Rh1DG054500

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0015826
Physical Location & Seq
Forward (+)
8693318 .. 8695739
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG054500.1

Sequence Viewer

Length: 351 bp
ATGATCAATGGGGTCTCGGTGATTACGTCAGTTGATAACAGCTCCGGTGAGGATGAGAGTGCCGGGCTTGATATTCGTGCCTTTTGCTTTCACTGCGTGGTAATGCTTGTCTTTATTTTTGTGGAAATCAAAGGCTTGAGGAATAAGATGATATGGAAGGAGTTTCTGGTTGGAGTGTGGCATGCTGTTGCTGCATGGACATGGGATGCTCAGGACGAAACATGTCGCATTTGGAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAGCTCCCTGGGGATGATTGCCCACTAAAAGTGGCTCGAATGTTGTCTGTATCCACATATGGTCATGCCTTTTTTCAAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
zf-ANAPC11

Protein Analysis

116

Amino Acids

13.03

Weight (kDa)

5.18

Isoelectric Point (pI)

22.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-ANAPC11 PF12861 72 - 100 1e-11 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26640
fragaria_vesca FvH4_6g43400
malus_domestica MD05G1140700.v1.1
prunus_persica Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1
pyrus_communis pycom01g12800
rosa_chinensis RchiOBHm_Chr1g0321441
rosa_roxburghii Rroxscaffold_4G00327730
rosa_samantha Rh1BG042700 Rh1CG047400 Rh1DG052600 Rh1DG054500 Rh3DG092400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 221
AgsI TTSAA 1 cut(s) 344
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 2 cut(s) 42, 271
AluI AGCT 2 cut(s) 42, 271
Alw26I GTCTC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 2 cut(s) 31, 59
BbvI GCAGC 1 cut(s) 178
BccI CCATC 2 cut(s) 232, 242
BciT130I CCWGG 1 cut(s) 276
BciVI GTATCC 1 cut(s) 328
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 19
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 64, 276
BmrFI CCNGG 2 cut(s) 64, 276
BmsI GCATC 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 157
BpuMI CCSGG 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 274, 275
BsaWI WCCGGW 1 cut(s) 44
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 274, 275
BseGI GGATG 4 cut(s) 58, 211, 243, 286
BseMII CTCAG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 178
BsiSI CCGG 2 cut(s) 45, 63
BsmAI GTCTC 1 cut(s) 19
Bso31I GGTCTC 1 cut(s) 19
Bsp143I GATC 1 cut(s) 3
BspCNI CTCAG 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 274, 275
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 4 cut(s) 58, 211, 243, 286
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 93, 191
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 2 cut(s) 185, 225
BstSCI CCNGG 2 cut(s) 62, 274
BstV1I GCAGC 1 cut(s) 178
BsuI GTATCC 1 cut(s) 328
BtsCI GGATG 4 cut(s) 58, 211, 243, 286
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 183
CviAII CATG 5 cut(s) 182, 195, 201, 222, 332
CviJI RGCY 5 cut(s) 42, 67, 135, 271, 302
CviKI_1 RGCY 5 cut(s) 42, 67, 135, 271, 302
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraIII CACNNNGTG 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 274
FaeI CATG 5 cut(s) 185, 198, 204, 225, 335
FaiI YATR 8 cut(s) 154, 183, 196, 202, 223, 325, 327, 333
FatI CATG 5 cut(s) 181, 194, 200, 221, 331
FauNDI CATATG 1 cut(s) 325
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 4 cut(s) 65, 218, 250, 293
Fsp4HI GCNGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 192
HapII CCGG 2 cut(s) 45, 63
Hin1II CATG 5 cut(s) 185, 198, 204, 225, 335
HpaII CCGG 2 cut(s) 45, 63
HphI GGTGA 2 cut(s) 31, 59
Hpy188III TCNNGA 2 cut(s) 212, 260
HpyAV CCTTC 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 191
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 5 cut(s) 185, 198, 204, 225, 335
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 47, 276
LpnPI CCDG 7 cut(s) 58, 76, 152, 197, 261, 273, 288
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 196
MaeII ACGT 1 cut(s) 26
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 3 cut(s) 43, 132, 228
MslI CAYNNNNRTG 1 cut(s) 199
MspI CCGG 2 cut(s) 45, 63
MspR9I CCNGG 2 cut(s) 64, 276
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 93, 191
NciI CCSGG 1 cut(s) 64
NdeI CATATG 1 cut(s) 325
NdeII GATC 1 cut(s) 3
NlaIII CATG 5 cut(s) 185, 198, 204, 225, 335
NspI RCATGY 2 cut(s) 185, 225
PaeI GCATGC 1 cut(s) 185
PasI CCCWGGG 1 cut(s) 275
PciI ACATGT 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PkrI GCNGC 1 cut(s) 193
PscI ACATGT 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 199
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 1 cut(s) 3
ScrFI CCNGG 2 cut(s) 64, 276
SetI ASST 3 cut(s) 29, 44, 273
SfaNI GCATC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
SphI GCATGC 1 cut(s) 185
StyD4I CCNGG 2 cut(s) 62, 274
TaiI ACGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 304
TscAI CASTG 1 cut(s) 98
TseI GCWGC 1 cut(s) 191
TspRI CASTG 1 cut(s) 98
XceI RCATGY 2 cut(s) 185, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.