCGGATGCCATTTGATGCTTCTTGTCCTGACTGCAAACTCCCTGAGGATGATTGCCCTCTAAGTAAACTCCTCGGGGATTATTGCCTAGCTATGGCCATTGCCCTATGTGTCGTAGAAGATGGAAATATAAAGAGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000152 GO:0000209 GO:0000278 GO:0000280 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005680 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007088 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009790 GO:0009792 GO:0009896 GO:0009987 GO:0010498 GO:0010564 GO:0010638 GO:0010965 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0022414 GO:0030071 GO:0030163 GO:0031145 GO:0031331 GO:0031461 GO:0031974 GO:0031981 GO:0032270 GO:0032436 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034450 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045132 GO:0045732 GO:0045787 GO:0045840 GO:0045842 GO:0045862 GO:0045931 GO:0046872 GO:0046914 GO:0048285 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051247 GO:0051321 GO:0051603 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0051983 GO:0051984 GO:0061630 GO:0061659 GO:0062033 GO:0065007 GO:0070013 GO:0070647 GO:0070979 GO:0071704 GO:0071840 GO:0090068 GO:0097602 GO:0098813 GO:0140013 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1901970 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902099 GO:1902101 GO:1902494 GO:1903046 GO:1903052 GO:1903364 GO:1905818 GO:1905820 GO:1990234 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
LURAP zf-ANAPC11

Protein Analysis

62

Amino Acids

6.74

Weight (kDa)

4.05

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-ANAPC11 PF12861 10 - 52 3.6e-11 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26640
fragaria_vesca FvH4_6g43400
malus_domestica MD05G1140700.v1.1
prunus_persica Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1
pyrus_communis pycom01g12800
rosa_chinensis RchiOBHm_Chr1g0321441
rosa_roxburghii Rroxscaffold_4G00327730
rosa_samantha Rh1BG042700 Rh1CG047400 Rh1DG052600 Rh1DG054500 Rh3DG092400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 141
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 35
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 141
AvaI CYCGRG 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 90
BalI TGGCCA 1 cut(s) 143
BccI CCATC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 2 cut(s) 134, 187
BmeT110I CYCGRG 1 cut(s) 119
BmsI GCATC 3 cut(s) 10, 42, 52
BpuEI CTTGAG 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse21I CCTNAGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 3 cut(s) 25, 57, 100
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 107
BshFI GGCC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 26
BsnI GGCC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 119
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 90, 107
BstF5I GGATG 3 cut(s) 25, 57, 100
BstMAI GTCTC 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 90
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 3 cut(s) 25, 57, 100
Csp6I GTAC 1 cut(s) 12
CviAII CATG 3 cut(s) 6, 15, 36
CviJI RGCY 2 cut(s) 137, 143
CviKI_1 RGCY 2 cut(s) 137, 143
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 90, 107
EaeI YGGCCR 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 119
FaeI CATG 3 cut(s) 9, 18, 39
FaiI YATR 7 cut(s) 7, 16, 37, 46, 140, 154, 176
FatI CATG 3 cut(s) 5, 14, 35
FokI GGATG 3 cut(s) 32, 64, 107
FspBI CTAG 2 cut(s) 134, 187
HaeIII GGCC 1 cut(s) 143
Hin1II CATG 3 cut(s) 9, 18, 39
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 26, 74
Hpy8I GTNNAC 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 81
HpyF3I CTNAG 2 cut(s) 90, 107
Hsp92II CATG 3 cut(s) 9, 18, 39
LpnPI CCDG 2 cut(s) 87, 102
LweI GCATC 3 cut(s) 10, 42, 52
MaeI CTAG 2 cut(s) 134, 187
MaeIII GTNAC 1 cut(s) 182
MboII GAAGA 1 cut(s) 176
MlsI TGGCCA 1 cut(s) 143
MluNI TGGCCA 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 3 cut(s) 85, 114, 128
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
NlaIII CATG 3 cut(s) 9, 18, 39
NspI RCATGY 1 cut(s) 39
PciI ACATGT 1 cut(s) 35
PscI ACATGT 1 cut(s) 35
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SetI ASST 1 cut(s) 139
SfaNI GCATC 3 cut(s) 10, 42, 52
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
SspMI CTAG 2 cut(s) 134, 187
XceI RCATGY 1 cut(s) 39
XspI CTAG 2 cut(s) 134, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.