Rh3CG332500

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0015933
Physical Location & Seq
Reverse (-)
36971286 .. 36972371
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG332500.1

Sequence Viewer

Length: 1086 bp
ATGGCTCCCATCGTCTCCCTCCCCATAGGCACACCTCCCCAGACGCAGCAGATGGTTCTCGACACCGGAAGCCAGCTGTCCTGGATTCAGTGCCACAAGAAGGTCCTGCGCAAGGCCCCGCCTCCGGCCTCCATATTCGACCCTTCCCTCTCCTCCACCTTCTCCGTCCTCCCTTGCAACCACCCTATCTGCAAACCCCGAGTTCCCGACTTTACCCTCCCCACCACCTGCGACCAGAACCGCCTCTGCCACTACTCCTACTTCTACGCCGACGGCACGCTCGCCGAGGGAAATCTCGTCAGAGAAAAGTTCACCTTCTCCAGGGCCACCAGCACCCCTCCCCTGACTCTGGGTTGCGCCCAGGACACCAGTGACACCAAGGGCATTTTGGGCATGAATCTCGGACGCTTGTCGTTTCCTTCCCAAGCCAAAATCACAAAGTTCTCCTACTGCATACCCTCCAGCCCGGCTCAAACCGGGTCCGCTTCGCCGACCGGGACTTTTTACCTCGGTAATAATCCCAACTCGGCAACTTTTCGATATGTTGACCTTTTGACTTTCGGTCAAAGTCAACGCATGCCTAATTTGGACCCCCTGGCCTACACGGTCGTGATGCTTGGGGTGAGGATAGGCGGCAACAAGTTGAGCATTTTACCTTCGGTGTTCCGGCCCGACGCGAGCGGGGCGGGTCAGACCATGATCGACTCCGGATGTGAGTTGACTTATTTCGTGGATGAGGCCTACAACAAAGTGAAGGAAGAGATTGTTAAATTGGTGGGGCCAAAATTAAAGAAGGGGTACGTGTATGCGAACGTCGCCGACATGTGTTTTGACAGTAACATCGGACCGTTGATAGGGGACATGGTGCTGGAGTTTGATAAAGGAGTGGAGATCGTGATAGCTAAAGAGCACATTTTACACAATGTGGAGGGCAAAGTGTGGTGCGTGGCGATCGGCCGGTCCGACATGATCGGCGCGGCCAGTAACATAATCGGCAACGTTCATCAGCAGAATCAGTGGGTGGAGTTTGATCTGGCAAATCGTAGAGTAGGGTTTGGTAAGGCGGATTGTAGCAGACCGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

361

Amino Acids

39.31

Weight (kDa)

