RLG00000004271

Triose phosphate phosphate translocator, non-green plastid

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
57901387 .. 57904616
3230 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004271

Sequence Viewer

Length: 1056 bp
ATGCAGACCGCCGCCTTCACTCTCTCGCCGTCTCTCCCTCTCCTCAAGTCTCGCCGCCTCTCCGCCCAAGCCCCCACCATCAGATTCGCTCCCACACGTGTCTCCGCCTCCCTGAAGCCTGACACCGCTCTCACCTCCTCCACCAATGACGCCCTCTCCGCCTCTCTCTCCCGCCGATCCTGGTCCGTCTCCTCCAATGACTTCAAGCTCAGGCCCTGGACTTCTCCGGCCCTCGATCGGAGCCGTTTCGAGGTCGCGGCTACTGCCGAGAGCTCCGGCGAGACCGCCGAGCCGAAGAGCAGCTTGTTCAAGACTCTCGAGCTCGGGTCGTTGTTCGGCCTCTGGTACCTGTTCAACATCTACTTCAATATCTATAACAAGCAGGTCTTGAAGGTGTTCCCGTACCCGGCAACTGTTACCGGTATCCAATTTGCTGTCGGGACTGTTGTTGTTCTGCTCATGTGGGGTTTGAATCTCTACAAGAAGCCGAAAATCAGCGGTGCACAGCTCGCAGCAATTCTGCCACTGGCCATTGTTCACACTCTGGGTAACCTTTTTACTAATATGAGTCTTGGGAAAGTGGCTGTATCATTCACTCACACAATCAAGGCTAGTGAGCCCTTTTTCTCAGTTGTCCTCTCTGCCATGTTTCTTGGTGAGGAATCTATGGACAACATTACACTCTTCTCGATAATAACAGTCATGTCCTTTTTCTTGTTGTCTCCTGTGGTCATCTTCTTGGAAGGGGTGAAATTTACTCCAGCAGCCATGACATCTGCTGGATTGGGGGTTAAACAAGTATATACTAGGTCTCTTATTGCTGCACTCTGCTTCCACGCATATCAGCAGGTTTCGTATATGATATTGCAAAGGGTATCACCTGTTACTCACTCTGTCGGCAACTGTGTCAAGCGAGTGGTGGTTATCGTGAGCTCTGTTATCTTCTTCAAAACACCTGTCTCACCTATCAACTCTCTTGGAACTGGGATTGCACTTGCTGGAGTTTTCTTGTATTCAAGGGTGAAGCGCATCAAGGCTAAGCCGAAGACTGCTTGA

Protein Analysis

352

Amino Acids

38.17

Weight (kDa)

