Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012865

Physical Location & Seq

Genomic Coordinates Reverse (-)

767870 .. 773229

Gene Structure 5360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0009300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2247 bp

ATGCCATCACTGTTGAGACTACTGCGGCCAATGCAAGCAGAACATCATCATCATCGGCTTCTAATTCGCTTTTCAATAGAATGGTCATTCATCCCGATAACTGCCTGGGACGAAACATGTGGTCTAGGATTAATTACGATGAATATACTTAATACTTATCATCAAGAAAGTTCTATTATGCACGAGAACGTCCAGGTGTATCGAATTGATCTTCATCAGCTAGCGTGGACGAGGTGGTACGTGGGGTGGACGCATTTCATTCTGTTATGGGCAGTCTACTCCTCCTTCTTCACACCTCTGGAGTTCGGCTTCTTCAGAGGTCTGCCGGAGAACCTGTTCATGCTCGACAGCTGCGGCCAGATAGCCTTTCTCATCGATATCATCGTCCGCTTCTTCGTCGCCTATCGCGACTTCCACTCCCACCGCATTGTCTACGATCGCCACCTCATCGCTCTCCGATACCTCAAGTCCCGTTTCCTCGTCGATTTTCTAGGCTGTCTTCCCTGGGATGCCATCTACAAGGCTTCTGGGAGAGAAGAGGCGGTGAGGTACTTATTGTGGATACGGCTAAGCCGGGCACGGAGAGTAACGGAGTTTTTTGAGAAATTGGAGAAAGATATCAGAATCAATTACCTGTTTACAAGAATTGCCAAGCTATTTGTTGTTGAACTTTATAGCACACACACAGCTGCTTGCATATTTTATTATCTGGCTACTACTATGCCTCCATCACAGGAAGGTTACACATGGATTGGGAGTTTGAAGATGGGTGACTATAGCTATGCGCATTTCAGGGAGATTGATCTTTGGAAGCGTTACATAACTTCGCTCTATTTTGCAGTTGTTACCATGGCCACCGTCGGTTATGGAGAGATACATGCAGTGAATGTGAGGGAGATGATATTCATCATGTTTTATGTGTCTTTTGATATGATTCTCGGTGCTTATCTGCTTGGTAACATTGCGGCATTGATAGTGAAAGGATCAAAAACAGAGAAGTTTAGGGACAAGATGGCGGACCTTATCAAATACATGAATAGAAACCGTATTGATAGAGGGATAAGTAAGGAAATTAAAAACCATTTGAGATTACAGTATGACCGTAGCTACACCGAAGCTGCTGTTCTTCAGGATATTCCTGCCTCTATTCGCAGTAAGATTTCACAGAAATTGTATGAGCCATACATCAAAGCAGTTCATCTTTTTAAAGGGTGCTCTACGGGATTCATAAAACAGATAGCAACCAGAATTCATGAGGAGTTTTTCCTTCCAGCAGAAGTGATTATAGAGCAGGGGGATGTAGTAGATCACCTATATATAGTATGCCATGGTGAACTGGAAAAGCTGGGAAGGGGTGAAGATGATGACAGTGACGAGCTCCTTGAGCGTTTGCAAACCTATAGCTCATTTGGAGAGGTTTCTTTTCTTTGCAACACTCCCCAGCCGTATGCTGTTCGGGTTTGTCAACTGTGTAGGGTCTTACGACTTGATAGACAGTCCTTTAGAGAAATACTGGAGATATATTTCTTAGATGGCCGGCTTATCTTGGATAACCTGCTTGAGGGAAAAGACTTGTATACCCGGAATAAGCTTTTGGAATCAGATATCACTCTATATATCGGAAAGCATGAAATGGAGTTAGTTATGAAAGTAAATTGTGCTGCCTATGATGGAGATTTTTATCGAGTAAAACGTTTGATTGGAGCTGGTGTAGATCCAAACAAGGTGGATTATGCTGGAAGGTCCCCTTTGCATGTTTCTGCATCCAAAGGGTACGAGGATATTGCTCGTTTTCTTATTGAAAAAGGGGGAGACGTCAAGATGTCAGATAAGTTTGGGAACACTCCATTGCTTGAAGCCATAAAAAATGGGCATGATCAAGTTGCCTCTTTACTTGTTCAGGCAGGGGCATCACTTACTATTGAAGATGCTGGTGATTTTCTCTGTGCTACTGTAGCAAAGAGGGATTTGGACCTCGTGAAAAGGCTTTTAGCCAATGACATGAATCCAAATGCGAAAAATTATGATCAGAGATCACCACTACATGTAGCTGCTTCAGAAGGGTTATATCCAATGGCAGAGTTCCTATTAGAAGCAGGAGCGAGTGTTCTATCAAAGGACAGATGGGGGAAAACTCCACTTGATGAAGCCCGCATAGGTGGAAGTAACAAGCTAATGCAATTGCTCGAATCTACAAGACTTTCTCAGTTGTCAGAGTTCTCTGATGGTTCTCAAGTAGTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009670 GO:0009941 GO:0015075 GO:0015120 GO:0015121 GO:0015144 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