8.23

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 4 - 161 3e-36 Xylanase inhibitor N-terminal
Asp PF00026 7 - 55 2.2e-06 Eukaryotic aspartyl protease
Asp PF00026 89 - 354 1.1e-06 Eukaryotic aspartyl protease
TAXi_C PF14541 200 - 353 2.3e-32 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66180 AT5G37540
fragaria_vesca FvH4_1g30150
malus_domestica MD09G1270000.v1.1 MD17G1268100.v1.1
prunus_persica Prupe.3G165900_v2.0.a1
pyrus_communis pycom09g18120
rosa_chinensis RchiOBHm_Chr3g0491651
rosa_laevigata RLG00000022831
rosa_rugosa Rorug03G0250700.1
rosa_samantha Rh3AG299500 Rh3BG336200 Rh3CG332500 Rh3DG334100
rosa_wichuraiana Rw3G026460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc16I TGCGCA 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 236
AccBSI CCGCTC 1 cut(s) 681
AccII CGCG 2 cut(s) 677, 977
AccIII TCCGGA 1 cut(s) 707
AciI CCGC 8 cut(s) 119, 241, 483, 633, 681, 686, 977, 1064
AclI AACGTT 1 cut(s) 999
AcoI YGGCCR 2 cut(s) 955, 978
AdeI CACNNNGTG 1 cut(s) 925
AfaI GTAC 1 cut(s) 800
AfiI CCNNNNNNNGG 6 cut(s) 100, 112, 124, 321, 349, 854
AflIII ACRYGT 2 cut(s) 801, 822
AgeI ACCGGT 1 cut(s) 1078
AhdI GACNNNNNGTC 1 cut(s) 561
AjnI CCWGG 4 cut(s) 80, 320, 360, 594
AleI CACNNNNGTG 1 cut(s) 608
AluBI AGCT 2 cut(s) 76, 902
AluI AGCT 2 cut(s) 76, 902
Alw21I GWGCWC 1 cut(s) 912
Alw26I GTCTC 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 198
Aor13HI TCCGGA 1 cut(s) 707
AoxI GGCC 9 cut(s) 114, 126, 324, 597, 668, 738, 779, 955, 978
ApeKI GCWGC 1 cut(s) 46
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
AsiGI ACCGGT 1 cut(s) 1078
AspLEI GCGC 3 cut(s) 111, 359, 977
AspS9I GGNCC 9 cut(s) 103, 115, 324, 480, 589, 669, 779, 845, 960
AsuC2I CCSGG 3 cut(s) 467, 478, 496
AsuHPI GGTGA 2 cut(s) 304, 634
AvaI CYCGRG 1 cut(s) 198
AvaII GGWCC 5 cut(s) 103, 480, 589, 845, 960
Bbv12I GWGCWC 1 cut(s) 912
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 17, 46
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 4 cut(s) 82, 322, 362, 596
BcnI CCSGG 3 cut(s) 467, 478, 496
BcoDI GTCTC 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 3 cut(s) 47, 634, 978
BlsI GCNGC 3 cut(s) 48, 635, 979
Bme1390I CCNGG 7 cut(s) 82, 322, 362, 467, 478, 496, 596
Bme18I GGWCC 5 cut(s) 103, 480, 589, 845, 960
BmeRI GACNNNNNGTC 1 cut(s) 561
BmeT110I CYCGRG 1 cut(s) 198
BmgT120I GGNCC 9 cut(s) 103, 115, 324, 480, 589, 669, 779, 845, 960
BmiI GGNNCC 5 cut(s) 6, 117, 481, 591, 780
BmrFI CCNGG 7 cut(s) 82, 322, 362, 467, 478, 496, 596
BmsI GCATC 1 cut(s) 603
BoxI GACNNNNGTC 1 cut(s) 409
BpmI CTGGAG 3 cut(s) 304, 445, 890
BpuMI CCSGG 3 cut(s) 467, 478, 496
BsaAI YACGTR 1 cut(s) 802
BsaJI CCNNGG 6 cut(s) 285, 321, 360, 378, 508, 594
BsaWI WCCGGW 3 cut(s) 65, 707, 1078
Bsc4I CCNNNNNNNGG 6 cut(s) 100, 112, 124, 321, 349, 854
Bse118I RCCGGY 2 cut(s) 957, 1078
