Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012865

Physical Location & Seq

Genomic Coordinates Forward (+)

12588741 .. 12591748

Gene Structure 3008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G33320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGCAAAGCTCCGCCGTATTCTCCCTCTCTCCGTCGCTTCCTCTCCTAAAACCACGTCGGCTCTCTCTCCGCCACCATCCCATAACCACCGCCGCTTCTTCAAGCGATCTAAACGTTTCTCCAAATGTTGTCTCTATTCCTTCTTTATCTCGTCGATCTTGGCGTCTCGCTTCGTCTGATTCGCCTCTCCGTGCTTGGTCCGGTGTTCCTTCTCCGATCTCTCACTCCTTAGACACGAATCGTTTCAGAACCGCCGCTACTGCAGTTCCTGAAAGTGCTGAGGAAGGTGATAACAGTGGTAAATTGACGAAGGTTTTGGAACTTGGCTTGTTGTTCGCTATGTGGTACCTTTTCAATATCTACTTCAACATCTACAATAAACAGGTTTTGAAAGCTCTACATGCTCCAATGACTGTGACTTTGGTTCAGTTTGCTGTTGGTAGTGTGCTCATTACTATCATGTGGGTTCTTAACCTGTACAAGAGACCAAAGATCAGTGGTGCTCAGCTAGCTGCCATCTTGCCGCTTGCTGTTGTGCACACACTTGGTAATCTGTTTACGAACATGAGTCTTGGGAAAGTTTCTGTTTCCTTTACTCACACCATTAAAGCCATGGAGCCTTTCTTCTCTGTTTTATTGTCTGCTATGTTTCTCGGGGAGAAACCTACTCCATGGGTACTCGGTGCCATTGTACCAATTGTTGGTGGAGTTGCACTTGCTTCAATTTCGGAGGTCTCATTCAACTGGGCTGGATTTTCGAGTGCAATGGCATCAAACTTGACTAACCAATCCCGTAATGTGCTGAGTAAGAAAGTCATGGTTAAGAAAGATGATTCTCTTGACAACATCACTCTCTTCTCAATTATAACATTGATGTCTCTCGTTCTGATGGCTCCTGTGACTTTCTTTACGGAAGGCATCAAGTTCACTCCTTCATACATTCAATCAGCTGGTGTGAATGTTAAACAAATATATACAAAGTCTCTTATCGCTGCACTCTGCTTCCACGCATACCAGCAGGTGTCGTACATGATATTGGCGAGAGTATCACCGGTTACACATTCTGTCGGAAACTGTGTGAAACGTGTTGTGGTTATTGTGAGCTCTGTCATCTTCTTCAAGACACCCGTCTCGCCTGTTAATGCTTTCGGAACTGGAATCGCCCTTGCGGGTGTCTTCTTATACTCCAGAGTGAAGGGTATTAAGCCAAAGCCAAAGACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009670 GO:0009941 GO:0015075 GO:0015120 GO:0015121 GO:0015144 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

408

Amino Acids

44.22

Weight (kDa)

