Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012847

Physical Location & Seq

Genomic Coordinates Reverse (-)

15538141 .. 15538889

Gene Structure 749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCAACCATCCACCAACATTTTTAGCCTCCATGGTTGTCCACCTTCGTACCTTTCCCATATTCCTACATCCTCACCATTTTGCGGACAAAACCCTAATCCATTCTTCAGCTTCGAAACTGGCGTGAACACTTCACAGTTCATGAGTTTGATCAGCAGCAACAACTCGACCTCAGATGAAGCAGAAGAGAATCATAAGGAGATAATAAATGAGAGGAAGCAAAAGAGGAAGATATCTAACAGAGAATCGGCAAGAAGATCGCGTATGAGGAAGCAGAGACAAGTGGATGAGCTTTGGTCACAGGTGATGTGGCTTAGGGATGAGAATCATCAGCTGCTTCGTAAGCTTAACTGCGTTTTAGAGTCTCAAGAGAAGGTTATTGAAGAGAATGTTCAGCTCAAAGAGGAAACCACTGAGCTTAAGCAAATGATTAGTGATATGCAGCTTCAGAATCAGAGTCCTTTCTCTTGCATCAGAGACGACGACGACGTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

165

Amino Acids

19.26

Weight (kDa)

5.61

Isoelectric Point (pI)

