Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0012847

Physical Location & Seq

Genomic Coordinates Forward (+)

410364 .. 410972

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCAGCCCGGTGAGGCCACCGGACTCCATTACCTCGCTCCCTTGAGCTCATCATCTCCCTACCCTCCTCATTTCAGCATGAGCACTCAAGGCAACGCAACTGCGTTTCAATTTAACCGGTTTTCTAGCCCATTGTACAATTTTCAATTCCCTAATTCCCAACTTCAAGAAATTAATAACAATCCACAGCAACCATCCTCGTTCAGTAGTTCAACCTCTGATGAGGCTGATGAGCAGCAACTCAGTCTCATCAACGAGAGGAAACAAAGACGAATGTTATCTAACAGAGAATCTGCGCGCAGATCGCGTATGCGCAAGCAGAAGCACTTGGATGAGCTCTGGTCACAAGTGGTTTGGCTCAGAAATGAGAATCACCAACTTGTGGACAAGCTGAACCATGTCTCAGAGTCCCACGACAAGGTTCTGGAAGAGAATGCTCAGCTCAAAGAGGAAGCTTCTGAGCTTCGCCAAATGGTCAATGACCTGCAACTGCACAGTCCTTATAATTCTTTCCTTCGAGACCTCGAGGATGTCCCATGCAACACAGCTTATCTGAGAATGGAGTCCTCAAACCCGTCCATCACAAGTTCCACGGATTTGCTAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

203

Amino Acids

23.24

Weight (kDa)

5.63

Isoelectric Point (pI)

