Prupe.3G165900_v2.0.a1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015933
Physical Location & Seq
Forward (+)
18487172 .. 18488757
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G165900.1

Sequence Viewer

Length: 1347 bp
ATGGCTCTCTCTCAAAAAACCATGCTCCTAATATCTCTCTTCTTCCTCATCTCTCCTTCTCTGTCAGCCAAAGAGAACAAGTACCTGAACAACACCACTTTTTCTCTCTCTTTCCCTCTCACTTCTTCTCAACTTTCTCTCGCTCCAAACACATCCAAACCTCTCCATCATGCCTCTCTCATTTCAAACTCCAGGCGAATCCCAAGACTCACATCGTACAACCAGAAGCTCTCCTTCAAGTATTCAATGGCTCCGATTGTTTCTCTCCCCATAGGCACTCCTCCACAGACCCAGCAGATGGTTTTAGACACTGGCAGCCAGCTCTCATGGATTCAGTGCCACAAGAAGACCCCCAAGTCAAAGCCACCACCTCCTCCGATGGCGTCGTTTGACCCTTCTCTCTCCTCTACTTTCTCTGTCTTGCCTTGTACTCACCCTATTTGCAAACCCCGAGTTCCCGATTTTACCCTCCCCACCTCTTGCGACCAAAACAAACTCTGCCACTACTCCTACTTCTTTGCTGATGGTACTTTGGCCGAGGGCAATCTCGTCCGAGAAAAATTTACCTTTTCTCCTTCCGTAAGTACCCCTCCCTTGATCCTTGGATGCGCTAAGGACACCAGTGACAGCAAAGGTATTTTGGGTATGAACCGCGGGCGGGTTTCATTTGCTTCCGAAGCCAAAATCACAAAGTTCTCTTACTGCATACCCGCCCGCCCGGCTCAAACCGGGTCTAATCTGCCAACCGGGACTTTTTACTTGGGAAACAACCCGAATTCCGCGGGATTCCGATACGTTGACATGTTGACTTTTGATCCAAGTCAACGCATGCCGAATTTGGATCCCCTTGCCTATACAGTTGTAATGTTGGGGATAAGAATTGGCGGGAAAAAGTTAAGTATTTTACCCTCTGTTTTCCGGCACGACCCGAGCGGGGCGGGTCAGACCATGATCGATTCCGGCTCCGAGTTCACGTACTTTGTGGACGAGGCTTATACTAAGGTAAGGGAAGAGATTGTGAGACTGGTGGGACCGAGGTTAAAAAACGGTTACGTGTACGCGGGGGTAGCTGACATGTGTTTCGACGGTCATGACGTGGAGATCGGACGGCTGATAGGAGATATGGTGTTTGAGTTTGACAAAGGAGTGGAGATTGTGACGACTAAAGAACAAATTTTAGCCGATGTTGGTGGTGGGGTCCGCTGCGTGGCAATCGGGCAATCCAGCAAGCTTGGTGCGGCGAGTAATATAATTGGGAATTTTCATCAGCAAAATCAATGGGTGGAATTTGATCTGAGTAATCGTAGAGTTGGGTTCGGTAGGGCCGATTGTAGCAGATCAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

449

Amino Acids

49.05

Weight (kDa)

9.12

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66180 AT5G37540
fragaria_vesca FvH4_1g30150
malus_domestica MD09G1270000.v1.1 MD17G1268100.v1.1
prunus_persica Prupe.3G165900_v2.0.a1
pyrus_communis pycom09g18120
rosa_chinensis RchiOBHm_Chr3g0491651
rosa_laevigata RLG00000022831
rosa_rugosa Rorug03G0250700.1
rosa_samantha Rh3AG299500 Rh3BG336200 Rh3CG332500 Rh3DG334100
rosa_wichuraiana Rw3G026460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 355
AccB7I CCANNNNNTGG 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 933
AccII CGCG 3 cut(s) 654, 782, 1061
AclWI GGATC 4 cut(s) 592, 809, 836, 849
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 6 cut(s) 560, 775, 835, 1173, 1258, 1286