748

Amino Acids

86.29

Weight (kDa)

6.66

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	83 - 330	1.2e-25	Ion transport protein
Ion_trans_2	PF07885	270 - 326	3.7e-08	Ion channel
cNMP_binding	PF00027	421 - 506	3.6e-16	Cyclic nucleotide-binding domain
Ank_4	PF13637	553 - 600	5.8e-09	Ankyrin repeats (many copies)
Ank_2	PF12796	554 - 643	5.9e-16	Ankyrin repeats (3 copies)
Ank_5	PF13857	570 - 617	3e-07	Ankyrin repeats (many copies)
Ank_4	PF13637	588 - 632	7.9e-06	Ankyrin repeats (many copies)
Ank_2	PF12796	652 - 729	2.7e-08	Ankyrin repeats (3 copies)
Ank_4	PF13637	653 - 697	2.6e-07	Ankyrin repeats (many copies)
Ank_5	PF13857	663 - 717	4.4e-10	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G33320
fragaria_vesca	FvH4_5g05430
malus_domestica	MD06G1172800.v1.1 MD14G1178800.v1.1
prunus_persica	Prupe.5G172100_v2.0.a1 Prupe.5G172100_v2.0.a1
pyrus_communis	pycom06g15390 pycom14g14900
rosa_chinensis	RchiOBHm_Chr7g0193401
rosa_laevigata	RLG00000004271
rosa_multiflora	Rmu_ssc0000092.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262130
rosa_rugosa	Rorug07G0009300
rosa_samantha	Rh7AG135800 Rh7BG136100 Rh7CG139700 Rh7DG137500
rosa_wichuraiana	Rw7G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1818
Acc16I	TGCGCA	1 cut(s)	786
Acc36I	ACCTGC	1 cut(s)	1563
AccI	GTMKAC	3 cut(s)	276, 432, 1577
AccII	CGCG	1 cut(s)	408
AciI	CCGC	8 cut(s)	25, 354, 388, 424, 542, 965, 1016, 2152
AclI	AACGTT	1 cut(s)	1693
AclWI	GGATC	2 cut(s)	991, 1709
AcoI	YGGCCR	4 cut(s)	26, 355, 852, 1534
AcsI	RAATTY	1 cut(s)	1248
AcuI	CTGAAG	3 cut(s)	298, 1112, 2040
AcyI	GRCGYC	1 cut(s)	1815
AfaI	GTAC	3 cut(s)	239, 551, 1775
AfiI	CCNNNNNNNGG	1 cut(s)	1561
AflIII	ACRYGT	2 cut(s)	116, 2044
AgsI	TTSAA	6 cut(s)	75, 668, 763, 1802, 1856, 1925
AjnI	CCWGG	3 cut(s)	104, 192, 503
AjuI	GAANNNNNNNTTGG	2 cut(s)	1577, 1609
AloI	GAACNNNNNNTCC	4 cut(s)	320, 352, 2091, 2123
Alw21I	GWGCWC	2 cut(s)	1217, 1380
Alw26I	GTCTC	2 cut(s)	10, 1806
AlwI	GGATC	2 cut(s)	991, 1709
AoxI	GGCC	4 cut(s)	26, 355, 852, 1534
ApeKI	GCWGC	5 cut(s)	351, 689, 1118, 1661, 2051
ApoI	RAATTY	1 cut(s)	1248
AseI	ATTAAT	1 cut(s)	131
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	787
