Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0012847

Physical Location & Seq

Genomic Coordinates Forward (+)

5565327 .. 5570559

Gene Structure 5233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1068700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCAGCCCGGTGAGGTCACTGGAATCCATTACCTCGTTCCTTCGAGCTCATCATCTCCCTACCCTCCTTTTAGCATGAGCACTCAAAGCAATGCAACCGCTTTTGAATTCAACCGGTTTTCTAGCCCATTGTACAATTTCCAATATCCTACTTCCCAACTTCAAGAAGTTAATAACAATCCACAGCAACCATCGTCCTTCAGTAGTAACTCAACCTCTGATGAGGCTGATGAGCAGCAACTCAGTCTCATCAATGAGAGGAAACAAAGACGAATGATATCTAACAGAGAATCTGCACGCAGATCACGTATGCGCAAGCAGAAGCACCTTGATGAACTCTGGTCACAAGTGGTTTGGCTCAGAAAGGAGAATCACCAAATTTTGGAAAAGCTGAACCATGTCTCAGAGTCACATGAGAAGGTTCTGCAAGAGAATGCTCAGCTCAAAGAGGAAGCTTCCGAGCTTCGCCAAATGCTCAATGACCTGCAACTGCACAGTCCTTATCATCCTCGAGACCTCGAGGATGTCCCTTGCAACACAGCTTATCTGAGAGCAGAGTCCTCAAACCAGTCCATCACAAGTTCCATGGATTTGCTAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

201

Amino Acids

23.11

Weight (kDa)

5.81

Isoelectric Point (pI)

