Rroxscaffold_3G00262130

Triose phosphate phosphate translocator, non-green plastid

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
56221525 .. 56225282
3758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262130.1

Sequence Viewer

Length: 903 bp
ATGCAGACCGCCGCCTTCACTCTCACGCCGTCTCTCCCTCTCCTCAAGTCTCGCCGCCTCTCCGCCCAAGCCCCCACCCTCAGATTCTCTCCCACACGTGTCTCCGCCTCCCTGAAGCCTGGCACCGCTCTCACCTCCTCCACCAATGACGCCCTCTCCGCCTCTCTCTCCCGCCGATCCTGGTCCGTCTCCTCCGATGACTTCAAGCTCAGGCCCTGGACTTCTCCGGCCCTCGATCGGAGCCGCTTCGAGGTCGCGGCTACTGCCGAGAGCTCCGGCGAGACCGCCGAGCCGAAGAGCAGCTTGTTCAAGACTCTCGAGCTCGGGTCGTTGTTCGGCCTCTGGTACCTGTTCAACATCTACTTCAATATCTATAACAAGCAGGTCTTGAAGGTGTTCCCTTACCCGGCAACTGTTACCGGTATACAATTTGCTGTTGGGACTGTTGTTGTTCTGCTCATGTGGGGTTTGAATCTCTACAAGAAGCCGAAAATCAGCGGTGCACAGGAATCTATGGACAACATTACACTCTTCTCGATAATAACAATCATGTCCTTTTTCTTGTTGACTCCTGTGGCCATCTTCTTGGAAGGGGTGAAATTTACTCCAGCAGCCATGACATCTGCTGGATTGGGGGTTAAACAAGTATATACTAGGTCTCTTATTGCTGCACTCTGCTTCCACGCATATCAGCAGGTTTCATATATGATATTGCAAAGGGTATCACCTGTTACTCACTCTGTTGGCAATTGTGTCAAGCGAGTGGTGGTTATCGTGAGCTCTGTTATCTTCTTCAAAACACCTGTCTCACCTATTAACTCTCTTGGAACTGGGATTGCACTTGCTGGAGTTTTCTTGTATTCAAGGGTGAAGCGCATCAAGGCAAAGCCGAAGACTGCTTGA

Protein Analysis

300

Amino Acids

32.76

Weight (kDa)