AspS9I	GGNCC	3 cut(s)	1018, 1743, 1972
AsuC2I	CCSGG	2 cut(s)	575, 1582
AsuHPI	GGTGA	7 cut(s)	556, 782, 1301, 1343, 1367, 1946, 2028
AsuNHI	GCTAGC	1 cut(s)	220
AvaII	GGWCC	3 cut(s)	1018, 1743, 1972
BaeGI	GKGCMC	1 cut(s)	580
BalI	TGGCCA	1 cut(s)	854
BanII	GRGCYC	1 cut(s)	1380
BauI	CACGAG	2 cut(s)	182, 1976
BbsI	GAAGAC	1 cut(s)	491
Bbv12I	GWGCWC	2 cut(s)	1217, 1380
BbvI	GCAGC	5 cut(s)	338, 676, 1105, 1648, 2038
BccI	CCATC	9 cut(s)	13, 521, 736, 760, 1006, 1526, 1664, 2118, 2219
BceAI	ACGGC	2 cut(s)	581, 1429
BcgI	CGANNNNNNTGC	2 cut(s)	1766, 1800
BciT130I	CCWGG	3 cut(s)	106, 194, 505
BciVI	GTATCC	1 cut(s)	555
BclI	TGATCA	2 cut(s)	1876, 2026
BcnI	CCSGG	2 cut(s)	575, 1582
BcoDI	GTCTC	2 cut(s)	10, 1806
BfaI	CTAG	3 cut(s)	125, 221, 491
BfmI	CTRYAG	3 cut(s)	775, 1399, 1953
BfuAI	ACCTGC	1 cut(s)	1563
BfuI	GTATCC	1 cut(s)	555
BisI	GCNGC	8 cut(s)	26, 352, 355, 690, 966, 1119, 1662, 2052
BlpI	GCTNAGC	1 cut(s)	569
BlsI	GCNGC	8 cut(s)	27, 353, 356, 691, 967, 1120, 1663, 2053
Bme1390I	CCNGG	5 cut(s)	106, 194, 505, 575, 1582
Bme18I	GGWCC	3 cut(s)	1018, 1743, 1972
BmgT120I	GGNCC	3 cut(s)	1018, 1743, 1972
BmiI	GGNNCC	1 cut(s)	1745
BmrFI	CCNGG	5 cut(s)	106, 194, 505, 575, 1582
BmsI	GCATC	4 cut(s)	499, 1772, 1918, 1919
BmtI	GCTAGC	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	491
BpmI	CTGGAG	2 cut(s)	320, 1535
Bpu1102I	GCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	4 cut(s)	449, 1403, 1580, 2217
BpuMI	CCSGG	2 cut(s)	575, 1582
Bsa29I	ATCGAT	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	241
BsaBI	GATNNNNATC	3 cut(s)	213, 905, 1680
BsaHI	GRCGYC	1 cut(s)	1815
BsaJI	CCNNGG	5 cut(s)	105, 503, 504, 849, 1327
Bsc4I	CCNNNNNNNGG	1 cut(s)	1561
Bse118I	RCCGGY	1 cut(s)	1536
Bse1I	ACTGG	2 cut(s)	1341, 1518
Bse3DI	GCAATG	2 cut(s)	960, 1847
Bse8I	GATNNNNATC	3 cut(s)	213, 905, 1680
BseBI	CCWGG	3 cut(s)	106, 194, 505
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	5 cut(s)	105, 503, 504, 849, 1327
BseGI	GGATG	4 cut(s)	90, 514, 1303, 1763
BseJI	GATNNNNATC	3 cut(s)	213, 905, 1680
BseLI	CCNNNNNNNGG	1 cut(s)	1561
BseMI	GCAATG	2 cut(s)	960, 1847
BseMII	CTCAG	1 cut(s)	2219
BseNI	ACTGG	2 cut(s)	1341, 1518
BseRI	GAGGAG	2 cut(s)	271, 1271
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	5 cut(s)	338, 676, 1105, 1648, 2038
BseYI	CCCAGC	2 cut(s)	1345, 1440
Bsh1236I	CGCG	1 cut(s)	408
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	4 cut(s)	28, 357, 854, 1536
