AT5G37540

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
14912659 .. 14914449
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37540.1

Sequence Viewer

Length: 1329 bp
ATGTCTACCATTTCAAAACCTCTCTTCTTAAAACTTCTCTATATCTTCTTCTTCTTCTGCTACTCAGTTTCTCTCTCATGGTCTTCGTCTCTTTCTCTCCACTTTCCTCTCACATCTCTTCGTCTCACTCCAACCACAAACTCCTCCTCCTTCAAAACCTCCCTCCTTTCTCGCCGGAACCCATCTCCGCCGTCGTCTCCGTACACTTTCCGATCAAACATCAAATACTCAATGGCTCTAATCCTCTCTCTTCCCATAGGAACACCATCTCAGTCACAAGAGCTAGTTCTTGACACCGGAAGCCAACTCTCATGGATCCAATGCCATCCCAAGAAAATCAAGAAACCACTTCCTCCTCCAACGACGTCGTTTGATCCTTCTTTATCTTCATCGTTCTCCGACCTACCTTGCTCTCATCCTCTTTGTAAACCTAGAATTCCCGATTTTACCCTTCCCACGTCTTGTGACTCGAACCGTCTCTGTCACTACTCTTACTTCTACGCTGATGGAACCTTCGCCGAGGGCAATCTCGTTAAAGAAAAATTCACTTTCTCAAATTCCCAAACTACCCCTCCTTTGATTCTTGGTTGTGCTAAAGAGTCAACTGACGAGAAGGGTATTTTGGGAATGAATCTTGGTCGTCTTTCTTTTATCTCACAAGCAAAGATTTCTAAATTCTCTTACTGTATCCCAACCCGGTCAAACCGTCCCGGTTTAGCCTCAACCGGCTCGTTTTACCTCGGAGATAACCCGAATTCTCGTGGTTTCAAATACGTTTCTCTTTTGACTTTTCCTCAAAGTCAACGCATGCCGAATCTAGACCCTTTAGCTTACACTGTACCATTACAAGGTATCAGAATCGGACAAAAGAGACTCAACATACCCGGTTCTGTTTTTAGACCCGATGCAGGTGGGTCGGGTCAAACCATGGTTGATTCGGGTTCTGAATTTACTCACTTAGTCGACGTGGCGTATGATAAAGTCAAAGAAGAAATAGTGAGGCTTGTGGGATCAAGATTAAAGAAAGGTTACGTGTACGGTTCGACAGCTGACATGTGTTTTGATGGTAACCATTCGATGGAGATCGGACGGTTGATAGGCGATCTTGTGTTTGAGTTTGGGAGAGGTGTTGAGATACTCGTTGAGAAACAAAGCCTTTTGGTTAACGTAGGAGGTGGGATTCACTGTGTTGGAATCGGACGGTCAAGCATGCTTGGTGCAGCTAGTAATATAATCGGGAACGTTCATCAGCAAAATCTTTGGGTTGAGTTTGATGTGACCAATAGGAGAGTTGGTTTTAGTAAAGCTGAGTGTAGATTATTGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

442

Amino Acids

48.65

Weight (kDa)

