FvH4_5g05430

Triose phosphate phosphate translocator, non-green plastid

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
3189157 .. 3192979
3823 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05430.t1

Sequence Viewer

Length: 1230 bp
ATGCAGACCGCCGCCTTCACTCTCACGCCGTCCCTCCCTCTCCTCAAGTCCCGCCGCCTCTCCGCTCAGTCCTCCACCCTCAGATTCGCTCCCACACGCGTCTCCGCCTCCCTCAAGCCTAACACCGCCGCGCTCAACTGCTCCGCCAATGACGACTCCTCCCTCCTCTCCCGCCGATCCTGGTCCGTCTCCTCCTCCGACTTCAAGCGCAGGCCATGGACTTCCCCGGCGCTCGATCGGAGCCGCTTCGAGGTTACGGCTGCTGCTGCCGAGAGCTCCGACGAGACCGATGAGCCGAAGAGCAGCTTGTTCAAGACTCTCGAGCTCGGGTCGTTGTTCGGGCTCTGGTACCTGTTCAACATCTACTTCAATATCTATAACAAGCAGGTGTTGAAGGTGTTCCCGTACCCGGCTACTGTTACTGGAATACAATTTGCTGTCGGGACTGTTCTTGTTCTGCTCATGTGGGGTTTGAATCTCTACAAGAAGCCAAAAATCACCGGTGCACAGCTCGCAGCAATTCTGCCACTGGCCATTGTTCACACTTTGGGTAACCTTTTTACTAATATGAGTCTTGGGAAAGTGGCTGTTTCATTCACTCACACGATCAAGGCTAGTGAGCCCTTTTTCTCGGTTATCCTCTCTGCCATGTTTCTCGGTGAGATACCAACTCCTTGGGTGGTCGCTTCCCTGCTACCAATTGTTGGTGGAGTGGGACTGGCATCGGTTACTGAGGCCTCATTTAACTGGGCGGGATTCTGGAGTGCTATGGCTTCCAATTTGACAAACCAATCTCGCAATGTTCTCAGCAAGAAAGTCATGGTTAAAGACAAGGCATCTATGGACAACATTACACTGTTCTCGATAATAACAGTCATGTCCTTTTTCTTGTTGACCCCTGTGGCCTTCTTCTTGGAAGGGGTGAAATTTACTCCTGCAGCAATGACATCTGCTGGATTGAATGTTAACCAATTATATATTAGGTCTTTTATTGCTGCACTCTGCTTCCACGCATATCAGCAGGTTTCATATATGATATTGGCGAGGGTATCACCTGTTACTCACTCTGTCGGCAATTGTGTGAAGCGAGTGGTGGTTATCGTGAGCTCTGTTATCTTCTTCAAAACACCTGTCTCACCTATTAACTCTCTTGGAACTGGGATTGCACTTGCTGGAGTTTTCTTGTATTCAAGGGTGAAGCGCATCAAGGCAAAGCCGAAGACTGCTTGA

Protein Analysis

410

Amino Acids

44.53

Weight (kDa)