BshVI	ATCGAT	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	2 cut(s)	1217, 1380
BsiSI	CCGG	4 cut(s)	326, 574, 1537, 1582
BslFI	GGGAC	4 cut(s)	122, 454, 1019, 1729
BslI	CCNNNNNNNGG	1 cut(s)	1561
BsmAI	GTCTC	2 cut(s)	10, 1806
BsmBI	CGTCTC	1 cut(s)	1806
BsmFI	GGGAC	4 cut(s)	122, 454, 1019, 1729
BsnI	GGCC	4 cut(s)	28, 357, 854, 1536
Bsp1286I	GDGCHC	3 cut(s)	580, 1217, 1380
Bsp143I	GATC	9 cut(s)	208, 436, 802, 983, 1306, 1714, 1876, 2026, 2033
Bsp1720I	GCTNAGC	1 cut(s)	569
Bsp19I	CCATGG	2 cut(s)	849, 1327
Bsp68I	TCGCGA	1 cut(s)	408
BspACI	CCGC	8 cut(s)	25, 354, 388, 424, 542, 965, 1016, 2152
BspANI	GGCC	4 cut(s)	28, 357, 854, 1536
BspCNI	CTCAG	1 cut(s)	2218
BspDI	ATCGAT	1 cut(s)	375
BspFNI	CGCG	1 cut(s)	408
BspHI	TCATGA	1 cut(s)	1252
BspLI	GGNNCC	1 cut(s)	1745
BspMI	ACCTGC	1 cut(s)	1563
BspOI	GCTAGC	1 cut(s)	224
BspPI	GGATC	2 cut(s)	991, 1709
BsrDI	GCAATG	2 cut(s)	960, 1847
BsrFI	RCCGGY	1 cut(s)	1536
BsrI	ACTGG	2 cut(s)	1341, 1518
BssAI	RCCGGY	1 cut(s)	1536
BssECI	CCNNGG	5 cut(s)	105, 503, 504, 849, 1327
BssMI	GATC	9 cut(s)	208, 436, 802, 983, 1306, 1714, 1876, 2026, 2033
BssNAI	GTATAC	1 cut(s)	1578
BssNI	GRCGYC	1 cut(s)	1815
BssSI	CACGAG	2 cut(s)	182, 1976
BssT1I	CCWWGG	2 cut(s)	849, 1327
Bst1107I	GTATAC	1 cut(s)	1578
Bst2BI	CACGAG	2 cut(s)	182, 1976
Bst2UI	CCWGG	3 cut(s)	106, 194, 505
Bst4CI	ACNGT	9 cut(s)	12, 859, 1046, 1095, 1103, 1370, 1470, 1497, 1954
Bst6I	CTCTTC	1 cut(s)	531
BstACI	GRCGYC	1 cut(s)	1815
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	5 cut(s)	36, 222, 694, 1538, 2152
BstDEI	CTNAG	3 cut(s)	569, 1528, 2205
BstDSI	CCRYGG	2 cut(s)	849, 1327
BstENI	CCTNNNNNAGG	1 cut(s)	1559
BstF5I	GGATG	4 cut(s)	90, 514, 1303, 1763
BstFNI	CGCG	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	9 cut(s)	211, 439, 805, 986, 1309, 1717, 1879, 2029, 2036
BstMAI	GTCTC	2 cut(s)	10, 1806
BstMBI	GATC	9 cut(s)	208, 436, 802, 983, 1306, 1714, 1876, 2026, 2033
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 1384, 1955
BstNI	CCWGG	3 cut(s)	106, 194, 505
BstNSI	RCATGY	4 cut(s)	120, 881, 1757, 2048
BstSCI	CCNGG	5 cut(s)	104, 192, 503, 573, 1580
BstSFI	CTRYAG	3 cut(s)	775, 1399, 1953
BstSLI	GKGCMC	1 cut(s)	580
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	5 cut(s)	338, 676, 1105, 1648, 2038
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	1714
BstYI	RGATCY	1 cut(s)	1714
BstZ17I	GTATAC	1 cut(s)	1578
Bsu15I	ATCGAT	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	4 cut(s)	28, 357, 854, 1536
