Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000092.1

Orthogroup ID

OG0012865

Physical Location & Seq

Genomic Coordinates Reverse (-)

4133 .. 7235

Gene Structure 3103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000092.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atgaatgatgaacccacagatagcaagagccttgtgattcaaatcacaccaccatcacgatcccagccctggacctctccggccctcgatcggagccgttttgaggtcgcggctgctgccgagagctccggcgagaccgccgagccgaagagcagtttgttcaagactctggagctcgggtcgttgttcggcctctggtacctgttcaacatctacttcaacatctataacaagcaggtcttgaaggtgttcccgtacccagcaactgttactggaatacaatttgctgttgggactgttgttgttctgctcatgtggggtttgaatctctacaagaagccaaaaatcagcggtgcacagctagcagcaattctgccactggccattgttcacactttgggtaacctttttactaatatgagtcttgggagagtggctgtatcattcactcacacgatcaaggctagtgagccctttttctcagtaatcctctctgccatgtttctcggtgagatacctactccttgggtggttgcttccctgattccaattgttggtggagtgggactggcatcagttactgaggcctcatttaactgggctggattctggagtgctatggcttccaatttgataaaccaatctcgcaatgtcctcagcaaaaaggtcatggttaagaatgaggaatctatggacaacattacactcttctcgataataacaatcatgtcctttttcttgttgacccctgtggccatcttcttggaaggggtgaaatttactccagcggccatgacatctgctggattgggggttaaacaagtatatactaggtctcttattgctgcactctgcttccacgcatatcagcaggtttcgtatatgatattgcaaagggtatcacctgttactcactctgtcggtaattgtgtcaagcgagtggtggttatagtgagctctgttatcttcttcaaaacacctgtctcacctattaattctcttggaactgggattgcacttgctggagttttcttgtattcaagagtgaagcgcatcaaggcaaagccgaagactgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009670 GO:0009941 GO:0015075 GO:0015120 GO:0015121 GO:0015144 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

359

Amino Acids

39.03

Weight (kDa)