Bse1I ACTGG 2 cut(s) 369, 981
BseAI TCCGGA 1 cut(s) 707
BseBI CCWGG 4 cut(s) 82, 322, 362, 596
BseDI CCNNGG 6 cut(s) 285, 321, 360, 378, 508, 594
BseGI GGATG 2 cut(s) 716, 739
BseLI CCNNNNNNNGG 6 cut(s) 100, 112, 124, 321, 349, 854
BseNI ACTGG 2 cut(s) 369, 981
BseRI GAGGAG 1 cut(s) 142
BseX3I CGGCCG 1 cut(s) 955
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 2 cut(s) 677, 977
Bsh1285I CGRYCG 4 cut(s) 495, 609, 954, 958
BshFI GGCC 9 cut(s) 116, 128, 326, 599, 670, 740, 781, 957, 980
BshTI ACCGGT 1 cut(s) 1078
BsiEI CGRYCG 4 cut(s) 495, 609, 954, 958
BsiHKAI GWGCWC 1 cut(s) 912
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 9 cut(s) 66, 125, 467, 477, 495, 667, 708, 958, 1079
BslFI GGGAC 2 cut(s) 511, 872
BslI CCNNNNNNNGG 6 cut(s) 100, 112, 124, 321, 349, 854
BsmAI GTCTC 1 cut(s) 19
BsmBI CGTCTC 1 cut(s) 19
BsmFI GGGAC 2 cut(s) 511, 872
BsnI GGCC 9 cut(s) 116, 128, 326, 599, 670, 740, 781, 957, 980
BsoBI CYCGRG 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 912
Bsp13I TCCGGA 1 cut(s) 707
Bsp143I GATC 5 cut(s) 699, 891, 951, 969, 1030
BspACI CCGC 8 cut(s) 119, 241, 483, 633, 681, 686, 977, 1064
BspANI GGCC 9 cut(s) 116, 128, 326, 599, 670, 740, 781, 957, 980
BspEI TCCGGA 1 cut(s) 707
BspFNI CGCG 2 cut(s) 677, 977
BspLI GGNNCC 5 cut(s) 6, 117, 481, 591, 780
BspMI ACCTGC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 681
BsrFI RCCGGY 2 cut(s) 957, 1078
BsrI ACTGG 2 cut(s) 369, 981
BssAI RCCGGY 2 cut(s) 957, 1078
BssECI CCNNGG 6 cut(s) 285, 321, 360, 378, 508, 594
BssMI GATC 5 cut(s) 699, 891, 951, 969, 1030
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 4 cut(s) 82, 322, 362, 596
Bst4CI ACNGT 3 cut(s) 607, 836, 849
Bst6I CTCTTC 1 cut(s) 753
BstBAI YACGTR 1 cut(s) 802
BstC8I GCNNGC 5 cut(s) 74, 278, 282, 578, 679
BstENI CCTNNNNNAGG 2 cut(s) 110, 319
BstF5I GGATG 2 cut(s) 716, 739
BstFNI CGCG 2 cut(s) 677, 977
BstHHI GCGC 3 cut(s) 111, 359, 977
BstKTI GATC 5 cut(s) 702, 894, 954, 972, 1033
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 5 cut(s) 699, 891, 951, 969, 1030
BstMCI CGRYCG 4 cut(s) 495, 609, 954, 958
BstMWI GCNNNNNNNGC 3 cut(s) 390, 683, 815
BstNI CCWGG 4 cut(s) 82, 322, 362, 596
BstNSI RCATGY 2 cut(s) 580, 826
BstPAI GACNNNNGTC 1 cut(s) 409
BstSCI CCNGG 7 cut(s) 80, 320, 360, 465, 476, 494, 594
BstUI CGCG 2 cut(s) 677, 977
BstV1I GCAGC 1 cut(s) 58
BstZI CGGCCG 1 cut(s) 955
BsuRI GGCC 9 cut(s) 116, 128, 326, 599, 670, 740, 781, 957, 980
BtsCI GGATG 2 cut(s) 716, 739
BtsIMutI CAGTG 3 cut(s) 95, 376, 1022
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 5 cut(s) 74, 278, 282, 578, 679
CfoI GCGC 3 cut(s) 111, 359, 977
Cfr10I RCCGGY 2 cut(s) 957, 1078
Cfr13I GGNCC 9 cut(s) 103, 115, 324, 480, 589, 669, 779, 845, 960
CpoI CGGWCCG 2 cut(s) 845, 960
CseI GACGC 3 cut(s) 52, 414, 683
Csp6I GTAC 1 cut(s) 799