10.22

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 107 - 167 1.5e-19 Triose-phosphate Transporter family
TPT PF03151 169 - 288 1.5e-45 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012865)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 373, 685
Acc65I GGTACC 1 cut(s) 345
AccB1I GGYRCC 2 cut(s) 122, 345
AccBSI CCGCTC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 424
AccII CGCG 1 cut(s) 257
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 576
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 1 cut(s) 134
AcvI CACGTG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 3 cut(s) 237, 250, 406
AflIII ACRYGT 2 cut(s) 95, 97
AgeI ACCGGT 1 cut(s) 419
AgsI TTSAA 8 cut(s) 205, 310, 355, 367, 391, 472, 796, 864
AjnI CCWGG 3 cut(s) 118, 179, 215
AluBI AGCT 5 cut(s) 208, 273, 303, 322, 780
AluI AGCT 5 cut(s) 208, 273, 303, 322, 780
Alw21I GWGCWC 4 cut(s) 275, 324, 505, 782
Alw26I GTCTC 7 cut(s) 36, 54, 106, 193, 275, 663, 811
Alw44I GTGCAC 1 cut(s) 501
AlwI GGATC 1 cut(s) 171
AlwNI CAGNNNCTG 1 cut(s) 216
Ama87I CYCGRG 2 cut(s) 317, 323
AoxI GGCC 4 cut(s) 212, 228, 337, 576
ApaLI GTGCAC 1 cut(s) 501
ApeKI GCWGC 3 cut(s) 300, 611, 668
ApoI RAATTY 1 cut(s) 599
ArsI GACNNNNNNTTYG 2 cut(s) 789, 821
AsiGI ACCGGT 1 cut(s) 419
Asp700I GAANNNNTTC 1 cut(s) 395
Asp718I GGTACC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 876
AspS9I GGNCC 3 cut(s) 183, 213, 229
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 5 cut(s) 124, 607, 717, 801, 880
AvaI CYCGRG 2 cut(s) 317, 323
AvaII GGWCC 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 505
BalI TGGCCA 1 cut(s) 578
BanI GGYRCC 2 cut(s) 122, 345
BanII GRGCYC 3 cut(s) 275, 324, 782
BbrPI CACGTG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 899
Bbv12I GWGCWC 4 cut(s) 275, 324, 505, 782
BbvI GCAGC 3 cut(s) 312, 623, 655
BccI CCATC 1 cut(s) 587
BceAI ACGGC 1 cut(s) 13
BciT130I CCWGG 3 cut(s) 120, 181, 217
BcnI CCSGG 1 cut(s) 407
BcoDI GTCTC 7 cut(s) 36, 54, 106, 193, 275, 663, 811
BfaI CTAG 1 cut(s) 654
BfuAI ACCTGC 2 cut(s) 373, 685
BisI GCNGC 7 cut(s) 12, 55, 244, 258, 301, 612, 669
BlsI GCNGC 7 cut(s) 13, 56, 245, 259, 302, 613, 670
Bme1390I CCNGG 4 cut(s) 120, 181, 217, 407
Bme18I GGWCC 1 cut(s) 183
BmeT110I CYCGRG 2 cut(s) 317, 323
BmgT120I GGNCC 3 cut(s) 183, 213, 229
BmiI GGNNCC 3 cut(s) 124, 242, 347
BmrFI CCNGG 4 cut(s) 120, 181, 217, 407
BmrI ACTGGG 1 cut(s) 840
BmsI GCATC 1 cut(s) 885
BmuI ACTGGG 1 cut(s) 840
BpiI GAAGAC 1 cut(s) 899
BpmI CTGGAG 2 cut(s) 591, 867
Bpu10I CCTNAGC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 407
BsaAI YACGTR 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 2 cut(s) 275, 663
BsaJI CCNNGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 419
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 250, 406
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 1 cut(s) 835
BseBI CCWGG 3 cut(s) 120, 181, 217
BseDI CCNNGG 1 cut(s) 215
BseLI CCNNNNNNNGG 3 cut(s) 237, 250, 406
BseMII CTCAG 2 cut(s) 94, 223
BseNI ACTGG 1 cut(s) 835
BseRI GAGGAG 3 cut(s) 32, 127, 181
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 3 cut(s) 312, 623, 655
BsgI GTGCAG 1 cut(s) 654
Bsh1236I CGCG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 4 cut(s) 214, 230, 339, 578
BshNI GGYRCC 2 cut(s) 122, 345
BshTI ACCGGT 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 4 cut(s) 275, 324, 505, 782
BsiHKCI CYCGRG 2 cut(s) 317, 323
BsiSI CCGG 4 cut(s) 227, 276, 407, 420
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 3 cut(s) 237, 250, 406