10.15

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 107 - 221 8.3e-47 Triose-phosphate Transporter family
EamA PF00892 125 - 235 2.6e-08 EamA-like transporter family
TPT PF03151 222 - 339 2.3e-44 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012865)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 373, 838
Acc65I GGTACC 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 345
AccBSI CCGCTC 1 cut(s) 128
AccII CGCG 1 cut(s) 257
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 528
AcsI RAATTY 1 cut(s) 752
AcuI CTGAAG 1 cut(s) 134
AcvI CACGTG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 2 cut(s) 347, 404
AfiI CCNNNNNNNGG 3 cut(s) 237, 250, 406
AflIII ACRYGT 2 cut(s) 95, 97
AgeI ACCGGT 1 cut(s) 419
AgsI TTSAA 8 cut(s) 205, 310, 355, 367, 391, 472, 949, 1017
AjnI CCWGG 2 cut(s) 179, 215
AluBI AGCT 6 cut(s) 208, 273, 303, 322, 508, 933
AluI AGCT 6 cut(s) 208, 273, 303, 322, 508, 933
Alw21I GWGCWC 4 cut(s) 275, 324, 505, 935
Alw26I GTCTC 8 cut(s) 36, 54, 106, 193, 275, 726, 816, 964
Alw44I GTGCAC 1 cut(s) 501
AlwI GGATC 1 cut(s) 171
AlwNI CAGNNNCTG 1 cut(s) 216
Ama87I CYCGRG 2 cut(s) 317, 323
AoxI GGCC 4 cut(s) 212, 228, 337, 528
ApaLI GTGCAC 1 cut(s) 501
ApeKI GCWGC 4 cut(s) 300, 512, 764, 821
ApoI RAATTY 1 cut(s) 752
ArsI GACNNNNNNTTYG 2 cut(s) 942, 974
AsiGI ACCGGT 1 cut(s) 419
Asp700I GAANNNNTTC 1 cut(s) 395
Asp718I GGTACC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 1029
AspS9I GGNCC 3 cut(s) 183, 213, 229
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 6 cut(s) 124, 668, 760, 870, 954, 1033
AvaI CYCGRG 2 cut(s) 317, 323
AvaII GGWCC 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 505
BalI TGGCCA 1 cut(s) 530
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 4 cut(s) 275, 324, 621, 935
BbrPI CACGTG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 1052
Bbv12I GWGCWC 4 cut(s) 275, 324, 505, 935
BbvI GCAGC 4 cut(s) 312, 524, 776, 808
BccI CCATC 1 cut(s) 86
BceAI ACGGC 2 cut(s) 13, 228
BciT130I CCWGG 2 cut(s) 181, 217
BciVI GTATCC 1 cut(s) 434
BcnI CCSGG 1 cut(s) 407
BcoDI GTCTC 8 cut(s) 36, 54, 106, 193, 275, 726, 816, 964
BfaI CTAG 2 cut(s) 612, 807
BfuAI ACCTGC 2 cut(s) 373, 838
BfuI GTATCC 1 cut(s) 434
BisI GCNGC 7 cut(s) 12, 55, 258, 301, 513, 765, 822
BlpI GCTNAGC 1 cut(s) 1038
BlsI GCNGC 7 cut(s) 13, 56, 259, 302, 514, 766, 823
Bme1390I CCNGG 3 cut(s) 181, 217, 407
Bme18I GGWCC 1 cut(s) 183
BmeT110I CYCGRG 2 cut(s) 317, 323
BmgT120I GGNCC 3 cut(s) 183, 213, 229
BmiI GGNNCC 2 cut(s) 242, 347
BmrFI CCNGG 3 cut(s) 181, 217, 407
BmrI ACTGGG 1 cut(s) 993
BmsI GCATC 1 cut(s) 1038
BmuI ACTGGG 1 cut(s) 993
BpiI GAAGAC 1 cut(s) 1052
BpmI CTGGAG 2 cut(s) 744, 1020
Bpu10I CCTNAGC 1 cut(s) 209
Bpu1102I GCTNAGC 1 cut(s) 1038
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 407
BsaAI YACGTR 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 2 cut(s) 275, 816
BsaJI CCNNGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 419
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 250, 406
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 2 cut(s) 531, 988
BseBI CCWGG 2 cut(s) 181, 217
BseDI CCNNGG 1 cut(s) 215
BseLI CCNNNNNNNGG 3 cut(s) 237, 250, 406
BseMII CTCAG 2 cut(s) 223, 642
BseNI ACTGG 2 cut(s) 531, 988
BseRI GAGGAG 3 cut(s) 32, 127, 181
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 4 cut(s) 312, 524, 776, 808
BsgI GTGCAG 1 cut(s) 807
Bsh1236I CGCG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 4 cut(s) 214, 230, 339, 530
BshNI GGYRCC 1 cut(s) 345
BshTI ACCGGT 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 4 cut(s) 275, 324, 505, 935
BsiHKCI CYCGRG 2 cut(s) 317, 323