CspAI ACCGGT 1 cut(s) 1078
CspI CGGWCCG 2 cut(s) 845, 960
CviAII CATG 6 cut(s) 394, 577, 697, 823, 862, 967
CviQI GTAC 1 cut(s) 799
DpnI GATC 5 cut(s) 701, 893, 953, 971, 1032
DpnII GATC 5 cut(s) 699, 891, 951, 969, 1030
DraIII CACNNNGTG 1 cut(s) 925
DriI GACNNNNNGTC 1 cut(s) 561
EaeI YGGCCR 2 cut(s) 955, 978
EagI CGGCCG 1 cut(s) 955
Eam1104I CTCTTC 1 cut(s) 753
Eam1105I GACNNNNNGTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 753
EciI GGCGGA 1 cut(s) 1079
EclXI CGGCCG 1 cut(s) 955
Eco130I CCWWGG 1 cut(s) 378
Eco147I AGGCCT 1 cut(s) 740
Eco47I GGWCC 5 cut(s) 103, 480, 589, 845, 960
Eco52I CGGCCG 1 cut(s) 955
Eco88I CYCGRG 1 cut(s) 198
EcoNI CCTNNNNNAGG 2 cut(s) 110, 319
EcoO109I RGGNCCY 2 cut(s) 103, 115
EcoRII CCWGG 4 cut(s) 80, 320, 360, 594
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 6 cut(s) 397, 580, 700, 826, 865, 970
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 2 cut(s) 511, 872
FatI CATG 6 cut(s) 393, 576, 696, 822, 861, 966
FauI CCCGC 3 cut(s) 126, 674, 679
Fnu4HI GCNGC 3 cut(s) 47, 634, 978
FokI GGATG 2 cut(s) 723, 746
Fsp4HI GCNGC 3 cut(s) 47, 634, 978
FspI TGCGCA 1 cut(s) 110
GlaI GCGC 3 cut(s) 110, 358, 976
GluI GCNGC 3 cut(s) 47, 634, 978
GsuI CTGGAG 3 cut(s) 304, 445, 890
HaeIII GGCC 9 cut(s) 116, 128, 326, 599, 670, 740, 781, 957, 980
HapII CCGG 9 cut(s) 66, 125, 467, 477, 495, 667, 708, 958, 1079
HgaI GACGC 3 cut(s) 52, 414, 683
HhaI GCGC 3 cut(s) 111, 359, 977
Hin1II CATG 6 cut(s) 397, 580, 700, 826, 865, 970
Hin6I GCGC 3 cut(s) 109, 357, 975
HinP1I GCGC 3 cut(s) 109, 357, 975
HincII GTYRAC 3 cut(s) 547, 572, 720
HindII GTYRAC 3 cut(s) 547, 572, 720
HinfI GANTC 5 cut(s) 85, 346, 397, 704, 1012
HpaII CCGG 9 cut(s) 66, 125, 467, 477, 495, 667, 708, 958, 1079
HphI GGTGA 2 cut(s) 304, 634
Hpy166II GTNNAC 4 cut(s) 312, 547, 572, 720
Hpy188I TCNGA 5 cut(s) 302, 404, 693, 845, 964
Hpy188III TCNNGA 5 cut(s) 59, 206, 610, 708, 895
Hpy8I GTNNAC 4 cut(s) 312, 547, 572, 720
Hpy99I CGWCG 3 cut(s) 275, 677, 818
HpyAV CCTTC 8 cut(s) 94, 153, 169, 325, 429, 666, 748, 787
HpyCH4III ACNGT 3 cut(s) 607, 836, 849
HpyCH4IV ACGT 3 cut(s) 801, 813, 999
HpyCH4V TGCA 3 cut(s) 177, 192, 453
HpyF10VI GCNNNNNNNGC 3 cut(s) 390, 683, 815
HpySE526I ACGT 3 cut(s) 801, 813, 999
Hsp92II CATG 6 cut(s) 397, 580, 700, 826, 865, 970
HspAI GCGC 3 cut(s) 109, 357, 975
Kpn2I TCCGGA 1 cut(s) 707
Kzo9I GATC 5 cut(s) 699, 891, 951, 969, 1030
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 603
MaeII ACGT 3 cut(s) 801, 813, 999
MaeIII GTNAC 3 cut(s) 371, 836, 983
MalI GATC 5 cut(s) 701, 893, 953, 971, 1032
MbiI CCGCTC 1 cut(s) 681
MboI GATC 5 cut(s) 699, 891, 951, 969, 1030
MboII GAAGA 1 cut(s) 770
MhlI GDGCHC 1 cut(s) 912
MluCI AATT 3 cut(s) 583, 770, 785
MlyI GAGTC 2 cut(s) 340, 698
MmeI TCCRAC 1 cut(s) 987
MroI TCCGGA 1 cut(s) 707
MseI TTAA 2 cut(s) 768, 788
