RLG00000022831

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015933
Physical Location & Seq
Forward (+)
12877287 .. 12878372
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022831

Sequence Viewer

Length: 1086 bp
ATGGCTCCCATCGTCTCCCTCCCCATAGGCACACCTCCCCAGACGCAGCAGATGGTTCTCGACACCGGAAGCCAGCTGTCCTGGATTCAGTGCCACAAGAAGGTCCTGCGCAAGGCCCCGCCTCCGGCATCCATATTCGACCCTTCCCTCTCCTCCACCTTCTCCGTCCTCCCTTGCAACCACCCTATCTGCAAACCCCGAGTTCCCGACTTTACCCTCCCCACCACCTGCGACCAGAACCGCCTCTGCCACTACTCCTACTTCTACGCCGACGGCACGCTCGCCGAGGGCAATCTCGTCAGAGAAAAGTTCACCTTCTCCAGGGCCACCAGCACCCCTCCCCTGACTCTGGGTTGCGCCCAGGACACCAGTGACACCAAGGGCATTTTGGGCATGAATCTTGGACGCTTGTCGTTTCCTTCCCAAGCCAAAATCACAAAGTTCTCCTACTGCATACCCTCCCGCCCGGCTCAAACCGGGTCCGCTTCGCCGACCGGGACTTTTTACCTCGGTAACAATCCGAACTCGGCAACTTTTCGATATGTTGACCTTTTGACTTTCAGTCAAAGTCAACGCATGCCTAATTTAGACCCCCTGGCCTACACGGTCGTGATGCTTGGGGTGAGGATAGGCGGCAAGAAGTTGAGCATTTTACCTTCGGTTTTCCGGCCCGACCCGAGCGGGGCGGGTCAGACCATGATCGACTCCGGATGTGAGTTGACTTACTTTGTGGATGAGGCCTACAACAAAGTGAAGGAAGAGGTTGTTAAATTAGTGGGGCCAAAATTGAAGAAGGGGTACGTGTATGCGAACGTCGCCGACATGTGTTTTGACAGTAACATCGGACCGTTGATAGGGGACATGGTGTTAGAGTTTGATAAAGGAGTGGAGATCGTGATTGCTAAAGAGCAAATGTTACACAATGTGGAGGGCAAAGTGTGGTGCGTGGCGATCGGGCGGTCCGACATGATCGGCGCGGCCAGTAACATAATCGGCAACGTTCATCAGCAGAATCAATGGGTGGAGTTTGATTTGGCAAATCGTAGAGTAGGGTTTGGTAAGGCGGATTGTAGCAGACCGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

362

Amino Acids

39.45

Weight (kDa)