9.8

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G33320
fragaria_vesca	FvH4_5g05430
malus_domestica	MD06G1172800.v1.1 MD14G1178800.v1.1
prunus_persica	Prupe.5G172100_v2.0.a1 Prupe.5G172100_v2.0.a1
pyrus_communis	pycom06g15390 pycom14g14900
rosa_chinensis	RchiOBHm_Chr7g0193401
rosa_laevigata	RLG00000004271
rosa_multiflora	Rmu_ssc0000092.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262130
rosa_rugosa	Rorug07G0009300
rosa_samantha	Rh7AG135800 Rh7BG136100 Rh7CG139700 Rh7DG137500
rosa_wichuraiana	Rw7G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	226, 862
Acc65I	GGTACC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	198
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccII	CGCG	1 cut(s)	110
AciI	CCGC	4 cut(s)	110, 138, 351, 788
AclWI	GGATC	1 cut(s)	54
AcoI	YGGCCR	3 cut(s)	381, 753, 789
AcsI	RAATTY	1 cut(s)	776
AfaI	GTAC	2 cut(s)	200, 257
AfiI	CCNNNNNNNGG	4 cut(s)	69, 90, 103, 554
AgsI	TTSAA	8 cut(s)	41, 163, 208, 220, 244, 325, 973, 1041
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	4 cut(s)	126, 175, 361, 957
AluI	AGCT	4 cut(s)	126, 175, 361, 957
Alw21I	GWGCWC	4 cut(s)	128, 177, 358, 959
Alw26I	GTCTC	3 cut(s)	128, 840, 988
Alw44I	GTGCAC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	54
AlwNI	CAGNNNCTG	2 cut(s)	266, 581
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	6 cut(s)	81, 190, 381, 585, 753, 789
ApaLI	GTGCAC	1 cut(s)	354
ApeKI	GCWGC	4 cut(s)	113, 116, 365, 845
ApoI	RAATTY	1 cut(s)	776
ArsI	GACNNNNNNTTYG	2 cut(s)	966, 998
AseI	ATTAAT	1 cut(s)	993
Asp700I	GAANNNNTTC	1 cut(s)	248
Asp718I	GGTACC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	1053
AspS9I	GGNCC	2 cut(s)	72, 82
AsuHPI	GGTGA	4 cut(s)	521, 784, 894, 978
AsuNHI	GCTAGC	1 cut(s)	361
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	358
BalI	TGGCCA	2 cut(s)	383, 755
BanI	GGYRCC	1 cut(s)	198
BanII	GRGCYC	4 cut(s)	128, 177, 474, 959
BbsI	GAAGAC	1 cut(s)	1076
Bbv12I	GWGCWC	4 cut(s)	128, 177, 358, 959
BbvCI	CCTCAGC	1 cut(s)	656
BbvI	GCAGC	4 cut(s)	100, 103, 377, 832
BccI	CCATC	2 cut(s)	61, 764
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	3 cut(s)	128, 840, 988
BfaI	CTAG	3 cut(s)	362, 465, 831
BfuAI	ACCTGC	2 cut(s)	226, 862
BisI	GCNGC	6 cut(s)	111, 114, 117, 366, 789, 846
BlsI	GCNGC	6 cut(s)	112, 115, 118, 367, 790, 847
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	72, 82
BmiI	GGNNCC	2 cut(s)	95, 200
BmrFI	CCNGG	1 cut(s)	70
BmrI	ACTGGG	2 cut(s)	607, 1017
BmsI	GCATC	2 cut(s)	581, 1062
BmtI	GCTAGC	1 cut(s)	365
BmuI	ACTGGG	2 cut(s)	607, 1017
BpiI	GAAGAC	1 cut(s)	1076
BpmI	CTGGAG	4 cut(s)	191, 631, 768, 1044
Bpu10I	CCTNAGC	1 cut(s)	656
BsaBI	GATNNNNATC	1 cut(s)	41
BsaI	GGTCTC	2 cut(s)	128, 840
BsaJI	CCNNGG	2 cut(s)	68, 524
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 90, 103, 554
Bse1I	ACTGG	5 cut(s)	277, 384, 573, 602, 1012
Bse3DI	GCAATG	1 cut(s)	655
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	68, 524
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	4 cut(s)	69, 90, 103, 554
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	3 cut(s)	495, 573, 670
BseNI	ACTGG	5 cut(s)	277, 384, 573, 602, 1012
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	4 cut(s)	100, 103, 377, 832
BseYI	CCCAGC	2 cut(s)	63, 259
BsgI	GTGCAG	1 cut(s)	831
Bsh1236I	CGCG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	6 cut(s)	83, 192, 383, 587, 755, 791
BshNI	GGYRCC	1 cut(s)	198
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	4 cut(s)	128, 177, 358, 959
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	2 cut(s)	80, 129
