MD17G1268100.v1.1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015933
Physical Location & Seq
Forward (+)
32800575 .. 32802093
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1268100.v1.1.491

Sequence Viewer

Length: 1422 bp
ATGTATCTCTCTCCCAAAACCATGTTCTTAAATCTTCTCATCTTCTTCTTTCTCGTCTCTCCTTCTCTTTCGGTTTCGATTCCGAAAGATCAGAACAAGCTCCAAAACAAGTTGAAGAACGACACTAGTGCCTTTTCTCTCTCTTTCCCTCTTACTACTTCTCCACTTTCTCTCTCTGCAAATCCAAACACGTCCAAAACTTTCTCTGTCGTTTCAAACTACAAGCAAAACCCTAGATCAAGACCTACTACTACTGCTGCTACTGCTGGTGGTGCTACAACAAAAACACCATCGTACAACTACAAGCTTTCGTTCAAGTATTCGATGGCTCTCATCGTTTCTCTCCCCATCGGAACTCCTCCGCAGATCCAACAGATGGTTTTGGACACCGGAAGCCAACTCTCATGGATACAGTGCCACAGCACGACCCCCAAACCACGCCCACCACCTCCTCCCATGGCATCGTTTGACCCTTCTCTCTCTTCCACCTTCTCTGTTTTGCCTTGCACTCACCCTATTTGCAAACCCCGGGTTCCCGATTTCACCCTCCCGACCTCTTGTGACCAAAACAGCCTCTGCCACTACTCCTACTTCTATGCCGACGGTACTCTCGCTGAGGGCAATCTCGTCCGAGAAAAATTTACCTTTTCTCGTTCCATTAGTACCCCTCCCTTGACTCTTGGTTGCGCTAAGGACACCAGTGACACCAAGGGTATTTTGGGTATGAATGTTGGAAGGCTATCATTTGCTTCCCAAGCTAAAATTACCAAGTTCTCCTATTGCGTACCTAACCGACCGGCTCAAACCGGGTCCAATATGCCGACCGGCAGTTTTTACTTAGGCCATAACCCGAGCTCCGCGGGATTCCAATATGTTGACCTTTTGACTTTTAGTCAAAGTCAGCGCATGCCGAATCTGGACCCCCTTGCCTATACAGTTGTAATGGTAGGGATAAGAGTTGGAGGGAAAATGTTGAAAATTCAACCCTCTGTGTTCCGACCCGATGCGAGCGGGGCGGGTCAGACCATGATTGATTCAGGGTCCGAGTTCACTTATTTTGTGGACGAGGCGTATAGTAAGGTGAGGGAAGAGATTGTGAGATTGGCGGGACCAAAGTTAAAGAAGGGCTACATGTACGCAGGTGTGTCCGACATGTGTTTTGATGGCGATGGTGTGGAGATCGGACGATTGATAGGGGACATGGCGTTTGTGTTTGATAAAGGTGTGGAGATTGTGACGCCGAAAGAACAAATTCTTGCCGATGTAGGCGGCGGAGTCCGGTGCGTGGCAATCGGACAGTCCAACATGCTTGGTGCCGCGAGCAATATAATCGGGAATTTTCATCAGAGGAATCAATGGGTTGAGTTTGATCTGGCAAATCGTAGAGTTGGGTTCGGTAGGGCTGATTGTAGTAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

474

Amino Acids

51.47

Weight (kDa)

9.21

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 112 - 270 5.8e-33 Xylanase inhibitor N-terminal
Asp PF00026 115 - 467 4.1e-13 Eukaryotic aspartyl protease
TAXi_C PF14541 310 - 466 8.5e-32 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66180 AT5G37540
fragaria_vesca FvH4_1g30150
malus_domestica MD09G1270000.v1.1 MD17G1268100.v1.1
prunus_persica Prupe.3G165900_v2.0.a1
pyrus_communis pycom09g18120
rosa_chinensis RchiOBHm_Chr3g0491651
rosa_laevigata RLG00000022831
rosa_rugosa Rorug03G0250700.1
rosa_samantha Rh3AG299500 Rh3BG336200 Rh3CG332500 Rh3DG334100
rosa_wichuraiana Rw3G026460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1130
Acc36I ACCTGC 1 cut(s) 1130
AccB1I GGYRCC 1 cut(s) 1313
AccB7I CCANNNNNTGG 1 cut(s) 376
AccBSI CCGCTC 1 cut(s) 1011