10.11

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 108 - 397 1.9e-125 Triose-phosphate Transporter family
EamA PF00892 126 - 242 5.2e-11 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012865)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 376
Acc36I ACCTGC 2 cut(s) 376, 1012
Acc65I GGTACC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 704
AccBSI CCGCTC 1 cut(s) 65
AccII CGCG 2 cut(s) 99, 131
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 1 cut(s) 926
AfaI GTAC 2 cut(s) 350, 407
AfiI CCNNNNNNNGG 3 cut(s) 250, 409, 704
AflIII ACRYGT 1 cut(s) 97
AgeI ACCGGT 1 cut(s) 500
AgsI TTSAA 9 cut(s) 205, 313, 358, 370, 394, 475, 961, 1123, 1191
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 5 cut(s) 276, 306, 325, 511, 1107
AluI AGCT 5 cut(s) 276, 306, 325, 511, 1107
Alw21I GWGCWC 4 cut(s) 278, 327, 508, 1109
Alw26I GTCTC 4 cut(s) 106, 193, 278, 1138
Alw44I GTGCAC 1 cut(s) 504
AlwI GGATC 1 cut(s) 171
Ama87I CYCGRG 2 cut(s) 320, 326
AoxI GGCC 4 cut(s) 212, 531, 735, 903
ApaLI GTGCAC 1 cut(s) 504
ApeKI GCWGC 7 cut(s) 260, 263, 266, 303, 515, 938, 995
ApoI RAATTY 1 cut(s) 926
ArsI GACNNNNNNTTYG 2 cut(s) 1116, 1148
AsiGI ACCGGT 1 cut(s) 500
Asp700I GAANNNNTTC 1 cut(s) 398
Asp718I GGTACC 1 cut(s) 348
AspLEI GCGC 4 cut(s) 133, 210, 232, 1203
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 2 cut(s) 227, 410
AsuHPI GGTGA 6 cut(s) 490, 671, 934, 1044, 1128, 1207
AvaI CYCGRG 2 cut(s) 320, 326
AvaII GGWCC 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 508
BalI TGGCCA 1 cut(s) 533
BanI GGYRCC 1 cut(s) 348
BanII GRGCYC 5 cut(s) 278, 327, 345, 624, 1109
BbsI GAAGAC 1 cut(s) 1226
Bbv12I GWGCWC 4 cut(s) 278, 327, 508, 1109
BbvI GCAGC 7 cut(s) 247, 250, 253, 315, 527, 950, 982
BceAI ACGGC 2 cut(s) 13, 273
BciT130I CCWGG 1 cut(s) 181
BcnI CCSGG 2 cut(s) 227, 410
BcoDI GTCTC 4 cut(s) 106, 193, 278, 1138
BfaI CTAG 1 cut(s) 615
BfmI CTRYAG 1 cut(s) 936
BfoI RGCGCY 1 cut(s) 233
BfuAI ACCTGC 2 cut(s) 376, 1012
Bme1390I CCNGG 3 cut(s) 181, 227, 410
Bme18I GGWCC 1 cut(s) 183
BmeT110I CYCGRG 2 cut(s) 320, 326
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 2 cut(s) 242, 350
BmrFI CCNGG 3 cut(s) 181, 227, 410
BmrI ACTGGG 2 cut(s) 757, 1167
BmsI GCATC 3 cut(s) 731, 845, 1212
BmuI ACTGGG 2 cut(s) 757, 1167
BpiI GAAGAC 1 cut(s) 1226
BpmI CTGGAG 2 cut(s) 781, 1194
BpuEI CTTGAG 2 cut(s) 29, 98
BpuMI CCSGG 2 cut(s) 227, 410
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 3 cut(s) 215, 225, 674
BsaWI WCCGGW 1 cut(s) 500
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 409, 704
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 5 cut(s) 427, 534, 723, 752, 1162
Bse3DI GCAATG 2 cut(s) 805, 948
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 3 cut(s) 215, 225, 674
BseLI CCNNNNNNNGG 3 cut(s) 250, 409, 704
