Rorug02G0507200
BZIP Family

Ocs element-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012847
Physical Location & Seq
Forward (+)
63868674 .. 63870652
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0507200.1

Sequence Viewer

Length: 798 bp
ATGGCAACGTCTTCAATCCAGCAGTCAGCATTTGCCGGCCAGACCGTTCTGAAGCAATCGAATGAGCTCATCCAAAAGATTGGCGGCCTTGGTGACGGTCGCATCACCATGAGGCGCACTGTTAAAAGTGCTCCCGAAAGCATATGGTATGGCCCTGACCGCCCAAAATACTTGGGACCATTCTCCGAGCAAACTCCATCCTACTTGACTGGTGAATTCCCAGGTGACTACGGATGGGACACTGCTGGACTATCTGCAGACCCCGAGACCTTTGCCAAAAACCGTGAGCTTGAGGTGATCCACAGCCGATGGGCAATGCTTGGTGCATTGGGCTGCGTCTTCCCAGAAGTCTTGTCCAAGAATGGTGTCAAGTTCGGTGAGGCTGTTTGGTTCAAGGCCGGGTCCCAAATCTTTTCAGAGGGCGGCCTTGACTATCTTGGCAACCCGAACCTTGTCCATGCCCAGAGCATTTTGGCAATCTGGGCTGTCCAAGTTGTCCTCATGGGATTTGTTGAGGGATACAGAGTCGGTGGAGGACCACTTGGCGAAGGTCTGGATCCACTTTACCCTGGAGGATCATTTGACCCACTTGGACTCGCTGATGATCCTGAAGCCTTTGCTGAACTGAAGGTGAAGGAACTCAAAAATGGGCGGCTGGCAATGACCTCAATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGAAAGGGTCCCGTTGAGAACCTCTATGACCATGTTGCTGATCCAGTGGCTAACAATGCATGGGCTTATGCCACAAACTTCGTCCCTGGAAAGTGA

Protein Analysis

265

Amino Acids

28.53

Weight (kDa)

5.05

Isoelectric Point (pI)