AccII CGCG 2 cut(s) 860, 1319
AciI CCGC 9 cut(s) 362, 858, 860, 1011, 1016, 1106, 1269, 1272, 1317
AclWI GGATC 1 cut(s) 361
AcsI RAATTY 4 cut(s) 638, 978, 1251, 1336
AcyI GRCGYC 1 cut(s) 1238
AfaI GTAC 5 cut(s) 296, 607, 664, 786, 1136
AfiI CCNNNNNNNGG 2 cut(s) 376, 1285
AflIII ACRYGT 3 cut(s) 189, 1131, 1152
AgsI TTSAA 5 cut(s) 115, 216, 316, 976, 983
AhdI GACNNNNNGTC 1 cut(s) 891
AhlI ACTAGT 1 cut(s) 125
AjiI CACGTC 1 cut(s) 192
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 4 cut(s) 100, 307, 758, 855
AluI AGCT 4 cut(s) 100, 307, 758, 855
Alw21I GWGCWC 1 cut(s) 857
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 1 cut(s) 361
AlwNI CAGNNNCTG 1 cut(s) 576
Ama87I CYCGRG 2 cut(s) 528, 850
AoxI GGCC 1 cut(s) 841
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 4 cut(s) 638, 978, 1251, 1336
ArsI GACNNNNNNTTYG 4 cut(s) 1142, 1174, 1190, 1222
Asp700I GAANNNNTTC 1 cut(s) 1251
AspLEI GCGC 2 cut(s) 689, 906
AspS9I GGNCC 4 cut(s) 810, 919, 1041, 1109
AsuC2I CCSGG 3 cut(s) 529, 530, 808
AsuHPI GGTGA 3 cut(s) 503, 535, 1093
AvaI CYCGRG 2 cut(s) 528, 850
AvaII GGWCC 4 cut(s) 810, 919, 1041, 1109
BanI GGYRCC 1 cut(s) 1313
BanII GRGCYC 1 cut(s) 857
Bbv12I GWGCWC 1 cut(s) 857
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 1 cut(s) 244
BccI CCATC 6 cut(s) 298, 319, 356, 370, 1157, 1163
BcgI CGANNNNNNTGC 4 cut(s) 110, 144, 1312, 1346
BciVI GTATCC 1 cut(s) 402
BcnI CCSGG 3 cut(s) 529, 530, 808
BcoDI GTCTC 1 cut(s) 61
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 2 cut(s) 126, 234
BfuAI ACCTGC 1 cut(s) 1130
BfuI GTATCC 1 cut(s) 402
BisI GCNGC 3 cut(s) 258, 1270, 1317
BlsI GCNGC 3 cut(s) 259, 1271, 1318
Bme1390I CCNGG 3 cut(s) 529, 530, 808
Bme18I GGWCC 4 cut(s) 810, 919, 1041, 1109
BmeRI GACNNNNNGTC 1 cut(s) 891
BmeT110I CYCGRG 2 cut(s) 528, 850
BmgBI CACGTC 1 cut(s) 192
BmgT120I GGNCC 4 cut(s) 810, 919, 1041, 1109
BmiI GGNNCC 6 cut(s) 534, 811, 921, 1042, 1110, 1315
BmrFI CCNGG 3 cut(s) 529, 530, 808
BmsI GCATC 2 cut(s) 470, 994
Bpu10I CCTNAGC 2 cut(s) 615, 690
BpuMI CCSGG 3 cut(s) 529, 530, 808
BsaHI GRCGYC 1 cut(s) 1238
BsaJI CCNNGG 5 cut(s) 456, 527, 528, 708, 858
BsaWI WCCGGW 2 cut(s) 389, 1278
BsaXI ACNNNNNCTCC 4 cut(s) 145, 175, 839, 869
Bsc4I CCNNNNNNNGG 2 cut(s) 376, 1285
Bse118I RCCGGY 2 cut(s) 796, 824
Bse1I ACTGG 1 cut(s) 699
BseDI CCNNGG 5 cut(s) 456, 527, 528, 708, 858
BseLI CCNNNNNNNGG 2 cut(s) 376, 1285
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 1 cut(s) 699
BseRI GAGGAG 2 cut(s) 348, 441
BseXI GCAGC 1 cut(s) 244
Bsh1236I CGCG 2 cut(s) 860, 1319