74.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	86 - 132	1.6e-08	Basic region leucine zipper
bZIP_1	PF00170	87 - 145	4.4e-13	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30530 AT5G38800
fragaria_vesca	FvH4_6g46000
malus_domestica	MD09G1078300.v1.1 MD17G1068700.v1.1
prunus_persica	Prupe.3G246000_v2.0.a1
pyrus_communis	pycom09g00510
rosa_chinensis	RchiOBHm_Chr2g0164231
rosa_laevigata	RLG00000021446
rosa_multiflora	Rmu_co8502197.1_g000001 Rmu_sc0001427.1_g000013
rosa_roxburghii	Rroxscaffold_2G00086700
rosa_rugosa	Rorug02G0507200
rosa_samantha	Rh2AG575500 Rh2BG586200 Rh2CG557100 Rh2DG595800
rosa_wichuraiana	Rw2G047640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	518
Acc16I	TGCGCA	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	492
AccB7I	CCANNNNNTGG	1 cut(s)	382
AciI	CCGC	1 cut(s)	99
AcsI	RAATTY	2 cut(s)	107, 378
AcuI	CTGAAG	1 cut(s)	184
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgeI	ACCGGT	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	107, 112, 164
AluBI	AGCT	6 cut(s)	48, 391, 442, 455, 463, 542
AluI	AGCT	6 cut(s)	48, 391, 442, 455, 463, 542
Alw21I	GWGCWC	2 cut(s)	50, 83
Alw26I	GTCTC	3 cut(s)	251, 406, 507
Ama87I	CYCGRG	2 cut(s)	510, 518
ApeKI	GCWGC	2 cut(s)	4, 235
ApoI	RAATTY	2 cut(s)	107, 378
AsiGI	ACCGGT	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	315
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	23, 365
AvaI	CYCGRG	2 cut(s)	510, 518
BanII	GRGCYC	1 cut(s)	50
Bbv12I	GWGCWC	2 cut(s)	50, 83
BbvI	GCAGC	2 cut(s)	16, 247
BccI	CCATC	2 cut(s)	199, 581
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	3 cut(s)	251, 406, 507
BfaI	CTAG	2 cut(s)	123, 596
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	2 cut(s)	5, 236
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	2 cut(s)	6, 237
Bme1390I	CCNGG	1 cut(s)	9
BmeT110I	CYCGRG	2 cut(s)	510, 518
BmrFI	CCNGG	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	585
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	25, 568
Bse3DI	GCAATG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	2 cut(s)	505, 529
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	5 cut(s)	256, 373, 417, 452, 539
BseNI	ACTGG	2 cut(s)	25, 568
BseXI	GCAGC	2 cut(s)	16, 247
BsgI	GTGCAG	2 cut(s)	279, 476
BshTI	ACCGGT	1 cut(s)	114
BsiHKAI	GWGCWC	2 cut(s)	50, 83
BsiHKCI	CYCGRG	2 cut(s)	510, 518
BsiSI	CCGG	2 cut(s)	9, 115
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	3 cut(s)	251, 406, 507
BsmFI	GGGAC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	439
Bso31I	GGTCTC	1 cut(s)	507
BsoBI	CYCGRG	2 cut(s)	510, 518
Bsp1286I	GDGCHC	2 cut(s)	50, 83
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	302
Bsp1720I	GCTNAGC	1 cut(s)	438
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	1 cut(s)	99
BspCNI	CTCAG	5 cut(s)	255, 372, 416, 451, 540
BspMI	ACCTGC	1 cut(s)	492
BspTNI	GGTCTC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	114
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	25, 568
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	298, 317
BstDEI	CTNAG	5 cut(s)	242, 359, 403, 438, 548
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	2 cut(s)	505, 529
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	1 cut(s)	305
BstMAI	GTCTC	3 cut(s)	251, 406, 507
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	7
BstV1I	GCAGC	2 cut(s)	16, 247
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	2 cut(s)	505, 529
BtsIMutI	CAGTG	1 cut(s)	18
BveI	ACCTGC	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	298, 317
CfoI	GCGC	1 cut(s)	315
Cfr10I	RCCGGY	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	114
CviAII	CATG	4 cut(s)	76, 398, 413, 586
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	5 cut(s)	242, 359, 403, 438, 548
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	184
Eco88I	CYCGRG	2 cut(s)	510, 518
EcoICRI	GAGCTC	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	107
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	4 cut(s)	79, 401, 416, 589
FaiI	YATR	5 cut(s)	77, 311, 399, 414, 587
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	4 cut(s)	75, 397, 412, 585
Fnu4HI	GCNGC	2 cut(s)	5, 236
FokI	GGATG	2 cut(s)	492, 536
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	5, 236
FspBI	CTAG	2 cut(s)	123, 596
FspI	TGCGCA	1 cut(s)	314
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	2 cut(s)	5, 236
HapII	CCGG	2 cut(s)	9, 115
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	4 cut(s)	79, 401, 416, 589
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	5 cut(s)	24, 290, 370, 407, 557
HpaII	CCGG	2 cut(s)	9, 115
HphI	GGTGA	2 cut(s)	23, 365
Hpy188I	TCNGA	5 cut(s)	220, 362, 406, 460, 549
Hpy188III	TCNNGA	2 cut(s)	164, 512
HpyAV	CCTTC	3 cut(s)	51, 208, 412
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	7 cut(s)	4, 95, 296, 427, 487, 493, 534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	5 cut(s)	242, 359, 403, 438, 548
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	4 cut(s)	79, 401, 416, 589
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	302
LpnPI	CCDG	6 cut(s)	6, 22, 128, 325, 497, 581
Lsp1109I	GCAGC	2 cut(s)	16, 247
MaeI	CTAG	2 cut(s)	123, 596
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	4 cut(s)	16, 206, 342, 408
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MhlI	GDGCHC	2 cut(s)	50, 83
MluCI	AATT	3 cut(s)	107, 136, 378
MlyI	GAGTC	2 cut(s)	416, 566
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	330
MspI	CCGG	2 cut(s)	9, 115
MspR9I	CCNGG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	439
MwoI	GCNNNNNNNGC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	9
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	1 cut(s)	302
NlaIII	CATG	4 cut(s)	79, 401, 416, 589
NmuCI	GTSAC	3 cut(s)	16, 342, 408
NsbI	TGCGCA	1 cut(s)	314
PaeR7I	CTCGAG	2 cut(s)	510, 518
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	3 cut(s)	24, 290, 370
PflMI	CCANNNNNTGG	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	6, 237
PleI	GAGTC	2 cut(s)	415, 565
PpsI	GAGTC	2 cut(s)	415, 565
Ppu21I	YACGTR	1 cut(s)	308
Psp124BI	GAGCTC	1 cut(s)	50
PspXI	VCTCGAGB	1 cut(s)	518
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	330
SacI	GAGCTC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	2 cut(s)	5, 236
Sau3AI	GATC	1 cut(s)	302
SchI	GAGTC	2 cut(s)	416, 566
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	2 cut(s)	50, 83
Sfr274I	CTCGAG	2 cut(s)	510, 518
SlaI	CTCGAG	2 cut(s)	510, 518
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	2 cut(s)	510, 518
SmoI	CTYRAG	2 cut(s)	510, 518
Sse9I	AATT	3 cut(s)	107, 136, 378
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	2 cut(s)	123, 596
SstI	GAGCTC	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	3 cut(s)	44, 511, 519
TasI	AATT	3 cut(s)	107, 136, 378
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	24, 290, 370
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	3 cut(s)	16, 342, 408
TseI	GCWGC	2 cut(s)	4, 235
Tsp45I	GTSAC	3 cut(s)	16, 342, 408
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	382
XapI	RAATTY	2 cut(s)	107, 378
XhoI	CTCGAG	2 cut(s)	510, 518
XspI	CTAG	2 cut(s)	123, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.