BsuTUI	ATCGAT	1 cut(s)	375
BtgI	CCRYGG	2 cut(s)	849, 1327
BtgZI	GCGATG	1 cut(s)	433
BtsCI	GGATG	4 cut(s)	90, 514, 1303, 1763
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	3 cut(s)	8, 888, 1375
BtuMI	TCGCGA	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	1563
Cac8I	GCNNGC	5 cut(s)	36, 222, 694, 1538, 2152
CciI	TCATGA	1 cut(s)	1252
CfoI	GCGC	1 cut(s)	787
Cfr10I	RCCGGY	1 cut(s)	1536
Cfr13I	GGNCC	3 cut(s)	1018, 1743, 1972
ClaI	ATCGAT	1 cut(s)	375
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	3 cut(s)	238, 550, 1774
CspCI	CAANNNNNGTGG	2 cut(s)	1707, 1742
CviQI	GTAC	3 cut(s)	238, 550, 1774
DdeI	CTNAG	3 cut(s)	569, 1528, 2205
DpnI	GATC	9 cut(s)	210, 438, 804, 985, 1308, 1716, 1878, 2028, 2035
DpnII	GATC	9 cut(s)	208, 436, 802, 983, 1306, 1714, 1876, 2026, 2033
DraI	TTTAAA	1 cut(s)	1207
EaeI	YGGCCR	4 cut(s)	26, 355, 852, 1534
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
EciI	GGCGGA	1 cut(s)	1031
Ecl136II	GAGCTC	1 cut(s)	1378
Eco130I	CCWWGG	2 cut(s)	849, 1327
Eco24I	GRGCYC	1 cut(s)	1380
Eco32I	GATATC	3 cut(s)	379, 619, 1606
Eco47I	GGWCC	3 cut(s)	1018, 1743, 1972
Eco53kI	GAGCTC	1 cut(s)	1378
Eco57I	CTGAAG	3 cut(s)	298, 1112, 2040
EcoICRI	GAGCTC	1 cut(s)	1378
EcoNI	CCTNNNNNAGG	1 cut(s)	1559
EcoO109I	RGGNCCY	1 cut(s)	1743
EcoRI	GAATTC	1 cut(s)	1248
EcoRII	CCWGG	3 cut(s)	104, 192, 503
EcoRV	GATATC	3 cut(s)	379, 619, 1606
EcoT14I	CCWWGG	2 cut(s)	849, 1327
EcoT38I	GRGCYC	1 cut(s)	1380
ErhI	CCWWGG	2 cut(s)	849, 1327
Esp3I	CGTCTC	1 cut(s)	1806
FalI	AAGNNNNNCTT	2 cut(s)	1732, 1764
FaqI	GGGAC	4 cut(s)	122, 454, 1019, 1729
FauI	CCCGC	1 cut(s)	2159
FbaI	TGATCA	2 cut(s)	1876, 2026
FblI	GTMKAC	3 cut(s)	276, 432, 1577
Fnu4HI	GCNGC	8 cut(s)	26, 352, 355, 690, 966, 1119, 1662, 2052
FokI	GGATG	4 cut(s)	77, 521, 1310, 1750
FriOI	GRGCYC	1 cut(s)	1380
Fsp4HI	GCNGC	8 cut(s)	26, 352, 355, 690, 966, 1119, 1662, 2052
FspAI	RTGCGCAY	1 cut(s)	786
FspBI	CTAG	3 cut(s)	125, 221, 491
FspI	TGCGCA	1 cut(s)	786
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	8 cut(s)	26, 352, 355, 690, 966, 1119, 1662, 2052
GsaI	CCCAGC	2 cut(s)	1349, 1444
GsuI	CTGGAG	2 cut(s)	320, 1535
HaeIII	GGCC	4 cut(s)	28, 357, 854, 1536
HapII	CCGG	4 cut(s)	326, 574, 1537, 1582
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	1 cut(s)	787
Hin1I	GRCGYC	1 cut(s)	1815
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HincII	GTYRAC	1 cut(s)	1466
HindII	GTYRAC	1 cut(s)	1466
HindIII	AAGCTT	1 cut(s)	1589
