Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0012847

Physical Location & Seq

Genomic Coordinates Forward (+)

5500678 .. 5501286

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1078300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCAGCCCGGTGAGGTCACCGGACTCCATTACCTCGCTCCCTTGAGCTCATCATCTCCCTACCCTCCTCATTTCAGCATGAGCACTCAAAGCAACGCAACTGCGTTTCAATTTAACCGGTTTTCTAGCCCATTGTACAATTTTCAATTCCCTAATTCCCAACTTCAAGAAATTAATAACAATCCACAGCAACCATCCTCGTTCAGTAGTTCAACCTCTGATGAGGCTGATGAGCAGCAACTCAGTCTCATCAACGAGAGGAAACAAAGACGAATGATATCTAACAGAGAATCTGCGCGCAGATCACGTATGCGCAAGCAGAAGCACTTGGATGAGCTCTGGTCACAAGTCGTTTGGCTCAGAAATGAGAATCACCAACTTGTGGACAAGCTGAACCATGTCTCAGAGTCCCACGACAAGGTTCTGGAAGAGAATGCTCAGCTCAAAGAGGAAGCTTCTGAGCTTCGCCAAATGGTCAATGACCTGCAACTGCACAGTCCTTATAATCCTTTCCTTCGGGACCTCGAGGATGTCCCATGCAACACTGCTTATCTGAGAACGGAGTCCTCAAACCCGTCCATCACAAGTTCCATGGATTTGCTAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

203

Amino Acids

23.31

Weight (kDa)

5.63

Isoelectric Point (pI)