8.56

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 4 - 161 5.6e-36 Xylanase inhibitor N-terminal
Asp PF00026 7 - 55 2.2e-06 Eukaryotic aspartyl protease
Asp PF00026 89 - 354 5.9e-07 Eukaryotic aspartyl protease
TAXi_C PF14541 200 - 353 1.1e-32 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66180 AT5G37540
fragaria_vesca FvH4_1g30150
malus_domestica MD09G1270000.v1.1 MD17G1268100.v1.1
prunus_persica Prupe.3G165900_v2.0.a1
pyrus_communis pycom09g18120
rosa_chinensis RchiOBHm_Chr3g0491651
rosa_laevigata RLG00000022831
rosa_rugosa Rorug03G0250700.1
rosa_samantha Rh3AG299500 Rh3BG336200 Rh3CG332500 Rh3DG334100
rosa_wichuraiana Rw3G026460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc16I TGCGCA 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 236
AccBSI CCGCTC 1 cut(s) 681
AccII CGCG 1 cut(s) 977
AccIII TCCGGA 1 cut(s) 707
AclI AACGTT 1 cut(s) 999
AcoI YGGCCR 1 cut(s) 978
AdeI CACNNNGTG 1 cut(s) 925
AfaI GTAC 1 cut(s) 800
AfiI CCNNNNNNNGG 7 cut(s) 100, 112, 124, 321, 349, 682, 854
AflIII ACRYGT 2 cut(s) 801, 822
AgeI ACCGGT 1 cut(s) 1078
AgsI TTSAA 1 cut(s) 790
AhdI GACNNNNNGTC 1 cut(s) 561
AjnI CCWGG 4 cut(s) 80, 320, 360, 594
AleI CACNNNNGTG 1 cut(s) 608
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 19
Ama87I CYCGRG 2 cut(s) 198, 676
Aor13HI TCCGGA 1 cut(s) 707
AoxI GGCC 7 cut(s) 114, 324, 597, 668, 738, 779, 978
ApeKI GCWGC 1 cut(s) 46
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
AsiGI ACCGGT 1 cut(s) 1078
AspLEI GCGC 3 cut(s) 111, 359, 977
AspS9I GGNCC 8 cut(s) 103, 115, 324, 480, 669, 779, 845, 960
AsuC2I CCSGG 3 cut(s) 467, 478, 496
AsuHPI GGTGA 2 cut(s) 304, 634
AvaI CYCGRG 2 cut(s) 198, 676
AvaII GGWCC 4 cut(s) 103, 480, 845, 960
BarI GAAGNNNNNNTAC 2 cut(s) 782, 814
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 17, 46
BceAI ACGGC 1 cut(s) 289
BciT130I CCWGG 4 cut(s) 82, 322, 362, 596
BcnI CCSGG 3 cut(s) 467, 478, 496
BcoDI GTCTC 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 3 cut(s) 47, 634, 978
BlsI GCNGC 3 cut(s) 48, 635, 979
Bme1390I CCNGG 7 cut(s) 82, 322, 362, 467, 478, 496, 596
Bme18I GGWCC 4 cut(s) 103, 480, 845, 960
BmeRI GACNNNNNGTC 1 cut(s) 561
BmeT110I CYCGRG 2 cut(s) 198, 676
BmgT120I GGNCC 8 cut(s) 103, 115, 324, 480, 669, 779, 845, 960
BmiI GGNNCC 4 cut(s) 6, 117, 481, 780
BmrFI CCNGG 7 cut(s) 82, 322, 362, 467, 478, 496, 596
BmsI GCATC 2 cut(s) 137, 603
BoxI GACNNNNGTC 1 cut(s) 409
BpmI CTGGAG 1 cut(s) 304
BpuMI CCSGG 3 cut(s) 467, 478, 496
BsaAI YACGTR 1 cut(s) 802
BsaJI CCNNGG 6 cut(s) 285, 321, 360, 378, 508, 594
BsaWI WCCGGW 3 cut(s) 65, 707, 1078