HinfI	GANTC	6 cut(s)	624, 934, 1224, 1598, 2005, 2189
HpaII	CCGG	4 cut(s)	326, 574, 1537, 1582
HphI	GGTGA	7 cut(s)	556, 782, 1301, 1343, 1367, 1946, 2028
Hpy166II	GTNNAC	8 cut(s)	228, 249, 277, 433, 639, 1334, 1466, 1578
Hpy188III	TCNNGA	8 cut(s)	94, 164, 299, 407, 1130, 1253, 1819, 1978
Hpy8I	GTNNAC	8 cut(s)	228, 249, 277, 433, 639, 1334, 1466, 1578
Hpy99I	CGWCG	3 cut(s)	401, 485, 863
HpyAV	CCTTC	6 cut(s)	295, 731, 1277, 1344, 1734, 2054
HpyCH4III	ACNGT	9 cut(s)	12, 859, 1046, 1095, 1103, 1370, 1470, 1497, 1954
HpyCH4IV	ACGT	4 cut(s)	189, 240, 1693, 1815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 1384, 1955
HpyF3I	CTNAG	3 cut(s)	569, 1528, 2205
HpySE526I	ACGT	4 cut(s)	189, 240, 1693, 1815
Hsp92I	GRCGYC	1 cut(s)	1815
HspAI	GCGC	1 cut(s)	785
KroI	GCCGGC	1 cut(s)	1536
KroNI	GCCGGC	1 cut(s)	1538
Ksp22I	TGATCA	2 cut(s)	1876, 2026
Kzo9I	GATC	9 cut(s)	208, 436, 802, 983, 1306, 1714, 1876, 2026, 2033
LmnI	GCTCC	3 cut(s)	1383, 1703, 2099
Lsp1109I	GCAGC	5 cut(s)	338, 676, 1105, 1648, 2038
LweI	GCATC	4 cut(s)	499, 1772, 1918, 1919
MaeI	CTAG	3 cut(s)	125, 221, 491
MaeII	ACGT	4 cut(s)	189, 240, 1693, 1815
MaeIII	GTNAC	8 cut(s)	586, 740, 770, 815, 844, 956, 1370, 2165
MalI	GATC	9 cut(s)	210, 438, 804, 985, 1308, 1716, 1878, 2028, 2035
MboI	GATC	9 cut(s)	208, 436, 802, 983, 1306, 1714, 1876, 2026, 2033
MfeI	CAATTG	1 cut(s)	2180
MflI	RGATCY	1 cut(s)	1714
MhlI	GDGCHC	3 cut(s)	580, 1217, 1380
MlsI	TGGCCA	1 cut(s)	854
MluNI	TGGCCA	1 cut(s)	854
Mox20I	TGGCCA	1 cut(s)	854
MroNI	GCCGGC	1 cut(s)	1536
MroXI	GAANNNNTTC	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	854
MseI	TTAA	4 cut(s)	131, 150, 1074, 1206
Msp20I	TGGCCA	1 cut(s)	854
MspA1I	CMGCKG	2 cut(s)	351, 689
MspI	CCGG	4 cut(s)	326, 574, 1537, 1582
MspR9I	CCNGG	5 cut(s)	106, 194, 505, 575, 1582
MunI	CAATTG	1 cut(s)	2180
MvaI	CCWGG	3 cut(s)	106, 194, 505
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	3 cut(s)	31, 1384, 1955
NaeI	GCCGGC	1 cut(s)	1538
NciI	CCSGG	2 cut(s)	575, 1582
NcoI	CCATGG	2 cut(s)	849, 1327
NdeII	GATC	9 cut(s)	208, 436, 802, 983, 1306, 1714, 1876, 2026, 2033
NgoMIV	GCCGGC	1 cut(s)	1536
NheI	GCTAGC	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	1745
NmuCI	GTSAC	2 cut(s)	770, 1370
NruI	TCGCGA	1 cut(s)	408
NsbI	TGCGCA	1 cut(s)	786
NspI	RCATGY	4 cut(s)	120, 881, 1757, 2048
PagI	TCATGA	1 cut(s)	1252
PasI	CCCWGGG	1 cut(s)	504
PciI	ACATGT	2 cut(s)	116, 2044
PcsI	WCGNNNNNNNCGW	3 cut(s)	381, 405, 1690
PdiI	GCCGGC	1 cut(s)	1538