70.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	86 - 131	1.6e-08	Basic region leucine zipper
bZIP_1	PF00170	87 - 140	4.2e-13	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30530 AT5G38800
fragaria_vesca	FvH4_6g46000
malus_domestica	MD09G1078300.v1.1 MD17G1068700.v1.1
prunus_persica	Prupe.3G246000_v2.0.a1
pyrus_communis	pycom09g00510
rosa_chinensis	RchiOBHm_Chr2g0164231
rosa_laevigata	RLG00000021446
rosa_multiflora	Rmu_co8502197.1_g000001 Rmu_sc0001427.1_g000013
rosa_roxburghii	Rroxscaffold_2G00086700
rosa_rugosa	Rorug02G0507200
rosa_samantha	Rh2AG575500 Rh2BG586200 Rh2CG557100 Rh2DG595800
rosa_wichuraiana	Rw2G047640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AbsI	CCTCGAGG	1 cut(s)	524
Acc16I	TGCGCA	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	492
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccII	CGCG	1 cut(s)	298
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	382, 418
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	110, 146, 167, 213
AluBI	AGCT	6 cut(s)	48, 337, 391, 442, 455, 463
AluI	AGCT	6 cut(s)	48, 337, 391, 442, 455, 463
Alw21I	GWGCWC	3 cut(s)	50, 86, 339
Alw26I	GTCTC	2 cut(s)	251, 406
Ama87I	CYCGRG	1 cut(s)	524
ApeKI	GCWGC	2 cut(s)	4, 235
AseI	ATTAAT	1 cut(s)	174
AsiGI	ACCGGT	1 cut(s)	117
AspLEI	GCGC	3 cut(s)	298, 300, 315
AspS9I	GGNCC	1 cut(s)	520
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	3 cut(s)	10, 23, 365
AvaI	CYCGRG	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	520
BanII	GRGCYC	2 cut(s)	50, 339
Bbv12I	GWGCWC	3 cut(s)	50, 86, 339
BbvI	GCAGC	2 cut(s)	16, 247
BccI	CCATC	2 cut(s)	202, 587
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	2 cut(s)	251, 406
BfaI	CTAG	2 cut(s)	126, 602
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	2 cut(s)	5, 236
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	2 cut(s)	6, 237
Bme1390I	CCNGG	1 cut(s)	9
Bme18I	GGWCC	1 cut(s)	520
BmeT110I	CYCGRG	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	521
BmrFI	CCNGG	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	64
BpuMI	CCSGG	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	591
BsaWI	WCCGGW	2 cut(s)	20, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 418
Bse118I	RCCGGY	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	3 cut(s)	194, 337, 535
BseLI	CCNNNNNNNGG	2 cut(s)	382, 418
BseMII	CTCAG	6 cut(s)	256, 373, 417, 450, 452, 545
BsePI	GCGCGC	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	16, 247
BsgI	GTGCAG	1 cut(s)	476
Bsh1236I	CGCG	1 cut(s)	298
BshTI	ACCGGT	1 cut(s)	117
BsiHKAI	GWGCWC	3 cut(s)	50, 86, 339
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	3 cut(s)	9, 21, 118
BslFI	GGGAC	3 cut(s)	394, 518, 533
BslI	CCNNNNNNNGG	2 cut(s)	382, 418
BsmAI	GTCTC	2 cut(s)	251, 406
BsmFI	GGGAC	3 cut(s)	394, 518, 533
BsmI	GAATGC	1 cut(s)	439
BsoBI	CYCGRG	1 cut(s)	524
Bsp1286I	GDGCHC	3 cut(s)	50, 86, 339
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	302
Bsp1720I	GCTNAGC	1 cut(s)	438
Bsp19I	CCATGG	1 cut(s)	591
BspCNI	CTCAG	6 cut(s)	255, 372, 416, 451, 451, 546
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	521
BspMI	ACCTGC	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	591
BssHII	GCGCGC	1 cut(s)	296
BssMI	GATC	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	591
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	423
BstAUI	TGTACA	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	298, 317
BstDEI	CTNAG	6 cut(s)	242, 359, 403, 438, 459, 554
BstDSI	CCRYGG	1 cut(s)	591
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	3 cut(s)	194, 337, 535
BstFNI	CGCG	1 cut(s)	298
BstHHI	GCGC	3 cut(s)	298, 300, 315
BstKTI	GATC	1 cut(s)	305
BstMAI	GTCTC	2 cut(s)	251, 406
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	7
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	16, 247
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	194, 337, 535
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	1 cut(s)	543
BveI	ACCTGC	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	298, 317
CfoI	GCGC	3 cut(s)	298, 300, 315
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	136
CspAI	ACCGGT	1 cut(s)	117
CviAII	CATG	4 cut(s)	79, 398, 537, 592
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	6 cut(s)	242, 359, 403, 438, 459, 554