BslFI	GGGAC	2 cut(s)	307, 579
BslI	CCNNNNNNNGG	4 cut(s)	69, 90, 103, 554
BsmAI	GTCTC	3 cut(s)	128, 840, 988
BsmFI	GGGAC	2 cut(s)	307, 579
BsnI	GGCC	6 cut(s)	83, 192, 383, 587, 755, 791
Bso31I	GGTCTC	2 cut(s)	128, 840
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	5 cut(s)	128, 177, 358, 474, 959
Bsp143I	GATC	3 cut(s)	59, 88, 456
BspACI	CCGC	4 cut(s)	110, 138, 351, 788
BspANI	GGCC	6 cut(s)	83, 192, 383, 587, 755, 791
BspCNI	CTCAG	3 cut(s)	494, 574, 669
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	95, 200
BspMI	ACCTGC	2 cut(s)	226, 862
BspOI	GCTAGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	54
BspQI	GCTCTTC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	198
BspTNI	GGTCTC	2 cut(s)	128, 840
BsrDI	GCAATG	1 cut(s)	655
BsrI	ACTGG	5 cut(s)	277, 384, 573, 602, 1012
BssECI	CCNNGG	2 cut(s)	68, 524
BssMI	GATC	3 cut(s)	59, 88, 456
BssT1I	CCWWGG	1 cut(s)	524
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	268, 298
Bst6I	CTCTTC	2 cut(s)	143, 713
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	3 cut(s)	481, 582, 656
BstEII	GGTNACC	1 cut(s)	401
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	1053
BstKTI	GATC	3 cut(s)	62, 91, 459
BstMAI	GTCTC	3 cut(s)	128, 840, 988
BstMBI	GATC	3 cut(s)	59, 88, 456
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 362
BstNI	CCWGG	1 cut(s)	70
BstPI	GGTNACC	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	358
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	4 cut(s)	100, 103, 377, 832
BstV2I	GAAGAC	1 cut(s)	1076
BstXI	CCANNNNNNTGG	1 cut(s)	763
BsuRI	GGCC	6 cut(s)	83, 192, 383, 587, 755, 791
BtsIMutI	CAGTG	1 cut(s)	377
BveI	ACCTGC	2 cut(s)	226, 862
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	2 cut(s)	266, 581
CfoI	GCGC	1 cut(s)	1053
Cfr13I	GGNCC	2 cut(s)	72, 82
Csp6I	GTAC	2 cut(s)	199, 256
CviAII	CATG	5 cut(s)	313, 499, 670, 727, 793
CviQI	GTAC	2 cut(s)	199, 256
DdeI	CTNAG	3 cut(s)	481, 582, 656
DpnI	GATC	3 cut(s)	61, 90, 458
DpnII	GATC	3 cut(s)	59, 88, 456
EaeI	YGGCCR	3 cut(s)	381, 753, 789
Eam1104I	CTCTTC	2 cut(s)	143, 713
EarI	CTCTTC	2 cut(s)	143, 713
Ecl136II	GAGCTC	3 cut(s)	126, 175, 957
Eco130I	CCWWGG	1 cut(s)	524
Eco147I	AGGCCT	1 cut(s)	587
Eco24I	GRGCYC	4 cut(s)	128, 177, 474, 959
Eco31I	GGTCTC	2 cut(s)	128, 840
Eco47I	GGWCC	1 cut(s)	72
Eco53kI	GAGCTC	3 cut(s)	126, 175, 957
Eco88I	CYCGRG	1 cut(s)	176
Eco91I	GGTNACC	1 cut(s)	401
EcoICRI	GAGCTC	3 cut(s)	126, 175, 957
EcoO65I	GGTNACC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	524
EcoT38I	GRGCYC	4 cut(s)	128, 177, 474, 959
ErhI	CCWWGG	1 cut(s)	524
FaeI	CATG	5 cut(s)	316, 502, 673, 730, 796
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	2 cut(s)	307, 579
FatI	CATG	5 cut(s)	312, 498, 669, 726, 792
Fnu4HI	GCNGC	6 cut(s)	111, 114, 117, 366, 789, 846
FriOI	GRGCYC	4 cut(s)	128, 177, 474, 959
Fsp4HI	GCNGC	6 cut(s)	111, 114, 117, 366, 789, 846
FspBI	CTAG	3 cut(s)	362, 465, 831
GlaI	GCGC	1 cut(s)	1052
GluI	GCNGC	6 cut(s)	111, 114, 117, 366, 789, 846
GsaI	CCCAGC	2 cut(s)	67, 263
GsuI	CTGGAG	4 cut(s)	191, 631, 768, 1044
HaeIII	GGCC	6 cut(s)	83, 192, 383, 587, 755, 791
HapII	CCGG	2 cut(s)	80, 129
HhaI	GCGC	1 cut(s)	1053
Hin1II	CATG	5 cut(s)	316, 502, 673, 730, 796
Hin6I	GCGC	1 cut(s)	1051
HinP1I	GCGC	1 cut(s)	1051
HincII	GTYRAC	1 cut(s)	744
HindII	GTYRAC	1 cut(s)	744
HinfI	GANTC	7 cut(s)	37, 166, 325, 421, 544, 606, 686
HpaII	CCGG	2 cut(s)	80, 129
HphI	GGTGA	4 cut(s)	521, 784, 894, 978
Hpy166II	GTNNAC	3 cut(s)	356, 391, 744
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	7 cut(s)	57, 163, 170, 241, 610, 712, 1041