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 7 cut(s) 83, 218, 430, 529, 586, 977, 1058
AfiI CCNNNNNNNGG 4 cut(s) 298, 658, 934, 1207
AflIII ACRYGT 3 cut(s) 801, 1053, 1074
AgsI TTSAA 3 cut(s) 186, 238, 246
AjiI CACGTC 1 cut(s) 1096
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 4 cut(s) 229, 322, 1070, 1231
AluI AGCT 4 cut(s) 229, 322, 1070, 1231
Alw26I GTCTC 1 cut(s) 1015
AlwI GGATC 4 cut(s) 592, 809, 836, 849
Ama87I CYCGRG 2 cut(s) 450, 928
AoxI GGCC 2 cut(s) 534, 1323
ApeKI GCWGC 2 cut(s) 315, 1203
ApoI RAATTY 6 cut(s) 560, 775, 835, 1173, 1258, 1286
ArsI GACNNNNNNTTYG 2 cut(s) 1064, 1096
AspLEI GCGC 1 cut(s) 611
AspS9I GGNCC 3 cut(s) 1031, 1198, 1323
AsuC2I CCSGG 3 cut(s) 719, 730, 748
AsuHPI GGTGA 1 cut(s) 425
AvaI CYCGRG 2 cut(s) 450, 928
AvaII GGWCC 2 cut(s) 1031, 1198
BamHI GGATCC 1 cut(s) 841
BbsI GAAGAC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 327, 1190
BccI CCATC 4 cut(s) 174, 292, 373, 518
BceAI ACGGC 1 cut(s) 1124
BciT130I CCWGG 1 cut(s) 193
BcnI CCSGG 3 cut(s) 719, 730, 748
BcoDI GTCTC 1 cut(s) 1015
BglI GCCNNNNNGGC 1 cut(s) 719
BisI GCNGC 3 cut(s) 316, 1204, 1239
BlsI GCNGC 3 cut(s) 317, 1205, 1240
Bme1390I CCNGG 4 cut(s) 193, 719, 730, 748
Bme18I GGWCC 2 cut(s) 1031, 1198
BmeT110I CYCGRG 2 cut(s) 450, 928
BmgBI CACGTC 1 cut(s) 1096
BmgT120I GGNCC 3 cut(s) 1031, 1198, 1323
BmiI GGNNCC 5 cut(s) 252, 843, 964, 1032, 1199
BmrFI CCNGG 4 cut(s) 193, 719, 730, 748
BmsI GCATC 1 cut(s) 596
BpiI GAAGAC 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 612
BpuMI CCSGG 3 cut(s) 719, 730, 748
Bsa29I ATCGAT 1 cut(s) 954
BsaAI YACGTR 2 cut(s) 975, 1054
BsaHI GRCGYC 1 cut(s) 383
BsaJI CCNNGG 5 cut(s) 537, 601, 652, 780, 1034
BsaXI ACNNNNNCTCC 4 cut(s) 556, 586, 1110, 1140
Bsc4I CCNNNNNNNGG 4 cut(s) 298, 658, 934, 1207
Bse1I ACTGG 3 cut(s) 316, 621, 1029
BseBI CCWGG 1 cut(s) 193
BseCI ATCGAT 1 cut(s) 954
BseDI CCNNGG 5 cut(s) 537, 601, 652, 780, 1034
BseGI GGATG 2 cut(s) 152, 611
BseLI CCNNNNNNNGG 4 cut(s) 298, 658, 934, 1207
BseMII CTCAG 1 cut(s) 1286
BseNI ACTGG 3 cut(s) 316, 621, 1029
BseRI GAGGAG 3 cut(s) 270, 363, 394
BseXI GCAGC 2 cut(s) 327, 1190
BseYI CCCAGC 1 cut(s) 291
Bsh1236I CGCG 3 cut(s) 654, 782, 1061
BshFI GGCC 2 cut(s) 536, 1325
BshVI ATCGAT 1 cut(s) 954
BsiHKCI CYCGRG 2 cut(s) 450, 928
BsiSI CCGG 5 cut(s) 719, 729, 747, 919, 960
BslFI GGGAC 2 cut(s) 763, 1044
BslI CCNNNNNNNGG 4 cut(s) 298, 658, 934, 1207
BsmAI GTCTC 1 cut(s) 1015
BsmFI GGGAC 2 cut(s) 763, 1044