Bsc4I CCNNNNNNNGG 7 cut(s) 100, 112, 124, 321, 349, 682, 854
Bse118I RCCGGY 1 cut(s) 1078
Bse1I ACTGG 2 cut(s) 369, 981
BseAI TCCGGA 1 cut(s) 707
BseBI CCWGG 4 cut(s) 82, 322, 362, 596
BseDI CCNNGG 6 cut(s) 285, 321, 360, 378, 508, 594
BseGI GGATG 3 cut(s) 128, 716, 739
BseLI CCNNNNNNNGG 7 cut(s) 100, 112, 124, 321, 349, 682, 854
BseNI ACTGG 2 cut(s) 369, 981
BseRI GAGGAG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 977
Bsh1285I CGRYCG 3 cut(s) 495, 609, 954
BshFI GGCC 7 cut(s) 116, 326, 599, 670, 740, 781, 980
BshTI ACCGGT 1 cut(s) 1078
BsiEI CGRYCG 3 cut(s) 495, 609, 954
BsiHKCI CYCGRG 2 cut(s) 198, 676
BsiSI CCGG 8 cut(s) 66, 125, 467, 477, 495, 667, 708, 1079
BslFI GGGAC 2 cut(s) 511, 872
BslI CCNNNNNNNGG 7 cut(s) 100, 112, 124, 321, 349, 682, 854
BsmAI GTCTC 1 cut(s) 19
BsmBI CGTCTC 1 cut(s) 19
BsmFI GGGAC 2 cut(s) 511, 872
BsnI GGCC 7 cut(s) 116, 326, 599, 670, 740, 781, 980
BsoBI CYCGRG 2 cut(s) 198, 676
Bsp13I TCCGGA 1 cut(s) 707
Bsp143I GATC 4 cut(s) 699, 891, 951, 969
BspANI GGCC 7 cut(s) 116, 326, 599, 670, 740, 781, 980
BspEI TCCGGA 1 cut(s) 707
BspFNI CGCG 1 cut(s) 977
BspLI GGNNCC 4 cut(s) 6, 117, 481, 780
BspMI ACCTGC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 681
BsrFI RCCGGY 1 cut(s) 1078
BsrI ACTGG 2 cut(s) 369, 981
BssAI RCCGGY 1 cut(s) 1078
BssECI CCNNGG 6 cut(s) 285, 321, 360, 378, 508, 594
BssMI GATC 4 cut(s) 699, 891, 951, 969
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 4 cut(s) 82, 322, 362, 596
Bst4CI ACNGT 3 cut(s) 607, 836, 849
Bst6I CTCTTC 1 cut(s) 753
BstBAI YACGTR 1 cut(s) 802
BstC8I GCNNGC 4 cut(s) 74, 278, 282, 578
BstENI CCTNNNNNAGG 2 cut(s) 110, 319
BstF5I GGATG 3 cut(s) 128, 716, 739
BstFNI CGCG 1 cut(s) 977
BstHHI GCGC 3 cut(s) 111, 359, 977
BstKTI GATC 4 cut(s) 702, 894, 954, 972
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 4 cut(s) 699, 891, 951, 969
BstMCI CGRYCG 3 cut(s) 495, 609, 954
BstMWI GCNNNNNNNGC 2 cut(s) 390, 815
BstNI CCWGG 4 cut(s) 82, 322, 362, 596
BstNSI RCATGY 2 cut(s) 580, 826
BstPAI GACNNNNGTC 1 cut(s) 409
BstSCI CCNGG 7 cut(s) 80, 320, 360, 465, 476, 494, 594
BstUI CGCG 1 cut(s) 977
BstV1I GCAGC 1 cut(s) 58
BsuRI GGCC 7 cut(s) 116, 326, 599, 670, 740, 781, 980
BtsCI GGATG 3 cut(s) 128, 716, 739
BtsIMutI CAGTG 2 cut(s) 95, 376
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 4 cut(s) 74, 278, 282, 578
CfoI GCGC 3 cut(s) 111, 359, 977
Cfr10I RCCGGY 1 cut(s) 1078
Cfr13I GGNCC 8 cut(s) 103, 115, 324, 480, 669, 779, 845, 960
CpoI CGGWCCG 2 cut(s) 845, 960
CseI GACGC 2 cut(s) 52, 414
Csp6I GTAC 1 cut(s) 799
CspAI ACCGGT 1 cut(s) 1078
CspI CGGWCCG 2 cut(s) 845, 960
CviAII CATG 6 cut(s) 394, 577, 697, 823, 862, 967