10.16

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	107 - 396	2.6e-125	Triose-phosphate Transporter family
EamA	PF00892	124 - 241	7.8e-13	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G33320
fragaria_vesca	FvH4_5g05430
malus_domestica	MD06G1172800.v1.1 MD14G1178800.v1.1
prunus_persica	Prupe.5G172100_v2.0.a1 Prupe.5G172100_v2.0.a1
pyrus_communis	pycom06g15390 pycom14g14900
rosa_chinensis	RchiOBHm_Chr7g0193401
rosa_laevigata	RLG00000004271
rosa_multiflora	Rmu_ssc0000092.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262130
rosa_rugosa	Rorug07G0009300
rosa_samantha	Rh7AG135800 Rh7BG136100 Rh7CG139700 Rh7DG137500
rosa_wichuraiana	Rw7G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	866
AarI	CACCTGC	1 cut(s)	1009
Acc36I	ACCTGC	1 cut(s)	1009
Acc65I	GGTACC	1 cut(s)	345
AccB1I	GGYRCC	2 cut(s)	345, 683
AccB7I	CCANNNNNTGG	1 cut(s)	701
AciI	CCGC	8 cut(s)	12, 70, 90, 93, 252, 255, 524, 1169
AclI	AACGTT	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	163
AfaI	GTAC	5 cut(s)	347, 479, 678, 693, 1028
AfiI	CCNNNNNNNGG	1 cut(s)	701
AflIII	ACRYGT	1 cut(s)	1084
AgeI	ACCGGT	1 cut(s)	1051
AgsI	TTSAA	8 cut(s)	102, 355, 367, 391, 723, 742, 944, 1120
AjiI	CACGTC	1 cut(s)	56
AluBI	AGCT	6 cut(s)	9, 395, 508, 512, 950, 1104
AluI	AGCT	6 cut(s)	9, 395, 508, 512, 950, 1104
Alw21I	GWGCWC	4 cut(s)	450, 505, 540, 1106
Alw26I	GTCTC	7 cut(s)	136, 170, 478, 739, 882, 987, 1135
Alw44I	GTGCAC	1 cut(s)	536
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	653
ApaLI	GTGCAC	1 cut(s)	536
ApeKI	GCWGC	2 cut(s)	512, 992
ArsI	GACNNNNNNTTYG	4 cut(s)	298, 330, 403, 435
AsiGI	ACCGGT	1 cut(s)	1051
Asp700I	GAANNNNTTC	1 cut(s)	242
Asp718I	GGTACC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	299, 1041
AsuNHI	GCTAGC	1 cut(s)	508
AvaI	CYCGRG	1 cut(s)	653
AvaII	GGWCC	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	540
BanI	GGYRCC	2 cut(s)	345, 683
BanII	GRGCYC	1 cut(s)	1106
BbsI	GAAGAC	1 cut(s)	1168
Bbv12I	GWGCWC	4 cut(s)	450, 505, 540, 1106
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	499, 979
BccI	CCATC	3 cut(s)	84, 524, 883
BcoDI	GTCTC	7 cut(s)	136, 170, 478, 739, 882, 987, 1135
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	1009
BisI	GCNGC	5 cut(s)	93, 255, 513, 524, 993
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	5 cut(s)	94, 256, 514, 525, 994
Bme18I	GGWCC	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	653
BmgBI	CACGTC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	4 cut(s)	347, 618, 685, 894
BmrI	ACTGGG	1 cut(s)	754
BmsI	GCATC	2 cut(s)	779, 927
BmtI	GCTAGC	1 cut(s)	512
BmuI	ACTGGG	1 cut(s)	754
BoxI	GACNNNNGTC	1 cut(s)	1127
BpiI	GAAGAC	1 cut(s)	1168
BpmI	CTGGAG	1 cut(s)	1171
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	163
BsaI	GGTCTC	2 cut(s)	478, 739
BsaJI	CCNNGG	2 cut(s)	612, 671
BsaWI	WCCGGW	2 cut(s)	200, 1051
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse118I	RCCGGY	1 cut(s)	1051
Bse1I	ACTGG	2 cut(s)	749, 1159
Bse3DI	GCAATG	1 cut(s)	771
BseDI	CCNNGG	2 cut(s)	612, 671
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	3 cut(s)	270, 518, 794
BseNI	ACTGG	2 cut(s)	749, 1159
BseSI	GKGCMC	1 cut(s)	540
BseXI	GCAGC	2 cut(s)	499, 979
BsgI	GTGCAG	1 cut(s)	978
BshNI	GGYRCC	2 cut(s)	345, 683
BshTI	ACCGGT	1 cut(s)	1051
BsiHKAI	GWGCWC	4 cut(s)	450, 505, 540, 1106
BsiHKCI	CYCGRG	1 cut(s)	653
BsiSI	CCGG	2 cut(s)	201, 1052
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	7 cut(s)	136, 170, 478, 739, 882, 987, 1135