Hpy8I	GTNNAC	3 cut(s)	356, 391, 744
HpyAV	CCTTC	2 cut(s)	238, 761
HpyCH4III	ACNGT	2 cut(s)	268, 298
HpyCH4V	TGCA	4 cut(s)	356, 848, 892, 1016
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 362
HpyF3I	CTNAG	3 cut(s)	481, 582, 656
Hsp92II	CATG	5 cut(s)	316, 502, 673, 730, 796
HspAI	GCGC	1 cut(s)	1051
KpnI	GGTACC	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	59, 88, 456
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	3 cut(s)	93, 131, 172
Lsp1109I	GCAGC	4 cut(s)	100, 103, 377, 832
LweI	GCATC	2 cut(s)	581, 1062
MaeI	CTAG	3 cut(s)	362, 465, 831
MaeIII	GTNAC	4 cut(s)	268, 401, 577, 907
MalI	GATC	3 cut(s)	61, 90, 458
MboI	GATC	3 cut(s)	59, 88, 456
MboII	GAAGA	5 cut(s)	160, 700, 751, 958, 961
MfeI	CAATTG	1 cut(s)	549
MhlI	GDGCHC	5 cut(s)	128, 177, 358, 474, 959
MlsI	TGGCCA	2 cut(s)	383, 755
MluCI	AATT	7 cut(s)	281, 369, 549, 628, 776, 925, 994
MluNI	TGGCCA	2 cut(s)	383, 755
MlyI	GAGTC	2 cut(s)	160, 430
MnlI	CCTC	9 cut(s)	85, 95, 97, 203, 500, 577, 598, 665, 676
Mox20I	TGGCCA	2 cut(s)	383, 755
MroXI	GAANNNNTTC	1 cut(s)	248
MscI	TGGCCA	2 cut(s)	383, 755
MseI	TTAA	4 cut(s)	594, 675, 816, 993
Msp20I	TGGCCA	2 cut(s)	383, 755
MspA1I	CMGCKG	2 cut(s)	351, 788
MspI	CCGG	2 cut(s)	80, 129
MspR9I	CCNGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	116, 362
NdeII	GATC	3 cut(s)	59, 88, 456
NheI	GCTAGC	1 cut(s)	361
NlaIII	CATG	5 cut(s)	316, 502, 673, 730, 796
NlaIV	GGNNCC	2 cut(s)	95, 200
NmeAIII	GCCGAG	2 cut(s)	145, 166
PceI	AGGCCT	1 cut(s)	587
PciSI	GCTCTTC	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	5 cut(s)	37, 325, 544, 606, 686
PflMI	CCANNNNNTGG	1 cut(s)	554
PkrI	GCNGC	6 cut(s)	112, 115, 118, 367, 790, 847
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	2 cut(s)	160, 429
PpsI	GAGTC	2 cut(s)	160, 429
PshBI	ATTAAT	1 cut(s)	993
Psp124BI	GAGCTC	3 cut(s)	128, 177, 959
Psp6I	CCWGG	1 cut(s)	68
PspEI	GGTNACC	1 cut(s)	401
PspFI	CCCAGC	2 cut(s)	63, 259
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	95, 200
PspPI	GGNCC	2 cut(s)	72, 82
PstNI	CAGNNNCTG	2 cut(s)	266, 581
PvuI	CGATCG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	200, 257
RsaNI	GTAC	2 cut(s)	199, 256
SacI	GAGCTC	3 cut(s)	128, 177, 959
SapI	GCTCTTC	1 cut(s)	143
SaqAI	TTAA	4 cut(s)	594, 675, 816, 993
SatI	GCNGC	6 cut(s)	111, 114, 117, 366, 789, 846
Sau3AI	GATC	3 cut(s)	59, 88, 456
Sau96I	GGNCC	2 cut(s)	72, 82
SchI	GAGTC	2 cut(s)	160, 430
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	5 cut(s)	128, 177, 358, 474, 959
SfaNI	GCATC	2 cut(s)	581, 1062
SinI	GGWCC	1 cut(s)	72
Sse9I	AATT	7 cut(s)	281, 369, 549, 628, 776, 925, 994
SseBI	AGGCCT	1 cut(s)	587
SsiI	CCGC	4 cut(s)	110, 138, 351, 788
SspMI	CTAG	3 cut(s)	362, 465, 831
SstI	GAGCTC	3 cut(s)	128, 177, 959
StuI	AGGCCT	1 cut(s)	587
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	524
TaaI	ACNGT	2 cut(s)	268, 298
TaqI	TCGA	2 cut(s)	87, 713
TasI	AATT	7 cut(s)	281, 369, 549, 628, 776, 925, 994
TauI	GCSGC	2 cut(s)	113, 791
TfiI	GAWTC	5 cut(s)	37, 325, 544, 606, 686
Tru1I	TTAA	4 cut(s)	594, 675, 816, 993
Tru9I	TTAA	4 cut(s)	594, 675, 816, 993
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	4 cut(s)	113, 116, 365, 845
TspDTI	ATGAA	2 cut(s)	17, 24
TspRI	CASTG	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	554
VneI	GTGCAC	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	72
VspI	ATTAAT	1 cut(s)	993
XapI	RAATTY	1 cut(s)	776
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	3 cut(s)	362, 465, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.