CviQI GTAC 1 cut(s) 799
DpnI GATC 4 cut(s) 701, 893, 953, 971
DpnII GATC 4 cut(s) 699, 891, 951, 969
DraIII CACNNNGTG 1 cut(s) 925
DriI GACNNNNNGTC 1 cut(s) 561
EaeI YGGCCR 1 cut(s) 978
Eam1104I CTCTTC 1 cut(s) 753
Eam1105I GACNNNNNGTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 753
EciI GGCGGA 1 cut(s) 1079
Eco130I CCWWGG 1 cut(s) 378
Eco147I AGGCCT 1 cut(s) 740
Eco47I GGWCC 4 cut(s) 103, 480, 845, 960
Eco88I CYCGRG 2 cut(s) 198, 676
EcoNI CCTNNNNNAGG 2 cut(s) 110, 319
EcoO109I RGGNCCY 2 cut(s) 103, 115
EcoRII CCWGG 4 cut(s) 80, 320, 360, 594
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 6 cut(s) 397, 580, 700, 826, 865, 970
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 2 cut(s) 511, 872
FatI CATG 6 cut(s) 393, 576, 696, 822, 861, 966
FauI CCCGC 4 cut(s) 126, 470, 674, 679
Fnu4HI GCNGC 3 cut(s) 47, 634, 978
FokI GGATG 3 cut(s) 115, 723, 746
Fsp4HI GCNGC 3 cut(s) 47, 634, 978
FspI TGCGCA 1 cut(s) 110
GlaI GCGC 3 cut(s) 110, 358, 976
GluI GCNGC 3 cut(s) 47, 634, 978
GsuI CTGGAG 1 cut(s) 304
HaeIII GGCC 7 cut(s) 116, 326, 599, 670, 740, 781, 980
HapII CCGG 8 cut(s) 66, 125, 467, 477, 495, 667, 708, 1079
HgaI GACGC 2 cut(s) 52, 414
HhaI GCGC 3 cut(s) 111, 359, 977
Hin1II CATG 6 cut(s) 397, 580, 700, 826, 865, 970
Hin6I GCGC 3 cut(s) 109, 357, 975
HinP1I GCGC 3 cut(s) 109, 357, 975
HincII GTYRAC 3 cut(s) 547, 572, 720
HindII GTYRAC 3 cut(s) 547, 572, 720
HinfI GANTC 5 cut(s) 85, 346, 397, 704, 1012
HpaII CCGG 8 cut(s) 66, 125, 467, 477, 495, 667, 708, 1079
HphI GGTGA 2 cut(s) 304, 634
Hpy166II GTNNAC 4 cut(s) 312, 547, 572, 720
Hpy188I TCNGA 5 cut(s) 302, 522, 693, 845, 964
Hpy188III TCNNGA 5 cut(s) 59, 206, 610, 708, 895
Hpy8I GTNNAC 4 cut(s) 312, 547, 572, 720
Hpy99I CGWCG 2 cut(s) 275, 818
HpyAV CCTTC 8 cut(s) 94, 153, 169, 325, 429, 666, 748, 787
HpyCH4III ACNGT 3 cut(s) 607, 836, 849
HpyCH4IV ACGT 3 cut(s) 801, 813, 999
HpyCH4V TGCA 3 cut(s) 177, 192, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 390, 815
HpySE526I ACGT 3 cut(s) 801, 813, 999
Hsp92II CATG 6 cut(s) 397, 580, 700, 826, 865, 970
HspAI GCGC 3 cut(s) 109, 357, 975
Kpn2I TCCGGA 1 cut(s) 707
Kzo9I GATC 4 cut(s) 699, 891, 951, 969
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 137, 603
MaeII ACGT 3 cut(s) 801, 813, 999
MaeIII GTNAC 5 cut(s) 371, 512, 836, 915, 983
MalI GATC 4 cut(s) 701, 893, 953, 971
MbiI CCGCTC 1 cut(s) 681
MboI GATC 4 cut(s) 699, 891, 951, 969
MboII GAAGA 2 cut(s) 770, 802
MluCI AATT 3 cut(s) 583, 770, 785
MlyI GAGTC 2 cut(s) 340, 698
MmeI TCCRAC 1 cut(s) 987
MroI TCCGGA 1 cut(s) 707
MseI TTAA 1 cut(s) 768