BsmBI	CGTCTC	2 cut(s)	170, 1135
Bso31I	GGTCTC	2 cut(s)	478, 739
BsoBI	CYCGRG	1 cut(s)	653
Bsp1286I	GDGCHC	4 cut(s)	450, 505, 540, 1106
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	106, 155, 216, 492
Bsp1720I	GCTNAGC	1 cut(s)	504
Bsp19I	CCATGG	2 cut(s)	612, 671
BspACI	CCGC	8 cut(s)	12, 70, 90, 93, 252, 255, 524, 1169
BspCNI	CTCAG	3 cut(s)	271, 517, 795
BspLI	GGNNCC	4 cut(s)	347, 618, 685, 894
BspMAI	CTGCAG	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	1009
BspOI	GCTAGC	1 cut(s)	512
BspT107I	GGYRCC	2 cut(s)	345, 683
BspTNI	GGTCTC	2 cut(s)	478, 739
BsrDI	GCAATG	1 cut(s)	771
BsrFI	RCCGGY	1 cut(s)	1051
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	749, 1159
BssAI	RCCGGY	1 cut(s)	1051
BssECI	CCNNGG	2 cut(s)	612, 671
BssMI	GATC	4 cut(s)	106, 155, 216, 492
BssNI	GRCGYC	1 cut(s)	163
BssT1I	CCWWGG	2 cut(s)	612, 671
Bst4CI	ACNGT	3 cut(s)	296, 415, 1076
Bst6I	CTCTTC	1 cut(s)	860
BstACI	GRCGYC	1 cut(s)	163
BstAUI	TGTACA	1 cut(s)	477
BstC8I	GCNNGC	2 cut(s)	510, 528
BstDEI	CTNAG	4 cut(s)	229, 279, 504, 803
BstDSI	CCRYGG	2 cut(s)	612, 671
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	4 cut(s)	109, 158, 219, 495
BstMAI	GTCTC	7 cut(s)	136, 170, 478, 739, 882, 987, 1135
BstMBI	GATC	4 cut(s)	106, 155, 216, 492
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 401, 509
BstNSI	RCATGY	1 cut(s)	404
BstPAI	GACNNNNGTC	1 cut(s)	1127
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	540
BstV1I	GCAGC	2 cut(s)	499, 979
BstV2I	GAAGAC	1 cut(s)	1168
BtgI	CCRYGG	2 cut(s)	612, 671
BtrI	CACGTC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	301, 502
BveI	ACCTGC	1 cut(s)	1009
Cac8I	GCNNGC	2 cut(s)	510, 528
CaiI	CAGNNNCTG	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	1051
Cfr13I	GGNCC	1 cut(s)	198
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	5 cut(s)	346, 478, 677, 692, 1027
CspAI	ACCGGT	1 cut(s)	1051
CviAII	CATG	7 cut(s)	401, 460, 565, 613, 672, 817, 1030
CviQI	GTAC	5 cut(s)	346, 478, 677, 692, 1027
DdeI	CTNAG	4 cut(s)	229, 279, 504, 803
DpnI	GATC	4 cut(s)	108, 157, 218, 494
DpnII	GATC	4 cut(s)	106, 155, 216, 492
Eam1104I	CTCTTC	1 cut(s)	860
EarI	CTCTTC	1 cut(s)	860
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	1104
Eco130I	CCWWGG	2 cut(s)	612, 671
Eco24I	GRGCYC	1 cut(s)	1106
Eco31I	GGTCTC	2 cut(s)	478, 739
Eco47I	GGWCC	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	1104
Eco88I	CYCGRG	1 cut(s)	653
EcoICRI	GAGCTC	1 cut(s)	1104
EcoT14I	CCWWGG	2 cut(s)	612, 671
EcoT38I	GRGCYC	1 cut(s)	1106
ErhI	CCWWGG	2 cut(s)	612, 671
Esp3I	CGTCTC	2 cut(s)	170, 1135
FaeI	CATG	7 cut(s)	404, 463, 568, 616, 675, 820, 1033
FatI	CATG	7 cut(s)	400, 459, 564, 612, 671, 816, 1029
FauI	CCCGC	1 cut(s)	1162
Fnu4HI	GCNGC	5 cut(s)	93, 255, 513, 524, 993
FokI	GGATG	1 cut(s)	63
FriOI	GRGCYC	1 cut(s)	1106
Fsp4HI	GCNGC	5 cut(s)	93, 255, 513, 524, 993
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	5 cut(s)	93, 255, 513, 524, 993
GsuI	CTGGAG	1 cut(s)	1171
HapII	CCGG	2 cut(s)	201, 1052
HgaI	GACGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	163
Hin1II	CATG	7 cut(s)	404, 463, 568, 616, 675, 820, 1033
HinfI	GANTC	5 cut(s)	179, 238, 568, 833, 1158
HpaII	CCGG	2 cut(s)	201, 1052
HphI	GGTGA	2 cut(s)	299, 1041
Hpy166II	GTNNAC	3 cut(s)	538, 558, 927
Hpy188I	TCNGA	7 cut(s)	178, 216, 248, 730, 888, 1070, 1151
Hpy188III	TCNNGA	4 cut(s)	269, 839, 1120, 1188
Hpy8I	GTNNAC	3 cut(s)	538, 558, 927
Hpy99I	CGWCG	3 cut(s)	37, 60, 156
HpyAV	CCTTC	7 cut(s)	150, 219, 278, 304, 908, 942, 1189