BseMI GCAATG 2 cut(s) 805, 948
BseMII CTCAG 4 cut(s) 80, 94, 723, 820
BseNI ACTGG 5 cut(s) 427, 534, 723, 752, 1162
BseRI GAGGAG 5 cut(s) 32, 148, 155, 181, 184
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 7 cut(s) 247, 250, 253, 315, 527, 950, 982
BsgI GTGCAG 1 cut(s) 981
Bsh1236I CGCG 2 cut(s) 99, 131
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 4 cut(s) 214, 533, 737, 905
BshNI GGYRCC 1 cut(s) 348
BshTI ACCGGT 1 cut(s) 500
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 4 cut(s) 278, 327, 508, 1109
BsiHKCI CYCGRG 2 cut(s) 320, 326
BsiSI CCGG 3 cut(s) 227, 410, 501
BslFI GGGAC 4 cut(s) 16, 34, 457, 729
BslI CCNNNNNNNGG 3 cut(s) 250, 409, 704
BsmAI GTCTC 4 cut(s) 106, 193, 278, 1138
BsmBI CGTCTC 2 cut(s) 106, 193
BsmFI GGGAC 4 cut(s) 16, 34, 457, 729
BsnI GGCC 4 cut(s) 214, 533, 737, 905
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 2 cut(s) 320, 326
Bsp1286I GDGCHC 6 cut(s) 278, 327, 345, 508, 624, 1109
Bsp143I GATC 3 cut(s) 176, 235, 606
Bsp19I CCATGG 1 cut(s) 215
BspANI GGCC 4 cut(s) 214, 533, 737, 905
BspCNI CTCAG 4 cut(s) 79, 93, 724, 819
BspFNI CGCG 2 cut(s) 99, 131
BspLI GGNNCC 2 cut(s) 242, 350
BspMAI CTGCAG 1 cut(s) 940
BspMI ACCTGC 2 cut(s) 376, 1012
BspPI GGATC 1 cut(s) 171
BspQI GCTCTTC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 348
BspTNI GGTCTC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 65
BsrDI GCAATG 2 cut(s) 805, 948
BsrFI RCCGGY 1 cut(s) 500
BsrI ACTGG 5 cut(s) 427, 534, 723, 752, 1162
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 3 cut(s) 215, 225, 674
BssMI GATC 3 cut(s) 176, 235, 606
BssT1I CCWWGG 2 cut(s) 215, 674
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 4 cut(s) 418, 448, 858, 874
Bst6I CTCTTC 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 212, 513
BstDEI CTNAG 4 cut(s) 66, 80, 732, 806
BstDSI CCRYGG 1 cut(s) 215
BstEII GGTNACC 1 cut(s) 551
BstFNI CGCG 2 cut(s) 99, 131
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 4 cut(s) 133, 210, 232, 1203
BstKTI GATC 3 cut(s) 179, 238, 609
BstMAI GTCTC 4 cut(s) 106, 193, 278, 1138
BstMBI GATC 3 cut(s) 176, 235, 606
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 266, 512
BstNI CCWGG 1 cut(s) 181
BstPI GGTNACC 1 cut(s) 551
BstSCI CCNGG 3 cut(s) 179, 225, 408
BstSFI CTRYAG 1 cut(s) 936
BstSLI GKGCMC 1 cut(s) 508
BstUI CGCG 2 cut(s) 99, 131
BstV1I GCAGC 7 cut(s) 247, 250, 253, 315, 527, 950, 982
BstV2I GAAGAC 1 cut(s) 1226
BstXI CCANNNNNNTGG 1 cut(s) 675
BsuRI GGCC 4 cut(s) 214, 533, 737, 905
BtgI CCRYGG 1 cut(s) 215
BtsIMutI CAGTG 2 cut(s) 527, 854
BveI ACCTGC 2 cut(s) 376, 1012
Cac8I GCNNGC 2 cut(s) 212, 513
CfoI GCGC 4 cut(s) 133, 210, 232, 1203
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 349, 406
CspAI ACCGGT 1 cut(s) 500
CviAII CATG 5 cut(s) 216, 463, 649, 820, 877
