FvH4_1g30150

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015933
Physical Location & Seq
Forward (+)
23836640 .. 23837713
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g30150.t1

Sequence Viewer

Length: 1074 bp
ATGGCTCCCGTCGTCTCCCTCCCCATAGGAACACCTCCCCAGACGCAGCAAATGGTTCTCGACACCGGAAGCCAGCTGTCCTGGATTCAGTGCCACAAGAAGCTCCCCCGGCCTTCTCCTCCGGCACCCATGTTCGACCCTTCCCTCTCCTCCACCTTCTCCGTCCTCCCTTGCAACCACCCCATCTGCAAGCCACGAGTTCCCGACTTTACCCTCCCCACCTCCTGCGACCAGAACCGCCTCTGCCACTACTCCTACTTCTACGCCGACGGCACTCTCGCCGAGGGCAATCTCGTCAGAGAAAAGTTCACCTTCTCCAGGGCCACCAGCACCCCGCCCTTGACTCTCGGTTGCGCCAAGGACACCAGTGACACCAAGGGCATTCTGGGCATGAATCTCGGCCGCTTGTCCTTTCCTTCCCAAGCCAAAATTACCAAATTCTCCTACTGCATACCGGCTCGAACCGGGTCCGCTTTCCCGACCGGCGCTTTTTACCTCGGTAATAATCCCAACTCGGCGGCTTTTCGTTACGTTGACCTGTTGACATTCGGTCAAAGTCAACGCATGCCGAATTTGGACCCCCTGGCCTACACGGTGGTGATGGTTGGGGTGAGGATAGGCGGGAAGAGGCTGAGCATTTTGCCTTCGGTGTTCCGGCCCGACGCGAGCGGGTCGGGTCAGACCATGGTCGACTCCGGATCCGAGTTGACTTATTTTGTGGACGAGGCATACAAGAAAGTGAAGGAAGAGATAGTGAGATTGGTAGGGCCCAAGTTGAAGAAGGGGTACGTGTACGGTAACGTGGCCGACATGTGTTTCGATAGCAACATCGGACCGTTGATAGGGGACATGGTGCTGGAGTTCGATAAAGGAGCGGAGATTGTGATAGGCAAAGAACAAATGTTACACAATGTGGAGGGCAAGGTGTGGTGCGTGGCGATCGGGCGTTCTGACATGATCGGCGCGGCGAGTAACATAATCGGAAACGTTCATCAGCAGAATCATTGGGTAGAGTTTGATATAGGAAACCGTAGAGTAGGTTTTGGTAAGGCGGATTGTGCTAGATCGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

358

Amino Acids

38.93

Weight (kDa)

