pycom01g12800

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0015826
Physical Location & Seq
Forward (+)
13466458 .. 13468564
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g12800.1

Sequence Viewer

Length: 441 bp
ATGAAAGTCAACATCTTTCAGTGCGATTATCTTTTTAACAACGATCGTGATAATTTGACAATCCCATTTGCTCGGTGGCACGCTGTCGCTTCATGGACATGGGATGCACAAGACGAAACATGTGGGATTTGTAGGATGGCATTTGATGGTTGTTGTCTTGATTGTAAACTCCCTGGGGATGATTGCCCGCTAAGAAGGTCAGAAGAACAAGCTCTTGAAGTCACGAAGGTGGTAAGCTTGAGCATTGTGTCTTCTAGGAGGCCTGTGATTCTTGCAGACGAGACCTATGCCACGAAGACTGATGCACTGGAAGCTGTTATGCATGCACCTGTCCATTTTCAAGGATCTCTGACTTTTGTGTGCGATCGGTATCAATTGCTCATATTGGCTGTAATGTATACTACTGATGAGGATTTGGAGTCTATAACCAATGTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
zf-ANAPC11

Protein Analysis

147

Amino Acids

16.56

Weight (kDa)

4.54

Isoelectric Point (pI)

56.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-ANAPC11 PF12861 38 - 64 2.5e-11 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26640
fragaria_vesca FvH4_6g43400
malus_domestica MD05G1140700.v1.1
prunus_persica Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1
pyrus_communis pycom01g12800
rosa_chinensis RchiOBHm_Chr1g0321441
rosa_roxburghii Rroxscaffold_4G00327730
rosa_samantha Rh1BG042700 Rh1CG047400 Rh1DG052600 Rh1DG054500 Rh3DG092400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 398
AciI CCGC 1 cut(s) 188
AclWI GGATC 1 cut(s) 352
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 3 cut(s) 218, 341, 437
AjnI CCWGG 1 cut(s) 172
AleI CACNNNNGTG 1 cut(s) 227
AluBI AGCT 3 cut(s) 212, 237, 314
AluI AGCT 3 cut(s) 212, 237, 314
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 1 cut(s) 352
AoxI GGCC 1 cut(s) 260
BbsI GAAGAC 2 cut(s) 243, 302
BccI CCATC 2 cut(s) 130, 140
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 94, 292
BpiI GAAGAC 2 cut(s) 243, 302
BpuEI CTTGAG 1 cut(s) 259
BsaBI GATNNNNATC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 172, 173
Bse1I ACTGG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 172, 173
BseGI GGATG 3 cut(s) 109, 141, 184
BseJI GATNNNNATC 1 cut(s) 369
BseNI ACTGG 1 cut(s) 312
Bsh1285I CGRYCG 2 cut(s) 46, 367
BshFI GGCC 1 cut(s) 262
BsiEI CGRYCG 2 cut(s) 46, 367
BsmAI GTCTC 1 cut(s) 275
BsnI GGCC 1 cut(s) 262
Bso31I GGTCTC 1 cut(s) 275
Bsp143I GATC 3 cut(s) 43, 344, 364
BspACI CCGC 1 cut(s) 188
BspANI GGCC 1 cut(s) 262
BspPI GGATC 1 cut(s) 352
BspTNI GGTCTC 1 cut(s) 275
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 2 cut(s) 172, 173
BssMI GATC 3 cut(s) 43, 344, 364
BssNAI GTATAC 1 cut(s) 399
Bst1107I GTATAC 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 81, 188, 324
BstDEI CTNAG 1 cut(s) 191
BstF5I GGATG 3 cut(s) 109, 141, 184
BstKTI GATC 3 cut(s) 46, 347, 367
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 3 cut(s) 43, 344, 364
BstMCI CGRYCG 2 cut(s) 46, 367
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 2 cut(s) 123, 326
BstSCI CCNGG 1 cut(s) 172
BstV2I GAAGAC 2 cut(s) 243, 302
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BstZ17I GTATAC 1 cut(s) 399
BsuRI GGCC 1 cut(s) 262
BtsCI GGATG 3 cut(s) 109, 141, 184