27.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 66 - 232 4.7e-51 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012847)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30530 AT5G38800
fragaria_vesca FvH4_6g46000
malus_domestica MD09G1078300.v1.1 MD17G1068700.v1.1
prunus_persica Prupe.3G246000_v2.0.a1
pyrus_communis pycom09g00510
rosa_chinensis RchiOBHm_Chr2g0164231
rosa_laevigata RLG00000021446
rosa_multiflora Rmu_co8502197.1_g000001 Rmu_sc0001427.1_g000013
rosa_roxburghii Rroxscaffold_2G00086700
rosa_rugosa Rorug02G0507200
rosa_samantha Rh2AG575500 Rh2BG586200 Rh2CG557100 Rh2DG595800
rosa_wichuraiana Rw2G047640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 84, 160, 423, 652
AclWI GGATC 6 cut(s) 292, 551, 564, 583, 599, 737
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 3 cut(s) 71, 630, 647
AgsI TTSAA 2 cut(s) 15, 394
AjnI CCWGG 3 cut(s) 220, 568, 787
AloI GAACNNNNNNTCC 2 cut(s) 669, 701
AluBI AGCT 2 cut(s) 67, 289
AluI AGCT 2 cut(s) 67, 289
Alw21I GWGCWC 2 cut(s) 69, 133
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 6 cut(s) 292, 551, 564, 583, 599, 737
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 5 cut(s) 37, 85, 151, 396, 424
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 1 cut(s) 215
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 5 cut(s) 152, 176, 402, 536, 710
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 7 cut(s) 97, 104, 224, 236, 307, 389, 643
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 4 cut(s) 176, 402, 536, 710
BamHI GGATCC 1 cut(s) 556
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 3, 331
Bbv12I GWGCWC 2 cut(s) 69, 133
BbvI GCAGC 1 cut(s) 320
BccI CCATC 3 cut(s) 205, 228, 303
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 3 cut(s) 222, 570, 789
BciVI GTATCC 1 cut(s) 512
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 255
BfuI GTATCC 1 cut(s) 512
BisI GCNGC 4 cut(s) 85, 334, 424, 653
BlsI GCNGC 4 cut(s) 86, 335, 425, 654
Bme1390I CCNGG 4 cut(s) 222, 400, 570, 789
Bme18I GGWCC 4 cut(s) 176, 402, 536, 710
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 5 cut(s) 152, 176, 402, 536, 710
BmiI GGNNCC 6 cut(s) 177, 403, 404, 558, 711, 712
BmrFI CCNGG 4 cut(s) 222, 400, 570, 789
BmsI GCATC 1 cut(s) 111
BpiI GAAGAC 2 cut(s) 3, 331
BpmI CTGGAG 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 400
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 4 cut(s) 88, 220, 568, 787
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 3 cut(s) 214, 706, 746
Bse3DI GCAATG 2 cut(s) 321, 666
BseBI CCWGG 3 cut(s) 222, 570, 789
BseDI CCNNGG 4 cut(s) 88, 220, 568, 787
BseGI GGATG 3 cut(s) 69, 197, 239
BseMI GCAATG 2 cut(s) 321, 666
BseNI ACTGG 3 cut(s) 214, 706, 746
BseXI GCAGC 1 cut(s) 320
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 5 cut(s) 39, 87, 153, 398, 426
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 2 cut(s) 69, 133
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 2 cut(s) 36, 399
BslFI GGGAC 5 cut(s) 189, 251, 388, 696, 770
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 5 cut(s) 189, 251, 388, 696, 770
BsnI GGCC 5 cut(s) 39, 87, 153, 398, 426
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 69, 133
Bsp143I GATC 5 cut(s) 297, 556, 575, 604, 742
BspACI CCGC 4 cut(s) 84, 160, 423, 652
BspANI GGCC 5 cut(s) 39, 87, 153, 398, 426
BspLI GGNNCC 6 cut(s) 177, 403, 404, 558, 711, 712
BspMAI CTGCAG 1 cut(s) 259
BspPI GGATC 6 cut(s) 292, 551, 564, 583, 599, 737
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 2 cut(s) 321, 666
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 3 cut(s) 214, 706, 746
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 4 cut(s) 88, 220, 568, 787
BssMI GATC 5 cut(s) 297, 556, 575, 604, 742
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 3 cut(s) 222, 570, 789
Bst4CI ACNGT 4 cut(s) 46, 98, 121, 284
BstC8I GCNNGC 2 cut(s) 37, 657
BstF5I GGATG 3 cut(s) 69, 197, 239
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 5 cut(s) 300, 559, 578, 607, 745
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 5 cut(s) 297, 556, 575, 604, 742
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 3 cut(s) 159, 482, 758
BstNI CCWGG 3 cut(s) 222, 570, 789
BstSCI CCNGG 4 cut(s) 220, 398, 568, 787
BstSFI CTRYAG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 320
BstV2I GAAGAC 2 cut(s) 3, 331
BstX2I RGATCY 1 cut(s) 556
BstXI CCANNNNNNTGG 1 cut(s) 80
BstYI RGATCY 1 cut(s) 556
BsuI GTATCC 1 cut(s) 512
BsuRI GGCC 5 cut(s) 39, 87, 153, 398, 426
BtsCI GGATG 3 cut(s) 69, 197, 239
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 4 cut(s) 117, 240, 699, 753