Bsh1285I CGRYCG 2 cut(s) 797, 825
BshFI GGCC 1 cut(s) 843
BshNI GGYRCC 1 cut(s) 1313
BsiEI CGRYCG 2 cut(s) 797, 825
BsiHKAI GWGCWC 1 cut(s) 857
BsiHKCI CYCGRG 2 cut(s) 528, 850
BsiSI CCGG 6 cut(s) 390, 529, 797, 807, 825, 1279
BslFI GGGAC 2 cut(s) 1122, 1211
BslI CCNNNNNNNGG 2 cut(s) 376, 1285
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsmFI GGGAC 2 cut(s) 1122, 1211
BsnI GGCC 1 cut(s) 843
BsoBI CYCGRG 2 cut(s) 528, 850
Bsp1286I GDGCHC 1 cut(s) 857
Bsp143I GATC 6 cut(s) 88, 236, 366, 1179, 1369, 1415
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 9 cut(s) 362, 858, 860, 1011, 1016, 1106, 1269, 1272, 1317
BspANI GGCC 1 cut(s) 843
BspCNI CTCAG 1 cut(s) 607
BspFNI CGCG 2 cut(s) 860, 1319
BspHI TCATGA 1 cut(s) 1418
BspLI GGNNCC 6 cut(s) 534, 811, 921, 1042, 1110, 1315
BspMI ACCTGC 1 cut(s) 1130
BspPI GGATC 1 cut(s) 361
BspT107I GGYRCC 1 cut(s) 1313
BsrBI CCGCTC 1 cut(s) 1011
BsrFI RCCGGY 2 cut(s) 796, 824
BsrI ACTGG 1 cut(s) 699
BssAI RCCGGY 2 cut(s) 796, 824
BssECI CCNNGG 5 cut(s) 456, 527, 528, 708, 858
BssMI GATC 6 cut(s) 88, 236, 366, 1179, 1369, 1415
BssNI GRCGYC 1 cut(s) 1238
BssT1I CCWWGG 2 cut(s) 456, 708
Bst4CI ACNGT 4 cut(s) 414, 605, 937, 1299
Bst6I CTCTTC 2 cut(s) 487, 1083
BstACI GRCGYC 1 cut(s) 1238
BstC8I GCNNGC 3 cut(s) 908, 1009, 1321
BstDEI CTNAG 3 cut(s) 615, 690, 838
BstDSI CCRYGG 2 cut(s) 456, 858
BstFNI CGCG 2 cut(s) 860, 1319
BstHHI GCGC 2 cut(s) 689, 906
BstKTI GATC 6 cut(s) 91, 239, 369, 1182, 1372, 1418
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 6 cut(s) 88, 236, 366, 1179, 1369, 1415
BstMCI CGRYCG 2 cut(s) 797, 825
BstMWI GCNNNNNNNGC 4 cut(s) 263, 272, 755, 1013
BstNSI RCATGY 4 cut(s) 910, 1135, 1156, 1309
BstSCI CCNGG 3 cut(s) 527, 528, 806
BstUI CGCG 2 cut(s) 860, 1319
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
BsuI GTATCC 1 cut(s) 402
BsuRI GGCC 1 cut(s) 843
BtgI CCRYGG 2 cut(s) 456, 858
BtgZI GCGATG 1 cut(s) 1182
BtrI CACGTC 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 419, 706
BveI ACCTGC 1 cut(s) 1130
Cac8I GCNNGC 3 cut(s) 908, 1009, 1321
CaiI CAGNNNCTG 1 cut(s) 576
CciI TCATGA 1 cut(s) 1418
CfoI GCGC 2 cut(s) 689, 906
Cfr10I RCCGGY 2 cut(s) 796, 824
Cfr13I GGNCC 4 cut(s) 810, 919, 1041, 1109
Cfr42I CCGCGG 1 cut(s) 861
Cfr9I CCCGGG 1 cut(s) 528
CseI GACGC 1 cut(s) 1246
Csp6I GTAC 5 cut(s) 295, 606, 663, 785, 1135
CviQI GTAC 5 cut(s) 295, 606, 663, 785, 1135
DdeI CTNAG 3 cut(s) 615, 690, 838
DpnI GATC 6 cut(s) 90, 238, 368, 1181, 1371, 1417
DpnII GATC 6 cut(s) 88, 236, 366, 1179, 1369, 1415
DriI GACNNNNNGTC 1 cut(s) 891