BsiSI CCGG 4 cut(s) 227, 276, 407, 420
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 3 cut(s) 237, 250, 406
BsmAI GTCTC 8 cut(s) 36, 54, 106, 193, 275, 726, 816, 964
BsmBI CGTCTC 2 cut(s) 36, 193
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 4 cut(s) 214, 230, 339, 530
Bso31I GGTCTC 2 cut(s) 275, 816
BsoBI CYCGRG 2 cut(s) 317, 323
Bsp1286I GDGCHC 5 cut(s) 275, 324, 505, 621, 935
Bsp143I GATC 2 cut(s) 176, 235
Bsp1720I GCTNAGC 1 cut(s) 1038
BspANI GGCC 4 cut(s) 214, 230, 339, 530
BspCNI CTCAG 2 cut(s) 222, 641
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 2 cut(s) 242, 347
BspMI ACCTGC 2 cut(s) 373, 838
BspPI GGATC 1 cut(s) 171
BspQI GCTCTTC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 345
BspTNI GGTCTC 2 cut(s) 275, 816
BsrBI CCGCTC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 419
BsrI ACTGG 2 cut(s) 531, 988
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 2 cut(s) 176, 235
BssNI GRCGYC 1 cut(s) 150
Bst2UI CCWGG 2 cut(s) 181, 217
Bst4CI ACNGT 4 cut(s) 415, 445, 700, 905
Bst6I CTCTTC 2 cut(s) 290, 689
BstACI GRCGYC 1 cut(s) 150
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 3 cut(s) 209, 628, 1038
BstEII GGTNACC 1 cut(s) 548
BstFNI CGCG 1 cut(s) 257
BstHHI GCGC 1 cut(s) 1029
BstKTI GATC 2 cut(s) 179, 238
BstMAI GTCTC 8 cut(s) 36, 54, 106, 193, 275, 726, 816, 964
BstMBI GATC 2 cut(s) 176, 235
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 3 cut(s) 158, 263, 509
BstNI CCWGG 2 cut(s) 181, 217
BstPI GGTNACC 1 cut(s) 548
BstSCI CCNGG 3 cut(s) 179, 215, 405
BstSLI GKGCMC 1 cut(s) 505
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 4 cut(s) 312, 524, 776, 808
BstV2I GAAGAC 1 cut(s) 1052
BsuI GTATCC 1 cut(s) 434
BsuRI GGCC 4 cut(s) 214, 230, 339, 530
BtsIMutI CAGTG 1 cut(s) 524
BveI ACCTGC 2 cut(s) 373, 838
Cac8I GCNNGC 1 cut(s) 510
CaiI CAGNNNCTG 1 cut(s) 216
CfoI GCGC 1 cut(s) 1029
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 3 cut(s) 183, 213, 229
CseI GACGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 346, 403
CspAI ACCGGT 1 cut(s) 419
CviAII CATG 4 cut(s) 460, 646, 703, 769
CviQI GTAC 2 cut(s) 346, 403
DdeI CTNAG 3 cut(s) 209, 628, 1038
DpnI GATC 2 cut(s) 178, 237
DpnII GATC 2 cut(s) 176, 235
EaeI YGGCCR 1 cut(s) 528
Eam1104I CTCTTC 2 cut(s) 290, 689
EarI CTCTTC 2 cut(s) 290, 689
EciI GGCGGA 3 cut(s) 52, 94, 148
Ecl136II GAGCTC 3 cut(s) 273, 322, 933
Eco24I GRGCYC 4 cut(s) 275, 324, 621, 935
Eco31I GGTCTC 2 cut(s) 275, 816
Eco47I GGWCC 1 cut(s) 183
Eco53kI GAGCTC 3 cut(s) 273, 322, 933
Eco57I CTGAAG 1 cut(s) 134
Eco72I CACGTG 1 cut(s) 98
Eco88I CYCGRG 2 cut(s) 317, 323
Eco91I GGTNACC 1 cut(s) 548
EcoICRI GAGCTC 3 cut(s) 273, 322, 933
EcoO109I RGGNCCY 1 cut(s) 213
EcoO65I GGTNACC 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 179, 215
EcoT38I GRGCYC 4 cut(s) 275, 324, 621, 935
Esp3I CGTCTC 2 cut(s) 36, 193
FaeI CATG 4 cut(s) 463, 649, 706, 772
FalI AAGNNNNNCTT 4 cut(s) 287, 319, 371, 403
FaqI GGGAC 1 cut(s) 454
FatI CATG 4 cut(s) 459, 645, 702, 768
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 7 cut(s) 12, 55, 258, 301, 513, 765, 822
FriOI GRGCYC 4 cut(s) 275, 324, 621, 935
Fsp4HI GCNGC 7 cut(s) 12, 55, 258, 301, 513, 765, 822
FspBI CTAG 2 cut(s) 612, 807
GlaI GCGC 1 cut(s) 1028
GluI GCNGC 7 cut(s) 12, 55, 258, 301, 513, 765, 822
GsuI CTGGAG 2 cut(s) 744, 1020
HaeIII GGCC 4 cut(s) 214, 230, 339, 530
HapII CCGG 4 cut(s) 227, 276, 407, 420
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 1029
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 4 cut(s) 463, 649, 706, 772
Hin6I GCGC 1 cut(s) 1027
HinP1I GCGC 1 cut(s) 1027
HinfI GANTC 5 cut(s) 84, 313, 472, 568, 662
HpaII CCGG 4 cut(s) 227, 276, 407, 420