BsnI GGCC 2 cut(s) 536, 1325
BsoBI CYCGRG 2 cut(s) 450, 928
Bsp143I GATC 7 cut(s) 597, 814, 841, 951, 1101, 1291, 1337
BspANI GGCC 2 cut(s) 536, 1325
BspCNI CTCAG 1 cut(s) 1287
BspDI ATCGAT 1 cut(s) 954
BspFNI CGCG 3 cut(s) 654, 782, 1061
BspHI TCATGA 1 cut(s) 1090
BspLI GGNNCC 5 cut(s) 252, 843, 964, 1032, 1199
BspPI GGATC 4 cut(s) 592, 809, 836, 849
BsrBI CCGCTC 1 cut(s) 933
BsrI ACTGG 3 cut(s) 316, 621, 1029
BssECI CCNNGG 5 cut(s) 537, 601, 652, 780, 1034
BssMI GATC 7 cut(s) 597, 814, 841, 951, 1101, 1291, 1337
BssNI GRCGYC 1 cut(s) 383
BssT1I CCWWGG 1 cut(s) 601
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 3 cut(s) 859, 1049, 1088
Bst6I CTCTTC 2 cut(s) 44, 1005
BstACI GRCGYC 1 cut(s) 383
BstBAI YACGTR 2 cut(s) 975, 1054
BstC8I GCNNGC 5 cut(s) 320, 656, 715, 830, 1229
BstDEI CTNAG 3 cut(s) 612, 999, 1295
BstDSI CCRYGG 2 cut(s) 652, 780
BstF5I GGATG 2 cut(s) 152, 611
BstFNI CGCG 3 cut(s) 654, 782, 1061
BstHHI GCGC 1 cut(s) 611
BstKTI GATC 7 cut(s) 600, 817, 844, 954, 1104, 1294, 1340
BstMAI GTCTC 1 cut(s) 1015
BstMBI GATC 7 cut(s) 597, 814, 841, 951, 1101, 1291, 1337
BstMWI GCNNNNNNNGC 3 cut(s) 677, 719, 1067
BstNI CCWGG 1 cut(s) 193
BstNSI RCATGY 3 cut(s) 805, 832, 1078
BstSCI CCNGG 4 cut(s) 191, 717, 728, 746
BstUI CGCG 3 cut(s) 654, 782, 1061
BstV1I GCAGC 2 cut(s) 327, 1190
BstV2I GAAGAC 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 841
BstYI RGATCY 1 cut(s) 841
Bsu15I ATCGAT 1 cut(s) 954
BsuRI GGCC 2 cut(s) 536, 1325
BsuTUI ATCGAT 1 cut(s) 954
BtgI CCRYGG 2 cut(s) 652, 780
BtrI CACGTC 1 cut(s) 1096
BtsCI GGATG 2 cut(s) 152, 611
BtsIMutI CAGTG 4 cut(s) 309, 341, 628, 1347
Cac8I GCNNGC 5 cut(s) 320, 656, 715, 830, 1229
CciI TCATGA 1 cut(s) 1090
CfoI GCGC 1 cut(s) 611
Cfr13I GGNCC 3 cut(s) 1031, 1198, 1323
Cfr42I CCGCGG 2 cut(s) 655, 783
ClaI ATCGAT 1 cut(s) 954
CseI GACGC 1 cut(s) 372
Csp6I GTAC 7 cut(s) 82, 217, 429, 528, 585, 976, 1057
CviAII CATG 8 cut(s) 22, 170, 327, 802, 829, 949, 1075, 1091
CviQI GTAC 7 cut(s) 82, 217, 429, 528, 585, 976, 1057
DdeI CTNAG 3 cut(s) 612, 999, 1295
DpnI GATC 7 cut(s) 599, 816, 843, 953, 1103, 1293, 1339
DpnII GATC 7 cut(s) 597, 814, 841, 951, 1101, 1291, 1337
DrdI GACNNNNNNGTC 1 cut(s) 355
DseDI GACNNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 2 cut(s) 44, 1005
EarI CTCTTC 2 cut(s) 44, 1005
Eco130I CCWWGG 1 cut(s) 601
Eco47I GGWCC 2 cut(s) 1031, 1198
Eco88I CYCGRG 2 cut(s) 450, 928