Eam1104I CTCTTC 2 cut(s) 487, 1083
Eam1105I GACNNNNNGTC 1 cut(s) 891
EarI CTCTTC 2 cut(s) 487, 1083
EciI GGCGGA 1 cut(s) 1287
Ecl136II GAGCTC 1 cut(s) 855
Eco130I CCWWGG 2 cut(s) 456, 708
Eco24I GRGCYC 1 cut(s) 857
Eco47I GGWCC 4 cut(s) 810, 919, 1041, 1109
Eco53kI GAGCTC 1 cut(s) 855
Eco88I CYCGRG 2 cut(s) 528, 850
EcoICRI GAGCTC 1 cut(s) 855
EcoT14I CCWWGG 2 cut(s) 456, 708
EcoT38I GRGCYC 1 cut(s) 857
ErhI CCWWGG 2 cut(s) 456, 708
Esp3I CGTCTC 1 cut(s) 61
FaqI GGGAC 2 cut(s) 1122, 1211
FauI CCCGC 4 cut(s) 853, 1004, 1009, 1099
Fnu4HI GCNGC 3 cut(s) 258, 1270, 1317
FriOI GRGCYC 1 cut(s) 857
Fsp4HI GCNGC 3 cut(s) 258, 1270, 1317
FspBI CTAG 2 cut(s) 126, 234
GlaI GCGC 2 cut(s) 688, 905
GluI GCNGC 3 cut(s) 258, 1270, 1317
HaeIII GGCC 1 cut(s) 843
HapII CCGG 6 cut(s) 390, 529, 797, 807, 825, 1279
HgaI GACGC 1 cut(s) 1246
HhaI GCGC 2 cut(s) 689, 906
Hin1I GRCGYC 1 cut(s) 1238
Hin6I GCGC 2 cut(s) 687, 904
HinP1I GCGC 2 cut(s) 687, 904
HincII GTYRAC 1 cut(s) 877
HindII GTYRAC 1 cut(s) 877
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 7 cut(s) 79, 676, 864, 913, 1034, 1275, 1351
HpaII CCGG 6 cut(s) 390, 529, 797, 807, 825, 1279
HphI GGTGA 3 cut(s) 503, 535, 1093
Hpy166II GTNNAC 3 cut(s) 877, 1050, 1063
Hpy188III TCNNGA 6 cut(s) 240, 536, 550, 917, 1333, 1419
Hpy8I GTNNAC 3 cut(s) 877, 1050, 1063
Hpy99I CGWCG 1 cut(s) 605
HpyAV CCTTC 5 cut(s) 72, 483, 499, 729, 1117
HpyCH4III ACNGT 4 cut(s) 414, 605, 937, 1299
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 3 cut(s) 179, 507, 522
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 272, 755, 1013
HpyF3I CTNAG 3 cut(s) 615, 690, 838
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 1238
HspAI GCGC 2 cut(s) 687, 904
KspI CCGCGG 1 cut(s) 861
Kzo9I GATC 6 cut(s) 88, 236, 366, 1179, 1369, 1415
LmnI GCTCC 2 cut(s) 105, 860
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 2 cut(s) 470, 994
MaeI CTAG 2 cut(s) 126, 234
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 3 cut(s) 560, 701, 1234
MalI GATC 6 cut(s) 90, 238, 368, 1181, 1371, 1417
MbiI CCGCTC 1 cut(s) 1011
MboI GATC 6 cut(s) 88, 236, 366, 1179, 1369, 1415
MboII GAAGA 6 cut(s) 26, 34, 37, 127, 474, 1100
MflI RGATCY 1 cut(s) 366
MhlI GDGCHC 1 cut(s) 857
MluCI AATT 5 cut(s) 638, 762, 978, 1251, 1336
MlyI GAGTC 2 cut(s) 670, 1284
MmeI TCCRAC 6 cut(s) 394, 712, 940, 1021, 1173, 1326
MroXI GAANNNNTTC 1 cut(s) 1251
MseI TTAA 2 cut(s) 29, 1118
MspA1I CMGCKG 1 cut(s) 860
MspI CCGG 6 cut(s) 390, 529, 797, 807, 825, 1279
MspR9I CCNGG 3 cut(s) 529, 530, 808