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Ecl136II	GAGCTC	2 cut(s)	48, 337
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	2 cut(s)	50, 339
Eco32I	GATATC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	520
Eco53kI	GAGCTC	2 cut(s)	48, 337
Eco88I	CYCGRG	1 cut(s)	524
Eco91I	GGTNACC	1 cut(s)	16
EcoICRI	GAGCTC	2 cut(s)	48, 337
EcoO109I	RGGNCCY	1 cut(s)	520
EcoO65I	GGTNACC	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	2 cut(s)	50, 339
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	4 cut(s)	82, 401, 540, 595
FaiI	YATR	6 cut(s)	80, 311, 399, 504, 538, 593
FaqI	GGGAC	3 cut(s)	394, 518, 533
FatI	CATG	4 cut(s)	78, 397, 536, 591
Fnu4HI	GCNGC	2 cut(s)	5, 236
FokI	GGATG	3 cut(s)	181, 344, 542
FriOI	GRGCYC	2 cut(s)	50, 339
Fsp4HI	GCNGC	2 cut(s)	5, 236
FspBI	CTAG	2 cut(s)	126, 602
FspI	TGCGCA	1 cut(s)	314
GlaI	GCGC	3 cut(s)	297, 299, 314
GluI	GCNGC	2 cut(s)	5, 236
HapII	CCGG	3 cut(s)	9, 21, 118
HhaI	GCGC	3 cut(s)	298, 300, 315
Hin1II	CATG	4 cut(s)	82, 401, 540, 595
Hin6I	GCGC	3 cut(s)	296, 298, 313
HinP1I	GCGC	3 cut(s)	296, 298, 313
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	5 cut(s)	24, 290, 370, 407, 563
HpaII	CCGG	3 cut(s)	9, 21, 118
HphI	GGTGA	3 cut(s)	10, 23, 365
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	5 cut(s)	220, 362, 406, 460, 555
Hpy188III	TCNNGA	3 cut(s)	167, 425, 518
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	4 cut(s)	4, 487, 493, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	6 cut(s)	242, 359, 403, 438, 459, 554
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	4 cut(s)	82, 401, 540, 595
HspAI	GCGC	3 cut(s)	296, 298, 313
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	6 cut(s)	22, 34, 131, 325, 410, 497
Lsp1109I	GCAGC	2 cut(s)	16, 247
MaeI	CTAG	2 cut(s)	126, 602
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	2 cut(s)	16, 342
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	1 cut(s)	440
MhlI	GDGCHC	3 cut(s)	50, 86, 339
MluCI	AATT	5 cut(s)	110, 139, 146, 154, 171
MlyI	GAGTC	3 cut(s)	18, 416, 572
MseI	TTAA	2 cut(s)	114, 174
MslI	CAYNNNNRTG	1 cut(s)	330
MspI	CCGG	3 cut(s)	9, 21, 118
MspR9I	CCNGG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	439
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	9
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	1 cut(s)	302
NlaIII	CATG	4 cut(s)	82, 401, 540, 595
NlaIV	GGNNCC	1 cut(s)	521
NmuCI	GTSAC	2 cut(s)	16, 342
NsbI	TGCGCA	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	524
PauI	GCGCGC	1 cut(s)	296
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	2 cut(s)	290, 370
PflMI	CCANNNNNTGG	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	6, 237
PleI	GAGTC	3 cut(s)	18, 415, 571
PpsI	GAGTC	3 cut(s)	18, 415, 571
Ppu21I	YACGTR	1 cut(s)	308
PpuMI	RGGWCCY	1 cut(s)	520
PshBI	ATTAAT	1 cut(s)	174
PsiI	TTATAA	1 cut(s)	504
Psp124BI	GAGCTC	2 cut(s)	50, 339
Psp5II	RGGWCCY	1 cut(s)	520
PspEI	GGTNACC	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	521
PspPI	GGNCC	1 cut(s)	520
PspPPI	RGGWCCY	1 cut(s)	520
PspXI	VCTCGAGB	1 cut(s)	524
PteI	GCGCGC	1 cut(s)	296
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	330
SacI	GAGCTC	2 cut(s)	50, 339
SaqAI	TTAA	2 cut(s)	114, 174
SatI	GCNGC	2 cut(s)	5, 236
Sau3AI	GATC	1 cut(s)	302
Sau96I	GGNCC	1 cut(s)	520
SchI	GAGTC	3 cut(s)	18, 416, 572
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	3 cut(s)	50, 86, 339
Sfr274I	CTCGAG	1 cut(s)	524
SinI	GGWCC	1 cut(s)	520
SlaI	CTCGAG	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	2 cut(s)	43, 524
SmoI	CTYRAG	2 cut(s)	43, 524
Sse9I	AATT	5 cut(s)	110, 139, 146, 154, 171
SspMI	CTAG	2 cut(s)	126, 602
SstI	GAGCTC	2 cut(s)	50, 339
StyD4I	CCNGG	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	525
TasI	AATT	5 cut(s)	110, 139, 146, 154, 171
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	290, 370
Tru1I	TTAA	2 cut(s)	114, 174
Tru9I	TTAA	2 cut(s)	114, 174
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	2 cut(s)	16, 342
TseI	GCWGC	2 cut(s)	4, 235
Tsp45I	GTSAC	2 cut(s)	16, 342
TspGWI	ACGGA	1 cut(s)	575
TspRI	CASTG	1 cut(s)	550
Van91I	CCANNNNNTGG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	520
VspI	ATTAAT	1 cut(s)	174
XhoI	CTCGAG	1 cut(s)	524
XspI	CTAG	2 cut(s)	126, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.