MslI CAYNNNNRTG 1 cut(s) 608
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 9 cut(s) 66, 125, 467, 477, 495, 667, 708, 958, 1079
MspR9I CCNGG 7 cut(s) 82, 322, 362, 467, 478, 496, 596
MvaI CCWGG 4 cut(s) 82, 322, 362, 596
MvnI CGCG 2 cut(s) 677, 977
MwoI GCNNNNNNNGC 3 cut(s) 390, 683, 815
NciI CCSGG 3 cut(s) 467, 478, 496
NdeII GATC 5 cut(s) 699, 891, 951, 969, 1030
NlaIII CATG 6 cut(s) 397, 580, 700, 826, 865, 970
NlaIV GGNNCC 5 cut(s) 6, 117, 481, 591, 780
NmeAIII GCCGAG 2 cut(s) 310, 506
NmuCI GTSAC 1 cut(s) 371
NsbI TGCGCA 1 cut(s) 110
NspI RCATGY 2 cut(s) 580, 826
OliI CACNNNNGTG 1 cut(s) 608
PaeI GCATGC 1 cut(s) 580
PaqCI CACCTGC 1 cut(s) 236
PceI AGGCCT 1 cut(s) 740
PciI ACATGT 1 cut(s) 822
PcsI WCGNNNNNNNCGW 1 cut(s) 960
PfeI GAWTC 3 cut(s) 85, 397, 1012
PfoI TCCNGGA 1 cut(s) 80
PinAI ACCGGT 1 cut(s) 1078
PkrI GCNGC 3 cut(s) 48, 635, 979
Ple19I CGATCG 1 cut(s) 954
PleI GAGTC 2 cut(s) 340, 698
PpsI GAGTC 2 cut(s) 340, 698
Ppu21I YACGTR 1 cut(s) 802
PpuMI RGGWCCY 1 cut(s) 103
PscI ACATGT 1 cut(s) 822
PshAI GACNNNNGTC 1 cut(s) 409
Psp1406I AACGTT 1 cut(s) 999
Psp5II RGGWCCY 1 cut(s) 103
Psp6I CCWGG 4 cut(s) 80, 320, 360, 594
PspGI CCWGG 4 cut(s) 80, 320, 360, 594
PspN4I GGNNCC 5 cut(s) 6, 117, 481, 591, 780
PspPI GGNCC 9 cut(s) 103, 115, 324, 480, 589, 669, 779, 845, 960
PspPPI RGGWCCY 1 cut(s) 103
PvuI CGATCG 1 cut(s) 954
PvuII CAGCTG 1 cut(s) 76
RsaI GTAC 1 cut(s) 800
RsaNI GTAC 1 cut(s) 799
RseI CAYNNNNRTG 1 cut(s) 608
Rsr2I CGGWCCG 2 cut(s) 845, 960
RsrII CGGWCCG 2 cut(s) 845, 960
SaqAI TTAA 2 cut(s) 768, 788
SatI GCNGC 3 cut(s) 47, 634, 978
Sau3AI GATC 5 cut(s) 699, 891, 951, 969, 1030
Sau96I GGNCC 9 cut(s) 103, 115, 324, 480, 589, 669, 779, 845, 960
SchI GAGTC 2 cut(s) 340, 698
ScrFI CCNGG 7 cut(s) 82, 322, 362, 467, 478, 496, 596
SduI GDGCHC 1 cut(s) 912
SfaNI GCATC 1 cut(s) 603
SinI GGWCC 5 cut(s) 103, 480, 589, 845, 960
SmiMI CAYNNNNRTG 1 cut(s) 608
SphI GCATGC 1 cut(s) 580
Sse9I AATT 3 cut(s) 583, 770, 785
SseBI AGGCCT 1 cut(s) 740
SsiI CCGC 8 cut(s) 119, 241, 483, 633, 681, 686, 977, 1064
StuI AGGCCT 1 cut(s) 740
StyD4I CCNGG 7 cut(s) 80, 320, 360, 465, 476, 494, 594
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 3 cut(s) 607, 836, 849
TaiI ACGT 3 cut(s) 804, 816, 1002
TaqI TCGA 4 cut(s) 60, 138, 538, 702
TaqII GACCGA 1 cut(s) 551
TasI AATT 3 cut(s) 583, 770, 785
TauI GCSGC 2 cut(s) 636, 980
TfiI GAWTC 3 cut(s) 85, 397, 1012
Tru1I TTAA 2 cut(s) 768, 788
Tru9I TTAA 2 cut(s) 768, 788
TscAI CASTG 3 cut(s) 95, 376, 1022
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 2 cut(s) 410, 992
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 3 cut(s) 95, 376, 1022
VpaK11BI GGWCC 5 cut(s) 103, 480, 589, 845, 960
XagI CCTNNNNNAGG 2 cut(s) 110, 319
XceI RCATGY 2 cut(s) 580, 826
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.