EcoRI GAATTC 1 cut(s) 775
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 8 cut(s) 25, 173, 330, 805, 832, 952, 1078, 1094
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 2 cut(s) 763, 1044
FatI CATG 8 cut(s) 21, 169, 326, 801, 828, 948, 1074, 1090
FauI CCCGC 9 cut(s) 647, 651, 718, 722, 775, 878, 926, 931, 1054
Fnu4HI GCNGC 3 cut(s) 316, 1204, 1239
FokI GGATG 2 cut(s) 139, 618
Fsp4HI GCNGC 3 cut(s) 316, 1204, 1239
GlaI GCGC 1 cut(s) 610
GluI GCNGC 3 cut(s) 316, 1204, 1239
GsaI CCCAGC 1 cut(s) 295
GsuI CTGGAG 1 cut(s) 175
HaeIII GGCC 2 cut(s) 536, 1325
HapII CCGG 5 cut(s) 719, 729, 747, 919, 960
HgaI GACGC 1 cut(s) 372
HhaI GCGC 1 cut(s) 611
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 8 cut(s) 25, 173, 330, 805, 832, 952, 1078, 1094
Hin6I GCGC 1 cut(s) 609
HinP1I GCGC 1 cut(s) 609
HincII GTYRAC 3 cut(s) 799, 807, 824
HindII GTYRAC 3 cut(s) 799, 807, 824
HindIII AAGCTT 1 cut(s) 1229
HinfI GANTC 5 cut(s) 198, 207, 331, 786, 956
HpaII CCGG 5 cut(s) 719, 729, 747, 919, 960
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 6 cut(s) 799, 807, 824, 972, 985, 1057
Hpy188I TCNGA 9 cut(s) 255, 378, 554, 676, 791, 945, 967, 1106, 1296
Hpy188III TCNNGA 2 cut(s) 458, 1091
Hpy8I GTNNAC 6 cut(s) 799, 807, 824, 972, 985, 1057
Hpy99I CGWCG 2 cut(s) 388, 1088
HpyAV CCTTC 4 cut(s) 66, 244, 405, 585
HpyCH4III ACNGT 3 cut(s) 859, 1049, 1088
HpyCH4IV ACGT 4 cut(s) 795, 974, 1053, 1095
HpyCH4V TGCA 2 cut(s) 444, 705
HpyF10VI GCNNNNNNNGC 3 cut(s) 677, 719, 1067
HpyF3I CTNAG 3 cut(s) 612, 999, 1295
HpySE526I ACGT 4 cut(s) 795, 974, 1053, 1095
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 8 cut(s) 25, 173, 330, 805, 832, 952, 1078, 1094
HspAI GCGC 1 cut(s) 609
KspI CCGCGG 2 cut(s) 655, 783
Kzo9I GATC 7 cut(s) 597, 814, 841, 951, 1101, 1291, 1337
LmnI GCTCC 4 cut(s) 30, 148, 256, 968
Lsp1109I GCAGC 2 cut(s) 327, 1190
LweI GCATC 1 cut(s) 596
MaeII ACGT 4 cut(s) 795, 974, 1053, 1095
MaeIII GTNAC 3 cut(s) 623, 1049, 1156
MalI GATC 7 cut(s) 599, 816, 843, 953, 1103, 1293, 1339
MbiI CCGCTC 1 cut(s) 933
MboI GATC 7 cut(s) 597, 814, 841, 951, 1101, 1291, 1337
MboII GAAGA 5 cut(s) 31, 34, 117, 358, 1022
MflI RGATCY 1 cut(s) 841
MluCI AATT 8 cut(s) 560, 775, 835, 879, 1173, 1251, 1258, 1286
MlyI GAGTC 1 cut(s) 201
MseI TTAA 2 cut(s) 896, 1040
MspA1I CMGCKG 3 cut(s) 654, 782, 1203
MspI CCGG 5 cut(s) 719, 729, 747, 919, 960
MspR9I CCNGG 4 cut(s) 193, 719, 730, 748
MvaI CCWGG 1 cut(s) 193