9.27

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 83 - 243 5.3e-36 Xylanase inhibitor N-terminal
TAXi_C PF14541 277 - 435 4.9e-36 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66180 AT5G37540
fragaria_vesca FvH4_1g30150
malus_domestica MD09G1270000.v1.1 MD17G1268100.v1.1
prunus_persica Prupe.3G165900_v2.0.a1
pyrus_communis pycom09g18120
rosa_chinensis RchiOBHm_Chr3g0491651
rosa_laevigata RLG00000022831
rosa_rugosa Rorug03G0250700.1
rosa_samantha Rh3AG299500 Rh3BG336200 Rh3CG332500 Rh3DG334100
rosa_wichuraiana Rw3G026460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 899
AatII GACGTC 1 cut(s) 368
Acc36I ACCTGC 1 cut(s) 899
AccB7I CCANNNNNTGG 1 cut(s) 1078
AccI GTMKAC 2 cut(s) 5, 963
AciI CCGC 1 cut(s) 188
AclI AACGTT 1 cut(s) 1242
AclWI GGATC 4 cut(s) 310, 323, 368, 1018
AcsI RAATTY 6 cut(s) 435, 542, 556, 674, 754, 947
AcyI GRCGYC 1 cut(s) 365
AfaI GTAC 3 cut(s) 203, 840, 1037
AfiI CCNNNNNNNGG 3 cut(s) 848, 908, 1078
AflIII ACRYGT 2 cut(s) 1032, 1053
AgsI TTSAA 3 cut(s) 15, 154, 769
AjiI CACGTC 2 cut(s) 459, 967
AjuI GAANNNNNNNTTGG 2 cut(s) 605, 637
AluBI AGCT 5 cut(s) 283, 830, 1049, 1223, 1307
AluI AGCT 5 cut(s) 283, 830, 1049, 1223, 1307
Alw26I GTCTC 5 cut(s) 93, 128, 201, 482, 865
AlwI GGATC 4 cut(s) 310, 323, 368, 1018
ApeKI GCWGC 1 cut(s) 1220
ApoI RAATTY 6 cut(s) 435, 542, 556, 674, 754, 947
ArsI GACNNNNNNTTYG 2 cut(s) 1043, 1075
AsuC2I CCSGG 3 cut(s) 697, 711, 885
BamHI GGATCC 1 cut(s) 315
BauI CACGAG 1 cut(s) 759
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 1232
BccI CCATC 6 cut(s) 190, 274, 333, 500, 1058, 1072
BceAI ACGGC 2 cut(s) 175, 1309
BcgI CGANNNNNNTGC 2 cut(s) 897, 931
BciVI GTATCC 1 cut(s) 698
BcnI CCSGG 3 cut(s) 697, 711, 885
BcoDI GTCTC 5 cut(s) 93, 128, 201, 482, 865
BfaI CTAG 4 cut(s) 284, 432, 818, 1224
BfuAI ACCTGC 1 cut(s) 899
BfuI GTATCC 1 cut(s) 698
BisI GCNGC 1 cut(s) 1221
BlsI GCNGC 1 cut(s) 1222
Bme1390I CCNGG 3 cut(s) 697, 711, 885
BmgBI CACGTC 2 cut(s) 459, 967
BmiI GGNNCC 3 cut(s) 179, 317, 511
BmrFI CCNGG 3 cut(s) 697, 711, 885
BmsI GCATC 1 cut(s) 895
BpiI GAAGAC 1 cut(s) 75
BpuMI CCSGG 3 cut(s) 697, 711, 885
BsaAI YACGTR 1 cut(s) 1033
BsaBI GATNNNNATC 1 cut(s) 1082
BsaHI GRCGYC 1 cut(s) 365
BsaJI CCNNGG 3 cut(s) 519, 739, 927
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 6 cut(s) 131, 161, 556, 586, 1279, 1309
Bsc4I CCNNNNNNNGG 3 cut(s) 848, 908, 1078
Bse118I RCCGGY 1 cut(s) 725
Bse8I GATNNNNATC 1 cut(s) 1082
BseDI CCNNGG 3 cut(s) 519, 739, 927
BseGI GGATG 2 cut(s) 325, 415
BseJI GATNNNNATC 1 cut(s) 1082
BseLI CCNNNNNNNGG 3 cut(s) 848, 908, 1078
BseMII CTCAG 3 cut(s) 78, 284, 1299
BseRI GAGGAG 3 cut(s) 133, 136, 345
BseXI GCAGC 1 cut(s) 1232
BsgI GTGCAG 1 cut(s) 1239
BsiSI CCGG 6 cut(s) 175, 297, 697, 711, 726, 885
BslFI GGGAC 1 cut(s) 693
BslI CCNNNNNNNGG 3 cut(s) 848, 908, 1078
BsmAI GTCTC 5 cut(s) 93, 128, 201, 482, 865
BsmBI CGTCTC 4 cut(s) 93, 128, 201, 482
BsmFI GGGAC 1 cut(s) 693
Bsp143I GATC 6 cut(s) 212, 315, 373, 1010, 1083, 1102
Bsp19I CCATGG 1 cut(s) 927