HpyCH4III	ACNGT	3 cut(s)	296, 415, 1076
HpyCH4IV	ACGT	3 cut(s)	55, 114, 1084
HpyCH4V	TGCA	6 cut(s)	4, 263, 538, 713, 764, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 401, 509
HpyF3I	CTNAG	4 cut(s)	229, 279, 504, 803
HpySE526I	ACGT	3 cut(s)	55, 114, 1084
Hsp92I	GRCGYC	1 cut(s)	163
Hsp92II	CATG	7 cut(s)	404, 463, 568, 616, 675, 820, 1033
KpnI	GGTACC	1 cut(s)	349
Kzo9I	GATC	4 cut(s)	106, 155, 216, 492
LmnI	GCTCC	4 cut(s)	14, 409, 616, 898
Lsp1109I	GCAGC	2 cut(s)	499, 979
LweI	GCATC	2 cut(s)	779, 927
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	3 cut(s)	55, 114, 1084
MaeIII	GTNAC	3 cut(s)	415, 898, 1054
MalI	GATC	4 cut(s)	108, 157, 218, 494
MboI	GATC	4 cut(s)	106, 155, 216, 492
MboII	GAAGA	6 cut(s)	90, 616, 847, 1105, 1108, 1168
MfeI	CAATTG	1 cut(s)	696
MhlI	GDGCHC	4 cut(s)	450, 505, 540, 1106
MluCI	AATT	4 cut(s)	302, 696, 723, 861
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	1 cut(s)	1048
MnlI	CCTC	5 cut(s)	35, 51, 195, 274, 724
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	7 cut(s)	471, 606, 822, 963, 1140, 1203, 1225
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	2 cut(s)	201, 1052
MunI	CAATTG	1 cut(s)	696
MwoI	GCNNNNNNNGC	3 cut(s)	260, 401, 509
NcoI	CCATGG	2 cut(s)	612, 671
NdeII	GATC	4 cut(s)	106, 155, 216, 492
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	7 cut(s)	404, 463, 568, 616, 675, 820, 1033
NlaIV	GGNNCC	4 cut(s)	347, 618, 685, 894
NmuCI	GTSAC	2 cut(s)	415, 898
NspI	RCATGY	1 cut(s)	404
PaqCI	CACCTGC	1 cut(s)	1009
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	4 cut(s)	179, 238, 833, 1158
PflMI	CCANNNNNTGG	1 cut(s)	701
PinAI	ACCGGT	1 cut(s)	1051
PkrI	GCNGC	5 cut(s)	94, 256, 514, 525, 994
PleI	GAGTC	1 cut(s)	576
PpsI	GAGTC	1 cut(s)	576
PshAI	GACNNNNGTC	1 cut(s)	1127
PsiI	TTATAA	1 cut(s)	866
Psp124BI	GAGCTC	1 cut(s)	1106
Psp1406I	AACGTT	1 cut(s)	114
PspN4I	GGNNCC	4 cut(s)	347, 618, 685, 894
PspPI	GGNCC	1 cut(s)	198
PsrI	GAACNNNNNNTAC	2 cut(s)	241, 273
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	5 cut(s)	347, 479, 678, 693, 1028
RsaNI	GTAC	5 cut(s)	346, 478, 677, 692, 1027
SacI	GAGCTC	1 cut(s)	1106
SaqAI	TTAA	7 cut(s)	471, 606, 822, 963, 1140, 1203, 1225
SatI	GCNGC	5 cut(s)	93, 255, 513, 524, 993
Sau3AI	GATC	4 cut(s)	106, 155, 216, 492
Sau96I	GGNCC	1 cut(s)	198
SchI	GAGTC	1 cut(s)	577
SduI	GDGCHC	4 cut(s)	450, 505, 540, 1106
SfaNI	GCATC	2 cut(s)	779, 927
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	198
Sse9I	AATT	4 cut(s)	302, 696, 723, 861
SsiI	CCGC	8 cut(s)	12, 70, 90, 93, 252, 255, 524, 1169
SspMI	CTAG	1 cut(s)	509
SstI	GAGCTC	1 cut(s)	1106
StyI	CCWWGG	2 cut(s)	612, 671
TaaI	ACNGT	3 cut(s)	296, 415, 1076
TaiI	ACGT	3 cut(s)	58, 117, 1087
TaqI	TCGA	2 cut(s)	154, 758
TasI	AATT	4 cut(s)	302, 696, 723, 861
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	3 cut(s)	95, 257, 526
TfiI	GAWTC	4 cut(s)	179, 238, 833, 1158
Tru1I	TTAA	7 cut(s)	471, 606, 822, 963, 1140, 1203, 1225
Tru9I	TTAA	7 cut(s)	471, 606, 822, 963, 1140, 1203, 1225
TscAI	CASTG	2 cut(s)	301, 502
TseFI	GTSAC	2 cut(s)	415, 898
TseI	GCWGC	2 cut(s)	512, 992
Tsp45I	GTSAC	2 cut(s)	415, 898
TspDTI	ATGAA	1 cut(s)	924
TspGWI	ACGGA	3 cut(s)	21, 179, 926
TspRI	CASTG	2 cut(s)	301, 502
Van91I	CCANNNNNTGG	1 cut(s)	701
VneI	GTGCAC	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	198
XceI	RCATGY	1 cut(s)	404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	610
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.