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	6 cut(s)	624, 934, 1224, 1598, 2005, 2189
PkrI	GCNGC	8 cut(s)	27, 353, 356, 691, 967, 1120, 1663, 2053
Ple19I	CGATCG	1 cut(s)	439
Ppu21I	YACGTR	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	1743
PscI	ACATGT	2 cut(s)	116, 2044
PshBI	ATTAAT	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	1380
Psp1406I	AACGTT	1 cut(s)	1693
Psp5II	RGGWCCY	1 cut(s)	1743
Psp6I	CCWGG	3 cut(s)	104, 192, 503
PspFI	CCCAGC	2 cut(s)	1345, 1440
PspGI	CCWGG	3 cut(s)	104, 192, 503
PspN4I	GGNNCC	1 cut(s)	1745
PspPI	GGNCC	3 cut(s)	1018, 1743, 1972
PspPPI	RGGWCCY	1 cut(s)	1743
PsuI	RGATCY	1 cut(s)	1714
PvuI	CGATCG	1 cut(s)	439
PvuII	CAGCTG	2 cut(s)	351, 689
RruI	TCGCGA	1 cut(s)	408
RsaI	GTAC	3 cut(s)	239, 551, 1775
RsaNI	GTAC	3 cut(s)	238, 550, 1774
SacI	GAGCTC	1 cut(s)	1380
SaqAI	TTAA	4 cut(s)	131, 150, 1074, 1206
SatI	GCNGC	8 cut(s)	26, 352, 355, 690, 966, 1119, 1662, 2052
Sau3AI	GATC	9 cut(s)	208, 436, 802, 983, 1306, 1714, 1876, 2026, 2033
Sau96I	GGNCC	3 cut(s)	1018, 1743, 1972
ScrFI	CCNGG	5 cut(s)	106, 194, 505, 575, 1582
SduI	GDGCHC	3 cut(s)	580, 1217, 1380
SfaNI	GCATC	4 cut(s)	499, 1772, 1918, 1919
SfcI	CTRYAG	3 cut(s)	775, 1399, 1953
SinI	GGWCC	3 cut(s)	1018, 1743, 1972
SmlI	CTYRAG	4 cut(s)	464, 1382, 1559, 2232
SmoI	CTYRAG	4 cut(s)	464, 1382, 1559, 2232
SsiI	CCGC	8 cut(s)	25, 354, 388, 424, 542, 965, 1016, 2152
SspMI	CTAG	3 cut(s)	125, 221, 491
SstI	GAGCTC	1 cut(s)	1380
StyD4I	CCNGG	5 cut(s)	104, 192, 503, 573, 1580
StyI	CCWWGG	2 cut(s)	849, 1327
TaaI	ACNGT	9 cut(s)	12, 859, 1046, 1095, 1103, 1370, 1470, 1497, 1954
TaiI	ACGT	4 cut(s)	192, 243, 1696, 1818
TaqI	TCGA	6 cut(s)	202, 345, 375, 483, 1684, 2187
TauI	GCSGC	3 cut(s)	28, 357, 968
TfiI	GAWTC	6 cut(s)	624, 934, 1224, 1598, 2005, 2189
Tru1I	TTAA	4 cut(s)	131, 150, 1074, 1206
Tru9I	TTAA	4 cut(s)	131, 150, 1074, 1206
TscAI	CASTG	3 cut(s)	15, 888, 1375
TseFI	GTSAC	2 cut(s)	770, 1370
TseI	GCWGC	5 cut(s)	351, 689, 1118, 1661, 2051
Tsp45I	GTSAC	2 cut(s)	770, 1370
TspGWI	ACGGA	2 cut(s)	595, 605
TspRI	CASTG	3 cut(s)	15, 888, 1375
VpaK11BI	GGWCC	3 cut(s)	1018, 1743, 1972
VspI	ATTAAT	1 cut(s)	131
XagI	CCTNNNNNAGG	1 cut(s)	1559
XapI	RAATTY	1 cut(s)	1248
XceI	RCATGY	4 cut(s)	120, 881, 1757, 2048
XmiI	GTMKAC	3 cut(s)	276, 432, 1577
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	3 cut(s)	125, 221, 491
ZraI	GACGTC	1 cut(s)	1816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.