BsmAI GTCTC 7 cut(s) 36, 54, 106, 193, 275, 663, 811
BsmBI CGTCTC 2 cut(s) 36, 193
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 4 cut(s) 214, 230, 339, 578
Bso31I GGTCTC 2 cut(s) 275, 663
BsoBI CYCGRG 2 cut(s) 317, 323
Bsp1286I GDGCHC 4 cut(s) 275, 324, 505, 782
Bsp143I GATC 2 cut(s) 176, 235
BspANI GGCC 4 cut(s) 214, 230, 339, 578
BspCNI CTCAG 2 cut(s) 93, 222
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 3 cut(s) 124, 242, 347
BspMI ACCTGC 2 cut(s) 373, 685
BspPI GGATC 1 cut(s) 171
BspQI GCTCTTC 1 cut(s) 290
BspT107I GGYRCC 2 cut(s) 122, 345
BspTNI GGTCTC 2 cut(s) 275, 663
BsrBI CCGCTC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 419
BsrI ACTGG 1 cut(s) 835
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 2 cut(s) 176, 235
BssNAI GTATAC 1 cut(s) 425
BssNI GRCGYC 1 cut(s) 150
Bst1107I GTATAC 1 cut(s) 425
Bst2UI CCWGG 3 cut(s) 120, 181, 217
Bst4CI ACNGT 2 cut(s) 415, 445
Bst6I CTCTTC 2 cut(s) 290, 536
BstACI GRCGYC 1 cut(s) 150
BstBAI YACGTR 1 cut(s) 98
BstDEI CTNAG 2 cut(s) 80, 209
BstFNI CGCG 1 cut(s) 257
BstHHI GCGC 1 cut(s) 876
BstKTI GATC 2 cut(s) 179, 238
BstMAI GTCTC 7 cut(s) 36, 54, 106, 193, 275, 663, 811
BstMBI GATC 2 cut(s) 176, 235
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 158, 263
BstNI CCWGG 3 cut(s) 120, 181, 217
BstSCI CCNGG 4 cut(s) 118, 179, 215, 405
BstSLI GKGCMC 1 cut(s) 505
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 3 cut(s) 312, 623, 655
BstV2I GAAGAC 1 cut(s) 899
BstXI CCANNNNNNTGG 1 cut(s) 586
BstZ17I GTATAC 1 cut(s) 425
BsuRI GGCC 4 cut(s) 214, 230, 339, 578
BveI ACCTGC 2 cut(s) 373, 685
CaiI CAGNNNCTG 1 cut(s) 216
CfoI GCGC 1 cut(s) 876
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 3 cut(s) 183, 213, 229
CseI GACGC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 346
CspAI ACCGGT 1 cut(s) 419
CviAII CATG 3 cut(s) 460, 550, 616
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 2 cut(s) 80, 209
DpnI GATC 2 cut(s) 178, 237
DpnII GATC 2 cut(s) 176, 235
EaeI YGGCCR 1 cut(s) 576
Eam1104I CTCTTC 2 cut(s) 290, 536
EarI CTCTTC 2 cut(s) 290, 536
EciI GGCGGA 3 cut(s) 52, 94, 148
Ecl136II GAGCTC 3 cut(s) 273, 322, 780
Eco24I GRGCYC 3 cut(s) 275, 324, 782
Eco31I GGTCTC 2 cut(s) 275, 663
Eco47I GGWCC 1 cut(s) 183
Eco53kI GAGCTC 3 cut(s) 273, 322, 780
Eco57I CTGAAG 1 cut(s) 134
Eco72I CACGTG 1 cut(s) 98
Eco88I CYCGRG 2 cut(s) 317, 323
EcoICRI GAGCTC 3 cut(s) 273, 322, 780
EcoO109I RGGNCCY 1 cut(s) 213
EcoRII CCWGG 3 cut(s) 118, 179, 215
EcoT38I GRGCYC 3 cut(s) 275, 324, 782
Esp3I CGTCTC 2 cut(s) 36, 193
FaeI CATG 3 cut(s) 463, 553, 619
FalI AAGNNNNNCTT 4 cut(s) 287, 319, 371, 403
FaqI GGGAC 1 cut(s) 454
FatI CATG 3 cut(s) 459, 549, 615
FauI CCCGC 1 cut(s) 179
FblI GTMKAC 1 cut(s) 424
Fnu4HI GCNGC 7 cut(s) 12, 55, 244, 258, 301, 612, 669
FriOI GRGCYC 3 cut(s) 275, 324, 782
Fsp4HI GCNGC 7 cut(s) 12, 55, 244, 258, 301, 612, 669
FspBI CTAG 1 cut(s) 654
GlaI GCGC 1 cut(s) 875
GluI GCNGC 7 cut(s) 12, 55, 244, 258, 301, 612, 669
GsuI CTGGAG 2 cut(s) 591, 867
HaeIII GGCC 4 cut(s) 214, 230, 339, 578
HapII CCGG 4 cut(s) 227, 276, 407, 420
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 876
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 3 cut(s) 463, 553, 619
Hin6I GCGC 1 cut(s) 874
HinP1I GCGC 1 cut(s) 874
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HinfI GANTC 5 cut(s) 84, 313, 472, 509, 568
HpaII CCGG 4 cut(s) 227, 276, 407, 420
HphI GGTGA 5 cut(s) 124, 607, 717, 801, 880
Hpy166II GTNNAC 3 cut(s) 425, 503, 567
