Rh1DG052600

Anaphase-promoting complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0015826
Physical Location & Seq
Forward (+)
8465546 .. 8467822
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG052600.1

Sequence Viewer

Length: 222 bp
ATGAGAGTGCCGGGCTTGATATTCGTGCCTTTTGCTTTCACTGCGTGGTGGCATGCTGTTGCTGCATGGACATGGGATGCTCAGGACGAAACATGTGGCATTTGGAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAGCTCCCTGGGGATGATTGCCCACTAAAAGTGGCTCGAATGTTGTCTGTATCCACATATGGTCATGCCTTTTTTCAAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
zf-ANAPC11

Protein Analysis

73

Amino Acids

8.21

Weight (kDa)

5.36

Isoelectric Point (pI)

22.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-ANAPC11 PF12861 29 - 58 1.8e-13 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26640
fragaria_vesca FvH4_6g43400
malus_domestica MD05G1140700.v1.1
prunus_persica Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1 Prupe.6G303800_v2.0.a1
pyrus_communis pycom01g12800
rosa_chinensis RchiOBHm_Chr1g0321441
rosa_roxburghii Rroxscaffold_4G00327730
rosa_samantha Rh1BG042700 Rh1CG047400 Rh1DG052600 Rh1DG054500 Rh3DG092400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 45
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 1 cut(s) 215
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 12
BbvI GCAGC 1 cut(s) 49
BccI CCATC 2 cut(s) 103, 113
BciT130I CCWGG 1 cut(s) 147
BciVI GTATCC 1 cut(s) 199
BcnI CCSGG 1 cut(s) 12
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 12, 147
BmrFI CCNGG 2 cut(s) 12, 147
BmsI GCATC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 145, 146
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 145, 146
BseGI GGATG 3 cut(s) 82, 114, 157
BseMII CTCAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 49
BsiSI CCGG 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 145, 146
Bst2UI CCWGG 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 3 cut(s) 82, 114, 157
BstMWI GCNNNNNNNGC 2 cut(s) 41, 62
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 2 cut(s) 56, 96
BstSCI CCNGG 2 cut(s) 10, 145
BstV1I GCAGC 1 cut(s) 49
BsuI GTATCC 1 cut(s) 199
BtsCI GGATG 3 cut(s) 82, 114, 157
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 54
CviAII CATG 5 cut(s) 53, 66, 72, 93, 203
CviJI RGCY 3 cut(s) 15, 142, 173
CviKI_1 RGCY 3 cut(s) 15, 142, 173
DdeI CTNAG 1 cut(s) 81
DraIII CACNNNGTG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 145
FaeI CATG 5 cut(s) 56, 69, 75, 96, 206
FaiI YATR 7 cut(s) 54, 67, 73, 94, 196, 198, 204
FatI CATG 5 cut(s) 52, 65, 71, 92, 202
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 3 cut(s) 89, 121, 164
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
HapII CCGG 1 cut(s) 11
Hin1II CATG 5 cut(s) 56, 69, 75, 96, 206
HpaII CCGG 1 cut(s) 11
Hpy188III TCNNGA 2 cut(s) 83, 131
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 62
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 5 cut(s) 56, 69, 75, 96, 206
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 5 cut(s) 24, 68, 132, 144, 159
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 67
MnlI CCTC 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 70
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 2 cut(s) 12, 147
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 41, 62
NciI CCSGG 1 cut(s) 12
NdeI CATATG 1 cut(s) 196
NlaIII CATG 5 cut(s) 56, 69, 75, 96, 206
NspI RCATGY 2 cut(s) 56, 96
PaeI GCATGC 1 cut(s) 56
PasI CCCWGGG 1 cut(s) 146
PciI ACATGT 1 cut(s) 92
PkrI GCNGC 1 cut(s) 64
PscI ACATGT 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 70
SatI GCNGC 1 cut(s) 63
ScrFI CCNGG 2 cut(s) 12, 147
SetI ASST 1 cut(s) 144
SfaNI GCATC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 70
SphI GCATGC 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 10, 145
TaqI TCGA 1 cut(s) 175
TscAI CASTG 1 cut(s) 46
TseI GCWGC 1 cut(s) 62
TspRI CASTG 1 cut(s) 46
XceI RCATGY 2 cut(s) 56, 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.