69.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	71 - 116	8.8e-08	Basic region leucine zipper
bZIP_1	PF00170	72 - 118	7.6e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30530 AT5G38800
fragaria_vesca	FvH4_6g46000
malus_domestica	MD09G1078300.v1.1 MD17G1068700.v1.1
prunus_persica	Prupe.3G246000_v2.0.a1
pyrus_communis	pycom09g00510
rosa_chinensis	RchiOBHm_Chr2g0164231
rosa_laevigata	RLG00000021446
rosa_multiflora	Rmu_co8502197.1_g000001 Rmu_sc0001427.1_g000013
rosa_roxburghii	Rroxscaffold_2G00086700
rosa_rugosa	Rorug02G0507200
rosa_samantha	Rh2AG575500 Rh2BG586200 Rh2CG557100 Rh2DG595800
rosa_wichuraiana	Rw2G047640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	262
AciI	CCGC	1 cut(s)	84
AcuI	CTGAAG	2 cut(s)	91, 431
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflII	CTTAAG	1 cut(s)	419
AgsI	TTSAA	1 cut(s)	383
AluBI	AGCT	7 cut(s)	111, 292, 334, 346, 397, 418, 445
AluI	AGCT	7 cut(s)	111, 292, 334, 346, 397, 418, 445
Alw26I	GTCTC	3 cut(s)	271, 369, 471
ApeKI	GCWGC	3 cut(s)	156, 334, 442
AsuHPI	GGTGA	2 cut(s)	66, 316
AsuII	TTCGAA	1 cut(s)	114
BaeI	ACNNNNGTAYC	2 cut(s)	32, 65
BbvI	GCAGC	3 cut(s)	168, 321, 454
BccI	CCATC	1 cut(s)	16
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	3 cut(s)	271, 369, 471
BfrI	CTTAAG	1 cut(s)	419
BisI	GCNGC	3 cut(s)	157, 335, 443
BlsI	GCNGC	3 cut(s)	158, 336, 444
BmsI	GCATC	1 cut(s)	480
Bpu10I	CCTNAGC	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	4 cut(s)	8, 68, 292, 325
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	186, 405
BseNI	ACTGG	1 cut(s)	124
BseXI	GCAGC	3 cut(s)	168, 321, 454
Bsh1236I	CGCG	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	3 cut(s)	271, 369, 471
BsmBI	CGTCTC	1 cut(s)	471
Bsp119I	TTCGAA	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	150, 257
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	1 cut(s)	84
BspCNI	CTCAG	2 cut(s)	185, 406
BspFNI	CGCG	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	141
BspT104I	TTCGAA	1 cut(s)	114
BspTI	CTTAAG	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	150, 257
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	2 cut(s)	180, 378
BstAFI	CTTAAG	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	114
BstDEI	CTNAG	3 cut(s)	172, 314, 414
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	4 cut(s)	8, 68, 292, 325
BstFNI	CGCG	1 cut(s)	262
BstKTI	GATC	2 cut(s)	153, 260
BstMAI	GTCTC	3 cut(s)	271, 369, 471
BstMBI	GATC	2 cut(s)	150, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstUI	CGCG	1 cut(s)	262
BstV1I	GCAGC	3 cut(s)	168, 321, 454
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	4 cut(s)	8, 68, 292, 325
BtsIMutI	CAGTG	1 cut(s)	411
CciI	TCATGA	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	2 cut(s)	32, 142
CviJI	RGCY	9 cut(s)	27, 111, 292, 313, 334, 346, 397, 418, 445
CviKI_1	RGCY	9 cut(s)	27, 111, 292, 313, 334, 346, 397, 418, 445
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	3 cut(s)	172, 314, 414
DpnI	GATC	2 cut(s)	152, 259
DpnII	GATC	2 cut(s)	150, 257
Eam1104I	CTCTTC	2 cut(s)	180, 378
EarI	CTCTTC	2 cut(s)	180, 378
Eco130I	CCWWGG	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	234
Eco57I	CTGAAG	2 cut(s)	91, 431
EcoRV	GATATC	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	471
FaeI	CATG	2 cut(s)	35, 145
FaiI	YATR	7 cut(s)	33, 60, 143, 195, 266, 440, 496
FatI	CATG	2 cut(s)	31, 141
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	157, 335, 443
FokI	GGATG	3 cut(s)	55, 299, 332
Fsp4HI	GCNGC	3 cut(s)	157, 335, 443
GluI	GCNGC	3 cut(s)	157, 335, 443
Hin1II	CATG	2 cut(s)	35, 145
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	6 cut(s)	190, 245, 325, 362, 451, 457
HphI	GGTGA	2 cut(s)	66, 316
Hpy166II	GTNNAC	2 cut(s)	41, 127
Hpy188I	TCNGA	4 cut(s)	175, 450, 456, 476
Hpy188III	TCNNGA	2 cut(s)	142, 368
Hpy8I	GTNNAC	2 cut(s)	41, 127
Hpy99I	CGWCG	3 cut(s)	485, 488, 491
HpyAV	CCTTC	2 cut(s)	54, 367
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	3 cut(s)	4, 442, 471
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	3 cut(s)	172, 314, 414
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	2 cut(s)	35, 145
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	150, 257
LpnPI	CCDG	2 cut(s)	105, 287
Lsp1109I	GCAGC	3 cut(s)	168, 321, 454
LweI	GCATC	1 cut(s)	480
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	297
MalI	GATC	2 cut(s)	152, 259
MboI	GATC	2 cut(s)	150, 257
MboII	GAAGA	5 cut(s)	97, 197, 241, 267, 395
MlyI	GAGTC	2 cut(s)	371, 466
MnlI	CCTC	7 cut(s)	38, 82, 181, 207, 219, 261, 397
MseI	TTAA	2 cut(s)	348, 420
MspA1I	CMGCKG	1 cut(s)	334
MspCI	CTTAAG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	343
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	2 cut(s)	150, 257
NlaIII	CATG	2 cut(s)	35, 145
NmuCI	GTSAC	1 cut(s)	297
NspV	TTCGAA	1 cut(s)	114
PagI	TCATGA	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 486
PfeI	GAWTC	4 cut(s)	190, 245, 325, 451
PkrI	GCNGC	3 cut(s)	158, 336, 444
PleI	GAGTC	2 cut(s)	370, 465
PpsI	GAGTC	2 cut(s)	370, 465
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	348, 420
SatI	GCNGC	3 cut(s)	157, 335, 443
Sau3AI	GATC	2 cut(s)	150, 257
SchI	GAGTC	2 cut(s)	371, 466
SfaNI	GCATC	1 cut(s)	480
SfuI	TTCGAA	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	366, 419
SmoI	CTYRAG	2 cut(s)	366, 419
SsiI	CCGC	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	138
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	2 cut(s)	114, 167
TfiI	GAWTC	4 cut(s)	190, 245, 325, 451
Tru1I	TTAA	2 cut(s)	348, 420
Tru9I	TTAA	2 cut(s)	348, 420
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	297
TseI	GCWGC	3 cut(s)	156, 334, 442
Tsp45I	GTSAC	1 cut(s)	297
TspDTI	ATGAA	2 cut(s)	130, 192
TspRI	CASTG	1 cut(s)	418
Vha464I	CTTAAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.