CviQI GTAC 2 cut(s) 349, 406
DdeI CTNAG 4 cut(s) 66, 80, 732, 806
DpnI GATC 3 cut(s) 178, 237, 608
DpnII GATC 3 cut(s) 176, 235, 606
EaeI YGGCCR 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
EciI GGCGGA 2 cut(s) 94, 133
Ecl136II GAGCTC 3 cut(s) 276, 325, 1107
Eco130I CCWWGG 2 cut(s) 215, 674
Eco147I AGGCCT 1 cut(s) 737
Eco24I GRGCYC 5 cut(s) 278, 327, 345, 624, 1109
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 183
Eco53kI GAGCTC 3 cut(s) 276, 325, 1107
Eco88I CYCGRG 2 cut(s) 320, 326
Eco91I GGTNACC 1 cut(s) 551
EcoICRI GAGCTC 3 cut(s) 276, 325, 1107
EcoO65I GGTNACC 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 179
EcoT14I CCWWGG 2 cut(s) 215, 674
EcoT38I GRGCYC 5 cut(s) 278, 327, 345, 624, 1109
ErhI CCWWGG 2 cut(s) 215, 674
Esp3I CGTCTC 2 cut(s) 106, 193
FaeI CATG 5 cut(s) 219, 466, 652, 823, 880
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FaqI GGGAC 4 cut(s) 16, 34, 457, 729
FatI CATG 5 cut(s) 215, 462, 648, 819, 876
FauI CCCGC 3 cut(s) 59, 179, 745
FriOI GRGCYC 5 cut(s) 278, 327, 345, 624, 1109
FspBI CTAG 1 cut(s) 615
GlaI GCGC 4 cut(s) 132, 209, 231, 1202
GsuI CTGGAG 2 cut(s) 781, 1194
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 4 cut(s) 214, 533, 737, 905
HapII CCGG 3 cut(s) 227, 410, 501
HgaI GACGC 1 cut(s) 88
HhaI GCGC 4 cut(s) 133, 210, 232, 1203
Hin1II CATG 5 cut(s) 219, 466, 652, 823, 880
Hin6I GCGC 4 cut(s) 131, 208, 230, 1201
HinP1I GCGC 4 cut(s) 131, 208, 230, 1201
HincII GTYRAC 2 cut(s) 894, 967
HindII GTYRAC 2 cut(s) 894, 967
HinfI GANTC 6 cut(s) 84, 155, 316, 475, 571, 756
HpaI GTTAAC 1 cut(s) 967
HpaII CCGG 3 cut(s) 227, 410, 501
HphI GGTGA 6 cut(s) 490, 671, 934, 1044, 1128, 1207
Hpy166II GTNNAC 4 cut(s) 506, 541, 894, 967
Hpy188I TCNGA 4 cut(s) 83, 199, 240, 280
Hpy188III TCNNGA 6 cut(s) 313, 320, 442, 760, 862, 1102
Hpy8I GTNNAC 4 cut(s) 506, 541, 894, 967
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 4 cut(s) 25, 388, 911, 916
HpyCH4III ACNGT 4 cut(s) 418, 448, 858, 874
HpyCH4V TGCA 5 cut(s) 4, 506, 938, 998, 1166
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 512
HpyF3I CTNAG 4 cut(s) 66, 80, 732, 806
Hsp92II CATG 5 cut(s) 219, 466, 652, 823, 880
HspAI GCGC 4 cut(s) 131, 208, 230, 1201
KpnI GGTACC 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 967
Kzo9I GATC 3 cut(s) 176, 235, 606
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 4 cut(s) 94, 146, 240, 281
Lsp1109I GCAGC 7 cut(s) 247, 250, 253, 315, 527, 950, 982
LweI GCATC 3 cut(s) 731, 845, 1212
MaeI CTAG 1 cut(s) 615
MaeIII GTNAC 5 cut(s) 253, 418, 551, 727, 1057
MalI GATC 3 cut(s) 178, 237, 608
MbiI CCGCTC 1 cut(s) 65
MboI GATC 3 cut(s) 176, 235, 606
MboII GAAGA 4 cut(s) 310, 901, 1108, 1111
MfeI CAATTG 2 cut(s) 699, 1075
MhlI GDGCHC 6 cut(s) 278, 327, 345, 508, 624, 1109