8.73

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 5 - 167 1.3e-35 Xylanase inhibitor N-terminal
Asp PF00026 88 - 350 5.1e-07 Eukaryotic aspartyl protease
TAXi_C PF14541 196 - 349 1.3e-32 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66180 AT5G37540
fragaria_vesca FvH4_1g30150
malus_domestica MD09G1270000.v1.1 MD17G1268100.v1.1
prunus_persica Prupe.3G165900_v2.0.a1
pyrus_communis pycom09g18120
rosa_chinensis RchiOBHm_Chr3g0491651
rosa_laevigata RLG00000022831
rosa_rugosa Rorug03G0250700.1
rosa_samantha Rh3AG299500 Rh3BG336200 Rh3CG332500 Rh3DG334100
rosa_wichuraiana Rw3G026460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccBSI CCGCTC 2 cut(s) 669, 875
AccI GTMKAC 1 cut(s) 690
AccII CGCG 2 cut(s) 665, 965
AccIII TCCGGA 1 cut(s) 695
AclI AACGTT 1 cut(s) 987
AclWI GGATC 2 cut(s) 693, 706
AcoI YGGCCR 2 cut(s) 400, 804
AcsI RAATTY 2 cut(s) 437, 571
AdeI CACNNNGTG 1 cut(s) 913
AfaI GTAC 2 cut(s) 788, 794
AfiI CCNNNNNNNGG 2 cut(s) 318, 842
AflIII ACRYGT 2 cut(s) 789, 810
AgsI TTSAA 1 cut(s) 778
AhdI GACNNNNNGTC 1 cut(s) 549
AjnI CCWGG 3 cut(s) 80, 317, 582
AleI CACNNNNGTG 1 cut(s) 596
AluBI AGCT 2 cut(s) 76, 103
AluI AGCT 2 cut(s) 76, 103
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 2 cut(s) 693, 706
Aor13HI TCCGGA 1 cut(s) 695
AoxI GGCC 7 cut(s) 110, 321, 400, 585, 656, 767, 804
ApaI GGGCCC 1 cut(s) 771
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 2 cut(s) 437, 571
ArsI GACNNNNNNTTYG 2 cut(s) 800, 832
AspLEI GCGC 3 cut(s) 356, 488, 965
AspS9I GGNCC 7 cut(s) 321, 468, 577, 657, 767, 768, 833
AsuC2I CCSGG 2 cut(s) 109, 466
AsuHPI GGTGA 3 cut(s) 301, 610, 622
AvaII GGWCC 3 cut(s) 468, 577, 833
BaeGI GKGCMC 1 cut(s) 771
BamHI GGATCC 1 cut(s) 698
BanI GGYRCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 771
BarI GAAGNNNNNNTAC 2 cut(s) 770, 802
BauI CACGAG 1 cut(s) 195
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 191, 595
BceAI ACGGC 1 cut(s) 286
BcgI CGANNNNNNTGC 2 cut(s) 379, 413
BciT130I CCWGG 3 cut(s) 82, 319, 584
BcnI CCSGG 2 cut(s) 109, 466
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 1 cut(s) 1062
BfoI RGCGCY 1 cut(s) 489
BisI GCNGC 4 cut(s) 47, 403, 519, 966
BlpI GCTNAGC 1 cut(s) 632
BlsI GCNGC 4 cut(s) 48, 404, 520, 967
Bme1390I CCNGG 5 cut(s) 82, 109, 319, 466, 584
Bme18I GGWCC 3 cut(s) 468, 577, 833
BmeRI GACNNNNNGTC 1 cut(s) 549
BmgT120I GGNCC 7 cut(s) 321, 468, 577, 657, 767, 768, 833
BmiI GGNNCC 6 cut(s) 6, 126, 469, 579, 700, 769
BmrFI CCNGG 5 cut(s) 82, 109, 319, 466, 584
BoxI GACNNNNGTC 1 cut(s) 686
BpmI CTGGAG 2 cut(s) 301, 878
Bpu1102I GCTNAGC 1 cut(s) 632
BpuMI CCSGG 2 cut(s) 109, 466
BsaAI YACGTR 1 cut(s) 790
BsaJI CCNNGG 8 cut(s) 107, 282, 318, 357, 375, 496, 582, 684
BsaWI WCCGGW 2 cut(s) 65, 695
Bsc4I CCNNNNNNNGG 2 cut(s) 318, 842
Bse118I RCCGGY 2 cut(s) 454, 482
Bse1I ACTGG 1 cut(s) 366