Hpy188I TCNGA 3 cut(s) 83, 196, 240
Hpy188III TCNNGA 5 cut(s) 310, 317, 388, 535, 775
Hpy8I GTNNAC 3 cut(s) 425, 503, 567
HpyAV CCTTC 3 cut(s) 25, 385, 584
HpyCH4III ACNGT 2 cut(s) 415, 445
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 4, 503, 671, 715, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 263
HpyF3I CTNAG 2 cut(s) 80, 209
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 3 cut(s) 463, 553, 619
HspAI GCGC 1 cut(s) 874
KpnI GGTACC 1 cut(s) 349
Kzo9I GATC 2 cut(s) 176, 235
LguI GCTCTTC 1 cut(s) 290
LmnI GCTCC 2 cut(s) 240, 278
Lsp1109I GCAGC 3 cut(s) 312, 623, 655
LweI GCATC 1 cut(s) 885
MaeI CTAG 1 cut(s) 654
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 2 cut(s) 415, 730
MalI GATC 2 cut(s) 178, 237
MbiI CCGCTC 1 cut(s) 128
MboI GATC 2 cut(s) 176, 235
MboII GAAGA 5 cut(s) 307, 523, 574, 781, 784
MfeI CAATTG 1 cut(s) 748
MhlI GDGCHC 4 cut(s) 275, 324, 505, 782
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 3 cut(s) 428, 599, 748
MluNI TGGCCA 1 cut(s) 578
MlyI GAGTC 2 cut(s) 307, 562
Mox20I TGGCCA 1 cut(s) 578
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 578
MseI TTAA 2 cut(s) 639, 816
Msp20I TGGCCA 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 498
MspI CCGG 4 cut(s) 227, 276, 407, 420
MspR9I CCNGG 4 cut(s) 120, 181, 217, 407
MunI CAATTG 1 cut(s) 748
MvaI CCWGG 3 cut(s) 120, 181, 217
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 158, 263
NciI CCSGG 1 cut(s) 407
NdeII GATC 2 cut(s) 176, 235
NlaIII CATG 3 cut(s) 463, 553, 619
NlaIV GGNNCC 3 cut(s) 124, 242, 347
NmeAIII GCCGAG 2 cut(s) 292, 313
PaeR7I CTCGAG 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 290
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 3 cut(s) 84, 472, 509
PinAI ACCGGT 1 cut(s) 419
PkrI GCNGC 7 cut(s) 13, 56, 245, 259, 302, 613, 670
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 2 cut(s) 307, 562
PmaCI CACGTG 1 cut(s) 98
PmlI CACGTG 1 cut(s) 98
PpsI GAGTC 2 cut(s) 307, 562
Ppu21I YACGTR 1 cut(s) 98
Psp124BI GAGCTC 3 cut(s) 275, 324, 782
Psp6I CCWGG 3 cut(s) 118, 179, 215
PspCI CACGTG 1 cut(s) 98
PspGI CCWGG 3 cut(s) 118, 179, 215
PspN4I GGNNCC 3 cut(s) 124, 242, 347
PspPI GGNCC 3 cut(s) 183, 213, 229
PstNI CAGNNNCTG 1 cut(s) 216
PvuI CGATCG 1 cut(s) 238
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SacI GAGCTC 3 cut(s) 275, 324, 782
SapI GCTCTTC 1 cut(s) 290
SaqAI TTAA 2 cut(s) 639, 816
SatI GCNGC 7 cut(s) 12, 55, 244, 258, 301, 612, 669
Sau3AI GATC 2 cut(s) 176, 235
Sau96I GGNCC 3 cut(s) 183, 213, 229
SchI GAGTC 2 cut(s) 307, 562
ScrFI CCNGG 4 cut(s) 120, 181, 217, 407
SduI GDGCHC 4 cut(s) 275, 324, 505, 782
SfaNI GCATC 1 cut(s) 885
Sfr274I CTCGAG 1 cut(s) 317
SinI GGWCC 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 317
SmlI CTYRAG 2 cut(s) 44, 317
SmoI CTYRAG 2 cut(s) 44, 317
Sse9I AATT 3 cut(s) 428, 599, 748
SspMI CTAG 1 cut(s) 654
SstI GAGCTC 3 cut(s) 275, 324, 782
StyD4I CCNGG 4 cut(s) 118, 179, 215, 405
TaaI ACNGT 2 cut(s) 415, 445
TaiI ACGT 1 cut(s) 100
TaqI TCGA 4 cut(s) 234, 249, 318, 536
TasI AATT 3 cut(s) 428, 599, 748
TauI GCSGC 4 cut(s) 14, 57, 246, 260
TfiI GAWTC 3 cut(s) 84, 472, 509
Tru1I TTAA 2 cut(s) 639, 816
Tru9I TTAA 2 cut(s) 639, 816
TseI GCWGC 3 cut(s) 300, 611, 668
TspDTI ATGAA 1 cut(s) 690
TspGWI ACGGA 1 cut(s) 175
VneI GTGCAC 1 cut(s) 501
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 1 cut(s) 599
XhoI CTCGAG 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 424
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.