MD05G1140700.v1.1

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0015826
Physical Location & Seq
Reverse (-)
27129440 .. 27131617
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1140700.v1.1.491

Sequence Viewer

Length: 249 bp
ATGACCCTTCTCTCTTTGCGAATATCTGCTGGGGATTTTAAACAGAGTATGTGGCATGCTGTCGCTTCATGGACATGGGATGCACAAGACGAAACATGTGGGATTTGTAGGATGGCATTTGATGGTTGTTGTCCCGATTGTAAACTCCCTGGGGATGATTGCCCGCTAAGAGGCCGGATTATTGCATTAGGATTTCACTATTCCAGAACTTGCTGTTTCTCTGATTTGCGACAAAGCCTAATGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
zf-ANAPC11

Protein Analysis

83

Amino Acids

9.18

Weight (kDa)

6.0

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-ANAPC11 PF12861 30 - 66 1e-13 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26640
fragaria_vesca FvH4_6g43400
malus_domestica MD05G1140700.v1.1
prunus_persica Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1
pyrus_communis pycom01g12800
rosa_chinensis RchiOBHm_Chr1g0321441
rosa_roxburghii Rroxscaffold_4G00327730
rosa_samantha Rh1BG042700 Rh1CG047400 Rh1DG052600 Rh1DG054500 Rh3DG092400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 95
AjnI CCWGG 1 cut(s) 148
AoxI GGCC 1 cut(s) 172
BccI CCATC 2 cut(s) 106, 116
BciT130I CCWGG 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 148, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 148, 149
BseGI GGATG 3 cut(s) 85, 117, 160
BseLI CCNNNNNNNGG 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 29
BshFI GGCC 1 cut(s) 174
BsiSI CCGG 1 cut(s) 175
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 117
BsnI GGCC 1 cut(s) 174
BspACI CCGC 1 cut(s) 164
BspANI GGCC 1 cut(s) 174
BssECI CCNNGG 2 cut(s) 148, 149
Bst2UI CCWGG 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 57, 164
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 3 cut(s) 85, 117, 160
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 2 cut(s) 59, 99
BstSCI CCNGG 1 cut(s) 148
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 3 cut(s) 85, 117, 160
Cac8I GCNNGC 2 cut(s) 57, 164
CviAII CATG 4 cut(s) 56, 69, 75, 96
CviJI RGCY 3 cut(s) 174, 237, 245
CviKI_1 RGCY 3 cut(s) 174, 237, 245
DdeI CTNAG 1 cut(s) 167
DraI TTTAAA 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 4 cut(s) 59, 72, 78, 99
FaiI YATR 5 cut(s) 50, 57, 70, 76, 97
FaqI GGGAC 1 cut(s) 117
FatI CATG 4 cut(s) 55, 68, 74, 95
FauI CCCGC 1 cut(s) 171
FokI GGATG 3 cut(s) 92, 124, 167
GsaI CCCAGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 174
HapII CCGG 1 cut(s) 175
Hin1II CATG 4 cut(s) 59, 72, 78, 99
HpaII CCGG 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 2 cut(s) 134, 204
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 17
HpyCH4V TGCA 2 cut(s) 83, 185
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 4 cut(s) 59, 72, 78, 99
LpnPI CCDG 5 cut(s) 15, 135, 162, 188, 217
LweI GCATC 1 cut(s) 70
MnlI CCTC 1 cut(s) 164
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 73
MspI CCGG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NlaIII CATG 4 cut(s) 59, 72, 78, 99
NspI RCATGY 2 cut(s) 59, 99
PaeI GCATGC 1 cut(s) 59
PasI CCCWGGG 1 cut(s) 149
PciI ACATGT 1 cut(s) 95
PscI ACATGT 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 148
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 73
SaqAI TTAA 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 150
SfaNI GCATC 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 73
SphI GCATGC 1 cut(s) 59
SsiI CCGC 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 148
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 57
XceI RCATGY 2 cut(s) 59, 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.