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 7 cut(s) 431, 519, 699, 778, 926, 971, 1075
MluI ACGCGT 1 cut(s) 97
MluNI TGGCCA 1 cut(s) 533
MlyI GAGTC 3 cut(s) 149, 310, 580
MmeI TCCRAC 2 cut(s) 222, 303
Mox20I TGGCCA 1 cut(s) 533
MroXI GAANNNNTTC 1 cut(s) 398
MscI TGGCCA 1 cut(s) 533
MseI TTAA 4 cut(s) 744, 825, 966, 1143
Msp20I TGGCCA 1 cut(s) 533
MspI CCGG 3 cut(s) 227, 410, 501
MspR9I CCNGG 3 cut(s) 181, 227, 410
MunI CAATTG 2 cut(s) 699, 1075
MvaI CCWGG 1 cut(s) 181
MvnI CGCG 2 cut(s) 99, 131
MwoI GCNNNNNNNGC 2 cut(s) 266, 512
NciI CCSGG 2 cut(s) 227, 410
NcoI CCATGG 1 cut(s) 215
NdeII GATC 3 cut(s) 176, 235, 606
NlaIII CATG 5 cut(s) 219, 466, 652, 823, 880
NlaIV GGNNCC 2 cut(s) 242, 350
NmeAIII GCCGAG 1 cut(s) 295
PaeR7I CTCGAG 1 cut(s) 320
PaqCI CACCTGC 1 cut(s) 376
PceI AGGCCT 1 cut(s) 737
PciSI GCTCTTC 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 3 cut(s) 84, 475, 756
PflMI CCANNNNNTGG 1 cut(s) 704
PinAI ACCGGT 1 cut(s) 500
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 3 cut(s) 149, 310, 579
PpsI GAGTC 3 cut(s) 149, 310, 579
Psp124BI GAGCTC 3 cut(s) 278, 327, 1109
Psp6I CCWGG 1 cut(s) 179
PspEI GGTNACC 1 cut(s) 551
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 242, 350
PspPI GGNCC 1 cut(s) 183
PstI CTGCAG 1 cut(s) 940
PvuI CGATCG 1 cut(s) 238
RsaI GTAC 2 cut(s) 350, 407
RsaNI GTAC 2 cut(s) 349, 406
SacI GAGCTC 3 cut(s) 278, 327, 1109
SapI GCTCTTC 1 cut(s) 293
SaqAI TTAA 4 cut(s) 744, 825, 966, 1143
Sau3AI GATC 3 cut(s) 176, 235, 606
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 3 cut(s) 149, 310, 580
ScrFI CCNGG 3 cut(s) 181, 227, 410
SduI GDGCHC 6 cut(s) 278, 327, 345, 508, 624, 1109
SfaNI GCATC 3 cut(s) 731, 845, 1212
SfcI CTRYAG 1 cut(s) 936
Sfr274I CTCGAG 1 cut(s) 320
SgrAI CRCCGGYG 1 cut(s) 500
SinI GGWCC 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 3 cut(s) 44, 113, 320
SmoI CTYRAG 3 cut(s) 44, 113, 320
Sse9I AATT 7 cut(s) 431, 519, 699, 778, 926, 971, 1075
SseBI AGGCCT 1 cut(s) 737
SspMI CTAG 1 cut(s) 615
SstI GAGCTC 3 cut(s) 278, 327, 1109
StuI AGGCCT 1 cut(s) 737
StyD4I CCNGG 3 cut(s) 179, 225, 408
StyI CCWWGG 2 cut(s) 215, 674
TaaI ACNGT 4 cut(s) 418, 448, 858, 874
TaqI TCGA 4 cut(s) 234, 249, 321, 863
TaqII GACCGA 1 cut(s) 302
TasI AATT 7 cut(s) 431, 519, 699, 778, 926, 971, 1075
TauI GCSGC 4 cut(s) 14, 57, 131, 246
TfiI GAWTC 3 cut(s) 84, 475, 756
Tru1I TTAA 4 cut(s) 744, 825, 966, 1143
Tru9I TTAA 4 cut(s) 744, 825, 966, 1143
TscAI CASTG 2 cut(s) 534, 861
TseI GCWGC 7 cut(s) 260, 263, 266, 303, 515, 938, 995
TspDTI ATGAA 2 cut(s) 582, 1017
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 2 cut(s) 534, 861
Van91I CCANNNNNTGG 1 cut(s) 704
VneI GTGCAC 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 1 cut(s) 926
XhoI CTCGAG 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.