MvnI CGCG 2 cut(s) 860, 1319
MwoI GCNNNNNNNGC 4 cut(s) 263, 272, 755, 1013
NciI CCSGG 3 cut(s) 529, 530, 808
NcoI CCATGG 1 cut(s) 456
NdeII GATC 6 cut(s) 88, 236, 366, 1179, 1369, 1415
NlaIV GGNNCC 6 cut(s) 534, 811, 921, 1042, 1110, 1315
NmuCI GTSAC 3 cut(s) 560, 701, 1234
NspI RCATGY 4 cut(s) 910, 1135, 1156, 1309
PaeI GCATGC 1 cut(s) 910
PagI TCATGA 1 cut(s) 1418
PaqCI CACCTGC 1 cut(s) 1130
PciI ACATGT 2 cut(s) 1131, 1152
PdmI GAANNNNTTC 1 cut(s) 1251
PfeI GAWTC 5 cut(s) 79, 864, 913, 1034, 1351
PflMI CCANNNNNTGG 1 cut(s) 376
PkrI GCNGC 3 cut(s) 259, 1271, 1318
PleI GAGTC 2 cut(s) 670, 1283
PpsI GAGTC 2 cut(s) 670, 1283
PscI ACATGT 2 cut(s) 1131, 1152
Psp124BI GAGCTC 1 cut(s) 857
PspN4I GGNNCC 6 cut(s) 534, 811, 921, 1042, 1110, 1315
PspPI GGNCC 4 cut(s) 810, 919, 1041, 1109
PstNI CAGNNNCTG 1 cut(s) 576
PsuI RGATCY 1 cut(s) 366
RsaI GTAC 5 cut(s) 296, 607, 664, 786, 1136
RsaNI GTAC 5 cut(s) 295, 606, 663, 785, 1135
SacI GAGCTC 1 cut(s) 857
SacII CCGCGG 1 cut(s) 861
SaqAI TTAA 2 cut(s) 29, 1118
SatI GCNGC 3 cut(s) 258, 1270, 1317
Sau3AI GATC 6 cut(s) 88, 236, 366, 1179, 1369, 1415
Sau96I GGNCC 4 cut(s) 810, 919, 1041, 1109
SchI GAGTC 2 cut(s) 670, 1284
ScrFI CCNGG 3 cut(s) 529, 530, 808
SduI GDGCHC 1 cut(s) 857
SfaNI GCATC 2 cut(s) 470, 994
Sfr303I CCGCGG 1 cut(s) 861
SgrBI CCGCGG 1 cut(s) 861
SinI GGWCC 4 cut(s) 810, 919, 1041, 1109
SmaI CCCGGG 1 cut(s) 530
SpeI ACTAGT 1 cut(s) 125
SphI GCATGC 1 cut(s) 910
Sse9I AATT 5 cut(s) 638, 762, 978, 1251, 1336
SsiI CCGC 9 cut(s) 362, 858, 860, 1011, 1016, 1106, 1269, 1272, 1317
SspMI CTAG 2 cut(s) 126, 234
SstI GAGCTC 1 cut(s) 857
StyD4I CCNGG 3 cut(s) 527, 528, 806
StyI CCWWGG 2 cut(s) 456, 708
TaaI ACNGT 4 cut(s) 414, 605, 937, 1299
TaiI ACGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 77, 323
TasI AATT 5 cut(s) 638, 762, 978, 1251, 1336
TauI GCSGC 2 cut(s) 1272, 1319
TfiI GAWTC 5 cut(s) 79, 864, 913, 1034, 1351
Tru1I TTAA 2 cut(s) 29, 1118
Tru9I TTAA 2 cut(s) 29, 1118
TscAI CASTG 2 cut(s) 419, 706
TseFI GTSAC 3 cut(s) 560, 701, 1234
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 3 cut(s) 560, 701, 1234
TspDTI ATGAA 2 cut(s) 740, 1331
TspMI CCCGGG 1 cut(s) 528
TspRI CASTG 2 cut(s) 419, 706
Van91I CCANNNNNTGG 1 cut(s) 376
VpaK11BI GGWCC 4 cut(s) 810, 919, 1041, 1109
XapI RAATTY 4 cut(s) 638, 978, 1251, 1336
XceI RCATGY 4 cut(s) 910, 1135, 1156, 1309
XcmI CCANNNNNNNNNTGG 1 cut(s) 715
XmaI CCCGGG 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 1251
XspI CTAG 2 cut(s) 126, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.