MslI CAYNNNNRTG 1 cut(s) 608
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 8 cut(s) 66, 125, 467, 477, 495, 667, 708, 1079
MspR9I CCNGG 7 cut(s) 82, 322, 362, 467, 478, 496, 596
MvaI CCWGG 4 cut(s) 82, 322, 362, 596
MvnI CGCG 1 cut(s) 977
MwoI GCNNNNNNNGC 2 cut(s) 390, 815
NciI CCSGG 3 cut(s) 467, 478, 496
NdeII GATC 4 cut(s) 699, 891, 951, 969
NlaIII CATG 6 cut(s) 397, 580, 700, 826, 865, 970
NlaIV GGNNCC 4 cut(s) 6, 117, 481, 780
NmeAIII GCCGAG 2 cut(s) 310, 506
NmuCI GTSAC 1 cut(s) 371
NsbI TGCGCA 1 cut(s) 110
NspI RCATGY 2 cut(s) 580, 826
OliI CACNNNNGTG 1 cut(s) 608
PaeI GCATGC 1 cut(s) 580
PaqCI CACCTGC 1 cut(s) 236
PceI AGGCCT 1 cut(s) 740
PciI ACATGT 1 cut(s) 822
PcsI WCGNNNNNNNCGW 1 cut(s) 960
PfeI GAWTC 3 cut(s) 85, 397, 1012
PfoI TCCNGGA 1 cut(s) 80
PinAI ACCGGT 1 cut(s) 1078
PkrI GCNGC 3 cut(s) 48, 635, 979
Ple19I CGATCG 1 cut(s) 954
PleI GAGTC 2 cut(s) 340, 698
PpsI GAGTC 2 cut(s) 340, 698
Ppu21I YACGTR 1 cut(s) 802
PpuMI RGGWCCY 1 cut(s) 103
PscI ACATGT 1 cut(s) 822
PshAI GACNNNNGTC 1 cut(s) 409
Psp1406I AACGTT 1 cut(s) 999
Psp5II RGGWCCY 1 cut(s) 103
Psp6I CCWGG 4 cut(s) 80, 320, 360, 594
PspGI CCWGG 4 cut(s) 80, 320, 360, 594
PspN4I GGNNCC 4 cut(s) 6, 117, 481, 780
PspPI GGNCC 8 cut(s) 103, 115, 324, 480, 669, 779, 845, 960
PspPPI RGGWCCY 1 cut(s) 103
PvuI CGATCG 1 cut(s) 954
PvuII CAGCTG 1 cut(s) 76
RsaI GTAC 1 cut(s) 800
RsaNI GTAC 1 cut(s) 799
RseI CAYNNNNRTG 1 cut(s) 608
Rsr2I CGGWCCG 2 cut(s) 845, 960
RsrII CGGWCCG 2 cut(s) 845, 960
SaqAI TTAA 1 cut(s) 768
SatI GCNGC 3 cut(s) 47, 634, 978
Sau3AI GATC 4 cut(s) 699, 891, 951, 969
Sau96I GGNCC 8 cut(s) 103, 115, 324, 480, 669, 779, 845, 960
SchI GAGTC 2 cut(s) 340, 698
ScrFI CCNGG 7 cut(s) 82, 322, 362, 467, 478, 496, 596
SfaNI GCATC 2 cut(s) 137, 603
SinI GGWCC 4 cut(s) 103, 480, 845, 960
SmiMI CAYNNNNRTG 1 cut(s) 608
SphI GCATGC 1 cut(s) 580
Sse9I AATT 3 cut(s) 583, 770, 785
SseBI AGGCCT 1 cut(s) 740
StuI AGGCCT 1 cut(s) 740
StyD4I CCNGG 7 cut(s) 80, 320, 360, 465, 476, 494, 594
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 3 cut(s) 607, 836, 849
TaiI ACGT 3 cut(s) 804, 816, 1002
TaqI TCGA 4 cut(s) 60, 138, 538, 702
TasI AATT 3 cut(s) 583, 770, 785
TauI GCSGC 2 cut(s) 636, 980
TfiI GAWTC 3 cut(s) 85, 397, 1012
Tru1I TTAA 1 cut(s) 768
Tru9I TTAA 1 cut(s) 768
TscAI CASTG 2 cut(s) 95, 376
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 2 cut(s) 410, 992
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 2 cut(s) 95, 376
VpaK11BI GGWCC 4 cut(s) 103, 480, 845, 960
XagI CCTNNNNNAGG 2 cut(s) 110, 319
XceI RCATGY 2 cut(s) 580, 826
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.