BspACI CCGC 1 cut(s) 188
BspCNI CTCAG 3 cut(s) 77, 283, 1300
BspLI GGNNCC 3 cut(s) 179, 317, 511
BspMI ACCTGC 1 cut(s) 899
BspPI GGATC 4 cut(s) 310, 323, 368, 1018
BsrFI RCCGGY 1 cut(s) 725
BssAI RCCGGY 1 cut(s) 725
BssECI CCNNGG 3 cut(s) 519, 739, 927
BssMI GATC 6 cut(s) 212, 315, 373, 1010, 1083, 1102
BssNI GRCGYC 1 cut(s) 365
BssSI CACGAG 1 cut(s) 759
BssT1I CCWWGG 1 cut(s) 927
Bst2BI CACGAG 1 cut(s) 759
Bst4CI ACNGT 8 cut(s) 476, 686, 707, 838, 1040, 1092, 1187, 1203
Bst6I CTCTTC 3 cut(s) 29, 123, 255
BstACI GRCGYC 1 cut(s) 365
BstBAI YACGTR 1 cut(s) 1033
BstC8I GCNNGC 2 cut(s) 809, 1211
BstDEI CTNAG 4 cut(s) 64, 270, 958, 1308
BstDSI CCRYGG 1 cut(s) 927
BstEII GGTNACC 1 cut(s) 1067
BstF5I GGATG 2 cut(s) 325, 415
BstKTI GATC 6 cut(s) 215, 318, 376, 1013, 1086, 1105
BstMAI GTCTC 5 cut(s) 93, 128, 201, 482, 865
BstMBI GATC 6 cut(s) 212, 315, 373, 1010, 1083, 1102
BstNSI RCATGY 3 cut(s) 811, 1057, 1213
BstPI GGTNACC 1 cut(s) 1067
BstSCI CCNGG 3 cut(s) 695, 709, 883
BstV1I GCAGC 1 cut(s) 1232
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BsuI GTATCC 1 cut(s) 698
BtgI CCRYGG 1 cut(s) 927
BtrI CACGTC 2 cut(s) 459, 967
BtsCI GGATG 2 cut(s) 325, 415
BtsIMutI CAGTG 2 cut(s) 834, 1183
BveI ACCTGC 1 cut(s) 899
Cac8I GCNNGC 2 cut(s) 809, 1211
Cfr10I RCCGGY 1 cut(s) 725
Csp6I GTAC 3 cut(s) 202, 839, 1036
CviAII CATG 6 cut(s) 78, 312, 808, 928, 1054, 1210
CviQI GTAC 3 cut(s) 202, 839, 1036
DdeI CTNAG 4 cut(s) 64, 270, 958, 1308
DpnI GATC 6 cut(s) 214, 317, 375, 1012, 1085, 1104
DpnII GATC 6 cut(s) 212, 315, 373, 1010, 1083, 1102
Eam1104I CTCTTC 3 cut(s) 29, 123, 255
EarI CTCTTC 3 cut(s) 29, 123, 255
EciI GGCGGA 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 927
Eco91I GGTNACC 1 cut(s) 1067
EcoO65I GGTNACC 1 cut(s) 1067
EcoRI GAATTC 2 cut(s) 435, 754
EcoT14I CCWWGG 1 cut(s) 927
ErhI CCWWGG 1 cut(s) 927
Esp3I CGTCTC 4 cut(s) 93, 128, 201, 482
FaeI CATG 6 cut(s) 81, 315, 811, 931, 1057, 1213
FaqI GGGAC 1 cut(s) 693
FatI CATG 6 cut(s) 77, 311, 807, 927, 1053, 1209
FblI GTMKAC 2 cut(s) 5, 963
Fnu4HI GCNGC 1 cut(s) 1221
FokI GGATG 2 cut(s) 312, 402
Fsp4HI GCNGC 1 cut(s) 1221
FspBI CTAG 4 cut(s) 284, 432, 818, 1224
GluI GCNGC 1 cut(s) 1221
HapII CCGG 6 cut(s) 175, 297, 697, 711, 726, 885
Hin1I GRCGYC 1 cut(s) 365
Hin1II CATG 6 cut(s) 81, 315, 811, 931, 1057, 1213
HincII GTYRAC 4 cut(s) 603, 803, 964, 1165
HindII GTYRAC 4 cut(s) 603, 803, 964, 1165
HpaI GTTAAC 1 cut(s) 1165
HpaII CCGG 6 cut(s) 175, 297, 697, 711, 726, 885
Hpy166II GTNNAC 8 cut(s) 6, 204, 428, 603, 803, 964, 1036, 1165
Hpy188I TCNGA 8 cut(s) 212, 400, 743, 857, 863, 946, 1088, 1199
Hpy188III TCNNGA 6 cut(s) 290, 340, 440, 818, 1014, 1237
Hpy8I GTNNAC 8 cut(s) 6, 204, 428, 603, 803, 964, 1036, 1165
Hpy99I CGWCG 4 cut(s) 196, 367, 370, 968
HpyAV CCTTC 5 cut(s) 160, 387, 461, 523, 607
HpyCH4III ACNGT 8 cut(s) 476, 686, 707, 838, 1040, 1092, 1187, 1203
HpyCH4IV ACGT 7 cut(s) 365, 458, 774, 966, 1032, 1167, 1242
HpyCH4V TGCA 2 cut(s) 908, 1220
HpyF3I CTNAG 4 cut(s) 64, 270, 958, 1308