BseAI TCCGGA 1 cut(s) 695
BseBI CCWGG 3 cut(s) 82, 319, 584
BseDI CCNNGG 8 cut(s) 107, 282, 318, 357, 375, 496, 582, 684
BseLI CCNNNNNNNGG 2 cut(s) 318, 842
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 1 cut(s) 366
BseRI GAGGAG 2 cut(s) 108, 139
BseSI GKGCMC 1 cut(s) 771
BseX3I CGGCCG 1 cut(s) 400
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 2 cut(s) 665, 965
Bsh1285I CGRYCG 3 cut(s) 403, 483, 942
BshFI GGCC 7 cut(s) 112, 323, 402, 587, 658, 769, 806
BshNI GGYRCC 1 cut(s) 124
BsiEI CGRYCG 3 cut(s) 403, 483, 942
BsiSI CCGG 8 cut(s) 66, 109, 122, 455, 465, 483, 655, 696
BslFI GGGAC 1 cut(s) 860
BslI CCNNNNNNNGG 2 cut(s) 318, 842
BsmAI GTCTC 1 cut(s) 19
BsmBI CGTCTC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 860
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 7 cut(s) 112, 323, 402, 587, 658, 769, 806
Bsp120I GGGCCC 1 cut(s) 767
Bsp1286I GDGCHC 1 cut(s) 771
Bsp13I TCCGGA 1 cut(s) 695
Bsp143I GATC 4 cut(s) 698, 939, 957, 1064
Bsp1720I GCTNAGC 1 cut(s) 632
Bsp19I CCATGG 1 cut(s) 684
BspANI GGCC 7 cut(s) 112, 323, 402, 587, 658, 769, 806
BspCNI CTCAG 1 cut(s) 624
BspEI TCCGGA 1 cut(s) 695
BspFNI CGCG 2 cut(s) 665, 965
BspLI GGNNCC 6 cut(s) 6, 126, 469, 579, 700, 769
BspPI GGATC 2 cut(s) 693, 706
BspT107I GGYRCC 1 cut(s) 124
BsrBI CCGCTC 2 cut(s) 669, 875
BsrFI RCCGGY 2 cut(s) 454, 482
BsrI ACTGG 1 cut(s) 366
BssAI RCCGGY 2 cut(s) 454, 482
BssECI CCNNGG 8 cut(s) 107, 282, 318, 357, 375, 496, 582, 684
BssMI GATC 4 cut(s) 698, 939, 957, 1064
BssSI CACGAG 1 cut(s) 195
BssT1I CCWWGG 3 cut(s) 357, 375, 684
Bst2BI CACGAG 1 cut(s) 195
Bst2UI CCWGG 3 cut(s) 82, 319, 584
Bst4CI ACNGT 4 cut(s) 595, 797, 837, 1031
Bst6I CTCTTC 2 cut(s) 620, 741
BstBAI YACGTR 1 cut(s) 790
BstC8I GCNNGC 4 cut(s) 74, 191, 566, 667
BstDEI CTNAG 1 cut(s) 632
BstDSI CCRYGG 1 cut(s) 684
BstENI CCTNNNNNAGG 1 cut(s) 316
BstFNI CGCG 2 cut(s) 665, 965
BstH2I RGCGCY 1 cut(s) 489
BstHHI GCGC 3 cut(s) 356, 488, 965
BstKTI GATC 4 cut(s) 701, 942, 960, 1067
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 4 cut(s) 698, 939, 957, 1064
BstMCI CGRYCG 3 cut(s) 403, 483, 942
BstMWI GCNNNNNNNGC 3 cut(s) 109, 387, 1058
BstNI CCWGG 3 cut(s) 82, 319, 584
BstNSI RCATGY 2 cut(s) 568, 814
BstPAI GACNNNNGTC 1 cut(s) 686
BstSCI CCNGG 5 cut(s) 80, 107, 317, 464, 582
BstSLI GKGCMC 1 cut(s) 771
BstUI CGCG 2 cut(s) 665, 965
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 698
BstYI RGATCY 1 cut(s) 698
BstZI CGGCCG 1 cut(s) 400
BsuRI GGCC 7 cut(s) 112, 323, 402, 587, 658, 769, 806
BtgI CCRYGG 1 cut(s) 684
BtsIMutI CAGTG 2 cut(s) 95, 373
Cac8I GCNNGC 4 cut(s) 74, 191, 566, 667
CfoI GCGC 3 cut(s) 356, 488, 965
Cfr10I RCCGGY 2 cut(s) 454, 482
Cfr13I GGNCC 7 cut(s) 321, 468, 577, 657, 767, 768, 833
CpoI CGGWCCG 1 cut(s) 833
CseI GACGC 2 cut(s) 52, 671
Csp6I GTAC 2 cut(s) 787, 793
CspI CGGWCCG 1 cut(s) 833