HphI GGTGA 6 cut(s) 124, 668, 760, 870, 954, 1033
Hpy166II GTNNAC 2 cut(s) 503, 538
Hpy188I TCNGA 2 cut(s) 83, 240
Hpy188III TCNNGA 6 cut(s) 310, 317, 388, 439, 688, 928
Hpy8I GTNNAC 2 cut(s) 503, 538
HpyAV CCTTC 3 cut(s) 25, 385, 737
HpyCH4III ACNGT 4 cut(s) 415, 445, 700, 905
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 4, 503, 824, 868, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 263, 509
HpyF3I CTNAG 3 cut(s) 209, 628, 1038
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 4 cut(s) 463, 649, 706, 772
HspAI GCGC 1 cut(s) 1027
KpnI GGTACC 1 cut(s) 349
Kzo9I GATC 2 cut(s) 176, 235
LguI GCTCTTC 1 cut(s) 290
LmnI GCTCC 3 cut(s) 94, 240, 278
Lsp1109I GCAGC 4 cut(s) 312, 524, 776, 808
LweI GCATC 1 cut(s) 1038
MaeI CTAG 2 cut(s) 612, 807
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 3 cut(s) 415, 548, 883
MalI GATC 2 cut(s) 178, 237
MbiI CCGCTC 1 cut(s) 128
MboI GATC 2 cut(s) 176, 235
MboII GAAGA 5 cut(s) 307, 676, 727, 934, 937
MhlI GDGCHC 5 cut(s) 275, 324, 505, 621, 935
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 3 cut(s) 428, 516, 752
MluNI TGGCCA 1 cut(s) 530
MlyI GAGTC 2 cut(s) 307, 577
Mox20I TGGCCA 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 530
MseI TTAA 1 cut(s) 792
Msp20I TGGCCA 1 cut(s) 530
MspA1I CMGCKG 1 cut(s) 498
MspI CCGG 4 cut(s) 227, 276, 407, 420
MspR9I CCNGG 3 cut(s) 181, 217, 407
MvaI CCWGG 2 cut(s) 181, 217
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 3 cut(s) 158, 263, 509
NciI CCSGG 1 cut(s) 407
NdeII GATC 2 cut(s) 176, 235
NlaIII CATG 4 cut(s) 463, 649, 706, 772
NlaIV GGNNCC 2 cut(s) 242, 347
NmeAIII GCCGAG 2 cut(s) 292, 313
PaeR7I CTCGAG 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 290
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 3 cut(s) 84, 472, 662
PinAI ACCGGT 1 cut(s) 419
PkrI GCNGC 7 cut(s) 13, 56, 259, 302, 514, 766, 823
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 2 cut(s) 307, 576
PmaCI CACGTG 1 cut(s) 98
PmlI CACGTG 1 cut(s) 98
PpsI GAGTC 2 cut(s) 307, 576
Ppu21I YACGTR 1 cut(s) 98
Psp124BI GAGCTC 3 cut(s) 275, 324, 935
Psp6I CCWGG 2 cut(s) 179, 215
PspCI CACGTG 1 cut(s) 98
PspEI GGTNACC 1 cut(s) 548
PspGI CCWGG 2 cut(s) 179, 215
PspN4I GGNNCC 2 cut(s) 242, 347
PspPI GGNCC 3 cut(s) 183, 213, 229
PstNI CAGNNNCTG 1 cut(s) 216
PvuI CGATCG 1 cut(s) 238
RsaI GTAC 2 cut(s) 347, 404
RsaNI GTAC 2 cut(s) 346, 403
SacI GAGCTC 3 cut(s) 275, 324, 935
SapI GCTCTTC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 792
SatI GCNGC 7 cut(s) 12, 55, 258, 301, 513, 765, 822
Sau3AI GATC 2 cut(s) 176, 235
Sau96I GGNCC 3 cut(s) 183, 213, 229
SchI GAGTC 2 cut(s) 307, 577
ScrFI CCNGG 3 cut(s) 181, 217, 407
SduI GDGCHC 5 cut(s) 275, 324, 505, 621, 935
SfaNI GCATC 1 cut(s) 1038
Sfr274I CTCGAG 1 cut(s) 317
SinI GGWCC 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 317
SmlI CTYRAG 2 cut(s) 44, 317
SmoI CTYRAG 2 cut(s) 44, 317
Sse9I AATT 3 cut(s) 428, 516, 752
SspMI CTAG 2 cut(s) 612, 807
SstI GAGCTC 3 cut(s) 275, 324, 935
StyD4I CCNGG 3 cut(s) 179, 215, 405
TaaI ACNGT 4 cut(s) 415, 445, 700, 905
TaiI ACGT 1 cut(s) 100
TaqI TCGA 4 cut(s) 234, 249, 318, 689
TasI AATT 3 cut(s) 428, 516, 752
TauI GCSGC 3 cut(s) 14, 57, 260
TfiI GAWTC 3 cut(s) 84, 472, 662
Tru1I TTAA 1 cut(s) 792
Tru9I TTAA 1 cut(s) 792
TscAI CASTG 1 cut(s) 531
TseI GCWGC 4 cut(s) 300, 512, 764, 821
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 1 cut(s) 531
VneI GTGCAC 1 cut(s) 501
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 1 cut(s) 752
XhoI CTCGAG 1 cut(s) 317
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 2 cut(s) 612, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.