BtsIMutI CAGTG 2 cut(s) 26, 305
Cac8I GCNNGC 3 cut(s) 81, 188, 324
CviAII CATG 4 cut(s) 93, 99, 120, 323
CviJI RGCY 5 cut(s) 212, 237, 262, 314, 389
CviKI_1 RGCY 5 cut(s) 212, 237, 262, 314, 389
DdeI CTNAG 1 cut(s) 191
DpnI GATC 3 cut(s) 45, 346, 366
DpnII GATC 3 cut(s) 43, 344, 364
Eco147I AGGCCT 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 324
FaeI CATG 4 cut(s) 96, 102, 123, 326
FaiI YATR 9 cut(s) 94, 100, 121, 288, 320, 324, 383, 399, 425
FatI CATG 4 cut(s) 92, 98, 119, 322
FauI CCCGC 1 cut(s) 195
FblI GTMKAC 1 cut(s) 398
FokI GGATG 3 cut(s) 116, 148, 191
FspBI CTAG 1 cut(s) 255
HaeIII GGCC 1 cut(s) 262
Hin1II CATG 4 cut(s) 96, 102, 123, 326
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 235
HinfI GANTC 2 cut(s) 268, 419
Hpy166II GTNNAC 3 cut(s) 10, 167, 399
Hpy188I TCNGA 2 cut(s) 202, 351
Hpy188III TCNNGA 4 cut(s) 47, 158, 215, 223
Hpy8I GTNNAC 3 cut(s) 10, 167, 399
HpyAV CCTTC 2 cut(s) 189, 220
HpyCH4V TGCA 5 cut(s) 107, 275, 305, 322, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 4 cut(s) 96, 102, 123, 326
Kzo9I GATC 3 cut(s) 43, 344, 364
LpnPI CCDG 5 cut(s) 159, 186, 276, 293, 342
LweI GCATC 2 cut(s) 94, 292
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 220
MalI GATC 3 cut(s) 45, 346, 366
MboI GATC 3 cut(s) 43, 344, 364
MboII GAAGA 3 cut(s) 215, 243, 307
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 1 cut(s) 344
MluCI AATT 2 cut(s) 52, 374
MlyI GAGTC 1 cut(s) 428
MnlI CCTC 2 cut(s) 252, 403
Mph1103I ATGCAT 1 cut(s) 324
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 2 cut(s) 97, 227
MspR9I CCNGG 1 cut(s) 174
MunI CAATTG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 3 cut(s) 43, 344, 364
NlaIII CATG 4 cut(s) 96, 102, 123, 326
NmuCI GTSAC 1 cut(s) 220
NsiI ATGCAT 1 cut(s) 324
NspI RCATGY 2 cut(s) 123, 326
OliI CACNNNNGTG 1 cut(s) 227
PaeI GCATGC 1 cut(s) 326
PasI CCCWGGG 1 cut(s) 173
PceI AGGCCT 1 cut(s) 262
PciI ACATGT 1 cut(s) 119
PfeI GAWTC 1 cut(s) 268
Ple19I CGATCG 2 cut(s) 46, 367
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PscI ACATGT 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PsuI RGATCY 1 cut(s) 344
PvuI CGATCG 2 cut(s) 46, 367
RseI CAYNNNNRTG 2 cut(s) 97, 227
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 3 cut(s) 43, 344, 364
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 174
SetI ASST 7 cut(s) 200, 214, 231, 239, 287, 316, 331
SfaNI GCATC 2 cut(s) 94, 292
SmiMI CAYNNNNRTG 2 cut(s) 97, 227
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SphI GCATGC 1 cut(s) 326
Sse9I AATT 2 cut(s) 52, 374
SseBI AGGCCT 1 cut(s) 262
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 255
StuI AGGCCT 1 cut(s) 262
StyD4I CCNGG 1 cut(s) 172
TasI AATT 2 cut(s) 52, 374
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 2 cut(s) 26, 312
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 17, 81
TspRI CASTG 2 cut(s) 26, 312
XceI RCATGY 2 cut(s) 123, 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 72
XmiI GTMKAC 1 cut(s) 398
XspI CTAG 1 cut(s) 255
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.