CviAII CATG 7 cut(s) 130, 391, 565, 685, 811, 850, 955
CviQI GTAC 2 cut(s) 787, 793
DdeI CTNAG 1 cut(s) 632
DpnI GATC 4 cut(s) 700, 941, 959, 1066
DpnII GATC 4 cut(s) 698, 939, 957, 1064
DraIII CACNNNGTG 1 cut(s) 913
DriI GACNNNNNGTC 1 cut(s) 549
EaeI YGGCCR 2 cut(s) 400, 804
EagI CGGCCG 1 cut(s) 400
Eam1104I CTCTTC 2 cut(s) 620, 741
Eam1105I GACNNNNNGTC 1 cut(s) 549
EarI CTCTTC 2 cut(s) 620, 741
EciI GGCGGA 1 cut(s) 1067
EclXI CGGCCG 1 cut(s) 400
Eco130I CCWWGG 3 cut(s) 357, 375, 684
Eco24I GRGCYC 1 cut(s) 771
Eco47I GGWCC 3 cut(s) 468, 577, 833
Eco52I CGGCCG 1 cut(s) 400
EcoNI CCTNNNNNAGG 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 767
EcoRII CCWGG 3 cut(s) 80, 317, 582
EcoT14I CCWWGG 3 cut(s) 357, 375, 684
EcoT38I GRGCYC 1 cut(s) 771
ErhI CCWWGG 3 cut(s) 357, 375, 684
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 7 cut(s) 133, 394, 568, 688, 814, 853, 958
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 1 cut(s) 860
FatI CATG 7 cut(s) 129, 390, 564, 684, 810, 849, 954
FauI CCCGC 3 cut(s) 342, 614, 662
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 4 cut(s) 47, 403, 519, 966
FriOI GRGCYC 1 cut(s) 771
Fsp4HI GCNGC 4 cut(s) 47, 403, 519, 966
FspBI CTAG 1 cut(s) 1062
GlaI GCGC 3 cut(s) 355, 487, 964
GluI GCNGC 4 cut(s) 47, 403, 519, 966
GsuI CTGGAG 2 cut(s) 301, 878
HaeII RGCGCY 1 cut(s) 489
HaeIII GGCC 7 cut(s) 112, 323, 402, 587, 658, 769, 806
HapII CCGG 8 cut(s) 66, 109, 122, 455, 465, 483, 655, 696
HgaI GACGC 2 cut(s) 52, 671
HhaI GCGC 3 cut(s) 356, 488, 965
Hin1II CATG 7 cut(s) 133, 394, 568, 688, 814, 853, 958
Hin6I GCGC 3 cut(s) 354, 486, 963
HinP1I GCGC 3 cut(s) 354, 486, 963
HincII GTYRAC 5 cut(s) 535, 543, 560, 691, 708
HindII GTYRAC 5 cut(s) 535, 543, 560, 691, 708
HinfI GANTC 5 cut(s) 85, 343, 394, 692, 1000
HpaII CCGG 8 cut(s) 66, 109, 122, 455, 465, 483, 655, 696
HphI GGTGA 3 cut(s) 301, 610, 622
Hpy166II GTNNAC 8 cut(s) 309, 535, 543, 560, 691, 708, 721, 793
Hpy188I TCNGA 6 cut(s) 299, 681, 703, 833, 952, 983
Hpy188III TCNNGA 4 cut(s) 59, 203, 478, 696
Hpy8I GTNNAC 8 cut(s) 309, 535, 543, 560, 691, 708, 721, 793
Hpy99I CGWCG 3 cut(s) 14, 272, 665
HpyAV CCTTC 8 cut(s) 123, 150, 166, 322, 426, 654, 736, 775
HpyCH4III ACNGT 4 cut(s) 595, 797, 837, 1031
HpyCH4IV ACGT 4 cut(s) 531, 789, 801, 987
HpyCH4V TGCA 3 cut(s) 174, 189, 450
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 387, 1058
HpyF3I CTNAG 1 cut(s) 632
HpySE526I ACGT 4 cut(s) 531, 789, 801, 987
Hsp92II CATG 7 cut(s) 133, 394, 568, 688, 814, 853, 958
HspAI GCGC 3 cut(s) 354, 486, 963
Kpn2I TCCGGA 1 cut(s) 695
Kzo9I GATC 4 cut(s) 698, 939, 957, 1064
LmnI GCTCC 3 cut(s) 10, 108, 872
Lsp1109I GCAGC 1 cut(s) 58
MaeI CTAG 1 cut(s) 1062
MaeII ACGT 4 cut(s) 531, 789, 801, 987
MaeIII GTNAC 5 cut(s) 368, 527, 797, 903, 971
MalI GATC 4 cut(s) 700, 941, 959, 1066
MbiI CCGCTC 2 cut(s) 669, 875