HpySE526I ACGT 7 cut(s) 365, 458, 774, 966, 1032, 1167, 1242
Hsp92I GRCGYC 1 cut(s) 365
Hsp92II CATG 6 cut(s) 81, 315, 811, 931, 1057, 1213
KspAI GTTAAC 1 cut(s) 1165
Kzo9I GATC 6 cut(s) 212, 315, 373, 1010, 1083, 1102
LpnPI CCDG 7 cut(s) 188, 310, 710, 724, 739, 894, 898
Lsp1109I GCAGC 1 cut(s) 1232
LweI GCATC 1 cut(s) 895
MaeI CTAG 4 cut(s) 284, 432, 818, 1224
MaeII ACGT 7 cut(s) 365, 458, 774, 966, 1032, 1167, 1242
MaeIII GTNAC 6 cut(s) 273, 464, 482, 1028, 1067, 1276
MalI GATC 6 cut(s) 214, 317, 375, 1012, 1085, 1104
MboI GATC 6 cut(s) 212, 315, 373, 1010, 1083, 1102
MflI RGATCY 1 cut(s) 315
MluCI AATT 6 cut(s) 435, 542, 556, 674, 754, 947
MlyI GAGTC 3 cut(s) 461, 608, 867
MmeI TCCRAC 4 cut(s) 155, 383, 423, 1171
MseI TTAA 4 cut(s) 29, 534, 1019, 1164
MspA1I CMGCKG 1 cut(s) 1049
MspI CCGG 6 cut(s) 175, 297, 697, 711, 726, 885
MspR9I CCNGG 3 cut(s) 697, 711, 885
NciI CCSGG 3 cut(s) 697, 711, 885
NcoI CCATGG 1 cut(s) 927
NdeII GATC 6 cut(s) 212, 315, 373, 1010, 1083, 1102
NlaIII CATG 6 cut(s) 81, 315, 811, 931, 1057, 1213
NlaIV GGNNCC 3 cut(s) 179, 317, 511
NmeAIII GCCGAG 1 cut(s) 544
NmuCI GTSAC 4 cut(s) 273, 464, 482, 1276
NspI RCATGY 3 cut(s) 811, 1057, 1213
PaeI GCATGC 2 cut(s) 811, 1213
PaqCI CACCTGC 1 cut(s) 899
PciI ACATGT 1 cut(s) 1053
PfeI GAWTC 7 cut(s) 580, 631, 814, 858, 935, 1180, 1194
PflMI CCANNNNNTGG 1 cut(s) 1078
PkrI GCNGC 1 cut(s) 1222
PleI GAGTC 3 cut(s) 461, 607, 867
PpsI GAGTC 3 cut(s) 461, 607, 867
Ppu21I YACGTR 1 cut(s) 1033
PscI ACATGT 1 cut(s) 1053
Psp1406I AACGTT 1 cut(s) 1242
PspEI GGTNACC 1 cut(s) 1067
PspN4I GGNNCC 3 cut(s) 179, 317, 511
PsuI RGATCY 1 cut(s) 315
PvuII CAGCTG 1 cut(s) 1049
RsaI GTAC 3 cut(s) 203, 840, 1037
RsaNI GTAC 3 cut(s) 202, 839, 1036
SalI GTCGAC 1 cut(s) 962
SaqAI TTAA 4 cut(s) 29, 534, 1019, 1164
SatI GCNGC 1 cut(s) 1221
Sau3AI GATC 6 cut(s) 212, 315, 373, 1010, 1083, 1102
SchI GAGTC 3 cut(s) 461, 608, 867
ScrFI CCNGG 3 cut(s) 697, 711, 885
SfaNI GCATC 1 cut(s) 895
SphI GCATGC 2 cut(s) 811, 1213
Sse9I AATT 6 cut(s) 435, 542, 556, 674, 754, 947
SsiI CCGC 1 cut(s) 188
SspMI CTAG 4 cut(s) 284, 432, 818, 1224
StyD4I CCNGG 3 cut(s) 695, 709, 883
StyI CCWWGG 1 cut(s) 927
TaaI ACNGT 8 cut(s) 476, 686, 707, 838, 1040, 1092, 1187, 1203
TaiI ACGT 7 cut(s) 368, 461, 777, 969, 1035, 1170, 1245
TaqI TCGA 4 cut(s) 470, 963, 1043, 1076
TasI AATT 6 cut(s) 435, 542, 556, 674, 754, 947
TfiI GAWTC 7 cut(s) 580, 631, 814, 858, 935, 1180, 1194
Tru1I TTAA 4 cut(s) 29, 534, 1019, 1164
Tru9I TTAA 4 cut(s) 29, 534, 1019, 1164
TscAI CASTG 2 cut(s) 841, 1190
TseFI GTSAC 4 cut(s) 273, 464, 482, 1276
TseI GCWGC 1 cut(s) 1220
Tsp45I GTSAC 4 cut(s) 273, 464, 482, 1276
TspDTI ATGAA 3 cut(s) 378, 644, 1235
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 2 cut(s) 841, 1190
Van91I CCANNNNNTGG 1 cut(s) 1078
XapI RAATTY 6 cut(s) 435, 542, 556, 674, 754, 947
XbaI TCTAGA 1 cut(s) 817
XceI RCATGY 3 cut(s) 811, 1057, 1213
XmiI GTMKAC 2 cut(s) 5, 963
XspI CTAG 4 cut(s) 284, 432, 818, 1224
ZraI GACGTC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.