MvnI CGCG 3 cut(s) 654, 782, 1061
MwoI GCNNNNNNNGC 3 cut(s) 677, 719, 1067
NciI CCSGG 3 cut(s) 719, 730, 748
NdeII GATC 7 cut(s) 597, 814, 841, 951, 1101, 1291, 1337
NlaIII CATG 8 cut(s) 25, 173, 330, 805, 832, 952, 1078, 1094
NlaIV GGNNCC 5 cut(s) 252, 843, 964, 1032, 1199
NmeAIII GCCGAG 1 cut(s) 562
NmuCI GTSAC 2 cut(s) 623, 1156
NspI RCATGY 3 cut(s) 805, 832, 1078
PaeI GCATGC 1 cut(s) 832
PagI TCATGA 1 cut(s) 1090
PciI ACATGT 2 cut(s) 801, 1074
PcsI WCGNNNNNNNCGW 2 cut(s) 1092, 1323
PfeI GAWTC 4 cut(s) 198, 331, 786, 956
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 3 cut(s) 317, 1205, 1240
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
Ppu21I YACGTR 2 cut(s) 975, 1054
PscI ACATGT 2 cut(s) 801, 1074
Psp6I CCWGG 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 291
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 5 cut(s) 252, 843, 964, 1032, 1199
PspPI GGNCC 3 cut(s) 1031, 1198, 1323
PsuI RGATCY 1 cut(s) 841
RsaI GTAC 7 cut(s) 83, 218, 430, 529, 586, 977, 1058
RsaNI GTAC 7 cut(s) 82, 217, 429, 528, 585, 976, 1057
SacII CCGCGG 2 cut(s) 655, 783
SaqAI TTAA 2 cut(s) 896, 1040
SatI GCNGC 3 cut(s) 316, 1204, 1239
Sau3AI GATC 7 cut(s) 597, 814, 841, 951, 1101, 1291, 1337
Sau96I GGNCC 3 cut(s) 1031, 1198, 1323
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 4 cut(s) 193, 719, 730, 748
SfaNI GCATC 1 cut(s) 596
Sfr303I CCGCGG 2 cut(s) 655, 783
SgrBI CCGCGG 2 cut(s) 655, 783
SinI GGWCC 2 cut(s) 1031, 1198
SphI GCATGC 1 cut(s) 832
Sse9I AATT 8 cut(s) 560, 775, 835, 879, 1173, 1251, 1258, 1286
StyD4I CCNGG 4 cut(s) 191, 717, 728, 746
StyI CCWWGG 1 cut(s) 601
TaaI ACNGT 3 cut(s) 859, 1049, 1088
TaiI ACGT 4 cut(s) 798, 977, 1056, 1098
TaqI TCGA 2 cut(s) 954, 1083
TaqII GACCGA 1 cut(s) 1048
TasI AATT 8 cut(s) 560, 775, 835, 879, 1173, 1251, 1258, 1286
TatI WGTACW 1 cut(s) 428
TauI GCSGC 1 cut(s) 1241
TfiI GAWTC 4 cut(s) 198, 331, 786, 956
Tru1I TTAA 2 cut(s) 896, 1040
Tru9I TTAA 2 cut(s) 896, 1040
TscAI CASTG 4 cut(s) 316, 341, 628, 1347
TseFI GTSAC 2 cut(s) 623, 1156
TseI GCWGC 2 cut(s) 315, 1203
Tsp45I GTSAC 2 cut(s) 623, 1156
TspDTI ATGAA 3 cut(s) 654, 662, 1253
TspGWI ACGGA 1 cut(s) 568
TspRI CASTG 4 cut(s) 316, 341, 628, 1347
Van91I CCANNNNNTGG 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 1031, 1198
XapI RAATTY 6 cut(s) 560, 775, 835, 1173, 1258, 1286
XceI RCATGY 3 cut(s) 805, 832, 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.