Cac8I GCNNGC 2 cut(s) 37, 657
CfoI GCGC 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 5 cut(s) 152, 176, 402, 536, 710
CseI GACGC 1 cut(s) 325
CviAII CATG 5 cut(s) 109, 458, 502, 734, 762
DpnI GATC 5 cut(s) 299, 558, 577, 606, 744
DpnII GATC 5 cut(s) 297, 556, 575, 604, 742
EaeI YGGCCR 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 4 cut(s) 176, 402, 536, 710
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 3 cut(s) 71, 630, 647
Eco88I CYCGRG 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 2 cut(s) 402, 710
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 3 cut(s) 220, 568, 787
EcoT14I CCWWGG 1 cut(s) 88
EcoT22I ATGCAT 1 cut(s) 763
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 5 cut(s) 112, 461, 505, 737, 765
FaqI GGGAC 5 cut(s) 189, 251, 388, 696, 770
FatI CATG 5 cut(s) 108, 457, 501, 733, 761
FauNDI CATATG 1 cut(s) 143
Fnu4HI GCNGC 4 cut(s) 85, 334, 424, 653
FokI GGATG 3 cut(s) 56, 184, 246
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 4 cut(s) 85, 334, 424, 653
GlaI GCGC 1 cut(s) 116
GluI GCNGC 4 cut(s) 85, 334, 424, 653
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 5 cut(s) 39, 87, 153, 398, 426
HapII CCGG 2 cut(s) 36, 399
HgaI GACGC 1 cut(s) 325
HhaI GCGC 1 cut(s) 117
Hin1II CATG 5 cut(s) 112, 461, 505, 737, 765
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HinfI GANTC 3 cut(s) 525, 594, 678
HpaII CCGG 2 cut(s) 36, 399
HphI GGTGA 7 cut(s) 97, 104, 224, 236, 307, 389, 643
Hpy188I TCNGA 3 cut(s) 51, 187, 418
Hpy188III TCNNGA 3 cut(s) 134, 554, 608
HpyAV CCTTC 3 cut(s) 542, 622, 628
HpyCH4III ACNGT 4 cut(s) 46, 98, 121, 284
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 3 cut(s) 257, 326, 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 482, 758
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 5 cut(s) 112, 461, 505, 737, 765
HspAI GCGC 1 cut(s) 115
KflI GGGWCCC 2 cut(s) 402, 710
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 5 cut(s) 297, 556, 575, 604, 742
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 1 cut(s) 111
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 3 cut(s) 92, 224, 697
MalI GATC 5 cut(s) 299, 558, 577, 606, 744
MboI GATC 5 cut(s) 297, 556, 575, 604, 742
MboII GAAGA 2 cut(s) 3, 331
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 2 cut(s) 69, 133
MluCI AATT 1 cut(s) 215
MlyI GAGTC 2 cut(s) 534, 588
Mph1103I ATGCAT 1 cut(s) 763
MroNI GCCGGC 1 cut(s) 35
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 107
MspI CCGG 2 cut(s) 36, 399
MspR9I CCNGG 4 cut(s) 222, 400, 570, 789
MvaI CCWGG 3 cut(s) 222, 570, 789
MwoI GCNNNNNNNGC 3 cut(s) 159, 482, 758
NaeI GCCGGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 400
NdeI CATATG 1 cut(s) 143
NdeII GATC 5 cut(s) 297, 556, 575, 604, 742
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 5 cut(s) 112, 461, 505, 737, 765
NlaIV GGNNCC 6 cut(s) 177, 403, 404, 558, 711, 712
NmuCI GTSAC 3 cut(s) 92, 224, 697
NsiI ATGCAT 1 cut(s) 763
PdiI GCCGGC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 678
PkrI GCNGC 4 cut(s) 86, 335, 425, 654
PleI GAGTC 2 cut(s) 533, 588
PpsI GAGTC 2 cut(s) 533, 588
PpuMI RGGWCCY 2 cut(s) 402, 710
Psp124BI GAGCTC 1 cut(s) 69
Psp5II RGGWCCY 2 cut(s) 402, 710
Psp6I CCWGG 3 cut(s) 220, 568, 787
PspGI CCWGG 3 cut(s) 220, 568, 787
PspN4I GGNNCC 6 cut(s) 177, 403, 404, 558, 711, 712
PspPI GGNCC 5 cut(s) 152, 176, 402, 536, 710
PspPPI RGGWCCY 2 cut(s) 402, 710
PstI CTGCAG 1 cut(s) 259
PsuI RGATCY 1 cut(s) 556
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 4 cut(s) 85, 334, 424, 653
Sau3AI GATC 5 cut(s) 297, 556, 575, 604, 742
Sau96I GGNCC 5 cut(s) 152, 176, 402, 536, 710
SchI GAGTC 2 cut(s) 534, 588
ScrFI CCNGG 4 cut(s) 222, 400, 570, 789
SduI GDGCHC 2 cut(s) 69, 133
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 4 cut(s) 176, 402, 536, 710
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 1 cut(s) 215
SsiI CCGC 4 cut(s) 84, 160, 423, 652
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 4 cut(s) 220, 398, 568, 787
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 4 cut(s) 46, 98, 121, 284
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 59
TasI AATT 1 cut(s) 215
TauI GCSGC 3 cut(s) 87, 426, 655
TfiI GAWTC 1 cut(s) 678
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 4 cut(s) 124, 247, 706, 753
TseFI GTSAC 3 cut(s) 92, 224, 697
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 3 cut(s) 92, 224, 697
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 4 cut(s) 124, 247, 706, 753
VpaK11BI GGWCC 4 cut(s) 176, 402, 536, 710
XapI RAATTY 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.