MboI GATC 4 cut(s) 698, 939, 957, 1064
MboII GAAGA 3 cut(s) 637, 758, 790
MflI RGATCY 1 cut(s) 698
MhlI GDGCHC 1 cut(s) 771
MluCI AATT 3 cut(s) 429, 437, 571
MlyI GAGTC 2 cut(s) 337, 686
MroI TCCGGA 1 cut(s) 695
MslI CAYNNNNRTG 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 8 cut(s) 66, 109, 122, 455, 465, 483, 655, 696
MspR9I CCNGG 5 cut(s) 82, 109, 319, 466, 584
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 3 cut(s) 82, 319, 584
MvnI CGCG 2 cut(s) 665, 965
MwoI GCNNNNNNNGC 3 cut(s) 109, 387, 1058
NciI CCSGG 2 cut(s) 109, 466
NcoI CCATGG 1 cut(s) 684
NdeII GATC 4 cut(s) 698, 939, 957, 1064
NlaIII CATG 7 cut(s) 133, 394, 568, 688, 814, 853, 958
NlaIV GGNNCC 6 cut(s) 6, 126, 469, 579, 700, 769
NmeAIII GCCGAG 3 cut(s) 307, 378, 494
NmuCI GTSAC 1 cut(s) 368
NspI RCATGY 2 cut(s) 568, 814
OliI CACNNNNGTG 1 cut(s) 596
PaeI GCATGC 1 cut(s) 568
PciI ACATGT 1 cut(s) 810
PctI GAATGC 1 cut(s) 381
PfeI GAWTC 3 cut(s) 85, 394, 1000
PfoI TCCNGGA 1 cut(s) 80
PkrI GCNGC 4 cut(s) 48, 404, 520, 967
Ple19I CGATCG 1 cut(s) 942
PleI GAGTC 2 cut(s) 337, 686
PpsI GAGTC 2 cut(s) 337, 686
Ppu21I YACGTR 1 cut(s) 790
PscI ACATGT 1 cut(s) 810
PshAI GACNNNNGTC 1 cut(s) 686
Psp1406I AACGTT 1 cut(s) 987
Psp6I CCWGG 3 cut(s) 80, 317, 582
PspGI CCWGG 3 cut(s) 80, 317, 582
PspN4I GGNNCC 6 cut(s) 6, 126, 469, 579, 700, 769
PspOMI GGGCCC 1 cut(s) 767
PspPI GGNCC 7 cut(s) 321, 468, 577, 657, 767, 768, 833
PsrI GAACNNNNNNTAC 2 cut(s) 888, 920
PsuI RGATCY 1 cut(s) 698
PvuI CGATCG 1 cut(s) 942
PvuII CAGCTG 1 cut(s) 76
RsaI GTAC 2 cut(s) 788, 794
RsaNI GTAC 2 cut(s) 787, 793
RseI CAYNNNNRTG 1 cut(s) 596
Rsr2I CGGWCCG 1 cut(s) 833
RsrII CGGWCCG 1 cut(s) 833
SalI GTCGAC 1 cut(s) 689
SatI GCNGC 4 cut(s) 47, 403, 519, 966
Sau3AI GATC 4 cut(s) 698, 939, 957, 1064
Sau96I GGNCC 7 cut(s) 321, 468, 577, 657, 767, 768, 833
SchI GAGTC 2 cut(s) 337, 686
ScrFI CCNGG 5 cut(s) 82, 109, 319, 466, 584
SduI GDGCHC 1 cut(s) 771
SinI GGWCC 3 cut(s) 468, 577, 833
SmiMI CAYNNNNRTG 1 cut(s) 596
SphI GCATGC 1 cut(s) 568
Sse9I AATT 3 cut(s) 429, 437, 571
SspMI CTAG 1 cut(s) 1062
StyD4I CCNGG 5 cut(s) 80, 107, 317, 464, 582
StyI CCWWGG 3 cut(s) 357, 375, 684
TaaI ACNGT 4 cut(s) 595, 797, 837, 1031
TaiI ACGT 4 cut(s) 534, 792, 804, 990
TaqI TCGA 6 cut(s) 60, 135, 460, 690, 819, 864
TaqII GACCGA 1 cut(s) 539
TasI AATT 3 cut(s) 429, 437, 571
TauI GCSGC 3 cut(s) 405, 521, 968
TfiI GAWTC 3 cut(s) 85, 394, 1000
TscAI CASTG 2 cut(s) 95, 373
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 2 cut(s) 407, 980
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 2 cut(s) 95, 373
VpaK11BI GGWCC 3 cut(s) 468, 577, 833
XagI CCTNNNNNAGG 1 cut(s) 316
XapI RAATTY 2 cut(s) 437, 571
XceI RCATGY 2 cut(s) 568, 814
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 690
XspI CTAG 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.