66.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	86 - 131	2.4e-08	Basic region leucine zipper
bZIP_1	PF00170	87 - 140	1.2e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30530 AT5G38800
fragaria_vesca	FvH4_6g46000
malus_domestica	MD09G1078300.v1.1 MD17G1068700.v1.1
prunus_persica	Prupe.3G246000_v2.0.a1
pyrus_communis	pycom09g00510
rosa_chinensis	RchiOBHm_Chr2g0164231
rosa_laevigata	RLG00000021446
rosa_multiflora	Rmu_co8502197.1_g000001 Rmu_sc0001427.1_g000013
rosa_roxburghii	Rroxscaffold_2G00086700
rosa_rugosa	Rorug02G0507200
rosa_samantha	Rh2AG575500 Rh2BG586200 Rh2CG557100 Rh2DG595800
rosa_wichuraiana	Rw2G047640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AbsI	CCTCGAGG	1 cut(s)	524
Acc16I	TGCGCA	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	492
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccII	CGCG	2 cut(s)	298, 307
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	382, 418
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	110, 146, 167, 213
AluBI	AGCT	7 cut(s)	48, 337, 391, 442, 455, 463, 548
AluI	AGCT	7 cut(s)	48, 337, 391, 442, 455, 463, 548
Alw21I	GWGCWC	3 cut(s)	50, 86, 339
Alw26I	GTCTC	3 cut(s)	251, 406, 513
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	2 cut(s)	4, 235
AseI	ATTAAT	1 cut(s)	174
AsiGI	ACCGGT	1 cut(s)	117
AspLEI	GCGC	3 cut(s)	298, 300, 315
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	23, 365
AvaI	CYCGRG	1 cut(s)	524
BanII	GRGCYC	2 cut(s)	50, 339
Bbv12I	GWGCWC	3 cut(s)	50, 86, 339
BbvI	GCAGC	2 cut(s)	16, 247
BccI	CCATC	2 cut(s)	202, 587
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	3 cut(s)	251, 406, 513
BfaI	CTAG	2 cut(s)	126, 602
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	2 cut(s)	5, 236
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	2 cut(s)	6, 237
Bme1390I	CCNGG	1 cut(s)	9
BmeT110I	CYCGRG	1 cut(s)	524
BmrFI	CCNGG	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	2 cut(s)	64, 72
BpuMI	CCSGG	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	591
BsaWI	WCCGGW	2 cut(s)	20, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 418
Bse118I	RCCGGY	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	3 cut(s)	194, 337, 535
BseLI	CCNNNNNNNGG	2 cut(s)	382, 418
BseMII	CTCAG	6 cut(s)	256, 373, 417, 450, 452, 545
BsePI	GCGCGC	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	16, 247
BsgI	GTGCAG	1 cut(s)	476
Bsh1236I	CGCG	2 cut(s)	298, 307
BshFI	GGCC	1 cut(s)	17
BshTI	ACCGGT	1 cut(s)	117
BsiHKAI	GWGCWC	3 cut(s)	50, 86, 339
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	3 cut(s)	9, 21, 118
BslFI	GGGAC	2 cut(s)	394, 518
BslI	CCNNNNNNNGG	2 cut(s)	382, 418
BsmAI	GTCTC	3 cut(s)	251, 406, 513
BsmFI	GGGAC	2 cut(s)	394, 518
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	513
BsoBI	CYCGRG	1 cut(s)	524
Bsp1286I	GDGCHC	3 cut(s)	50, 86, 339
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	302
Bsp1720I	GCTNAGC	1 cut(s)	438
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	6 cut(s)	255, 372, 416, 451, 451, 546
BspFNI	CGCG	2 cut(s)	298, 307
BspMI	ACCTGC	1 cut(s)	492
BspTNI	GGTCTC	1 cut(s)	513
BsrFI	RCCGGY	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	591
BssHII	GCGCGC	1 cut(s)	296
BssMI	GATC	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	423
BstAUI	TGTACA	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	298, 317
BstDEI	CTNAG	6 cut(s)	242, 359, 403, 438, 459, 554
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	3 cut(s)	194, 337, 535
BstFNI	CGCG	2 cut(s)	298, 307
BstHHI	GCGC	3 cut(s)	298, 300, 315
BstKTI	GATC	1 cut(s)	305
BstMAI	GTCTC	3 cut(s)	251, 406, 513
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 304
BstSCI	CCNGG	1 cut(s)	7
BstUI	CGCG	2 cut(s)	298, 307
BstV1I	GCAGC	2 cut(s)	16, 247
BsuRI	GGCC	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	194, 337, 535
BveI	ACCTGC	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	298, 317
CfoI	GCGC	3 cut(s)	298, 300, 315
Cfr10I	RCCGGY	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	136
CspAI	ACCGGT	1 cut(s)	117
CviAII	CATG	3 cut(s)	79, 398, 537
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	6 cut(s)	242, 359, 403, 438, 459, 554
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Ecl136II	GAGCTC	2 cut(s)	48, 337
Eco24I	GRGCYC	2 cut(s)	50, 339
Eco31I	GGTCTC	1 cut(s)	513
Eco53kI	GAGCTC	2 cut(s)	48, 337
Eco88I	CYCGRG	1 cut(s)	524
EcoICRI	GAGCTC	2 cut(s)	48, 337
EcoT38I	GRGCYC	2 cut(s)	50, 339
FaeI	CATG	3 cut(s)	82, 401, 540
FaiI	YATR	5 cut(s)	80, 311, 399, 504, 538
FaqI	GGGAC	2 cut(s)	394, 518
FatI	CATG	3 cut(s)	78, 397, 536
Fnu4HI	GCNGC	2 cut(s)	5, 236
FokI	GGATG	3 cut(s)	181, 344, 542
FriOI	GRGCYC	2 cut(s)	50, 339
Fsp4HI	GCNGC	2 cut(s)	5, 236
FspBI	CTAG	2 cut(s)	126, 602
FspI	TGCGCA	1 cut(s)	314
GlaI	GCGC	3 cut(s)	297, 299, 314
GluI	GCNGC	2 cut(s)	5, 236
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	3 cut(s)	9, 21, 118
HhaI	GCGC	3 cut(s)	298, 300, 315
Hin1II	CATG	3 cut(s)	82, 401, 540
Hin6I	GCGC	3 cut(s)	296, 298, 313
HinP1I	GCGC	3 cut(s)	296, 298, 313
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	5 cut(s)	24, 290, 370, 407, 563
HpaII	CCGG	3 cut(s)	9, 21, 118
HphI	GGTGA	2 cut(s)	23, 365
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	5 cut(s)	220, 362, 406, 460, 555
Hpy188III	TCNNGA	3 cut(s)	167, 425, 518
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4V	TGCA	4 cut(s)	4, 487, 493, 540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 304
HpyF3I	CTNAG	6 cut(s)	242, 359, 403, 438, 459, 554
Hsp92II	CATG	3 cut(s)	82, 401, 540
HspAI	GCGC	3 cut(s)	296, 298, 313
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	6 cut(s)	22, 34, 131, 325, 410, 497
Lsp1109I	GCAGC	2 cut(s)	16, 247
MaeI	CTAG	2 cut(s)	126, 602
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	1 cut(s)	440
MhlI	GDGCHC	3 cut(s)	50, 86, 339
MluCI	AATT	6 cut(s)	110, 139, 146, 154, 171, 505
MlyI	GAGTC	3 cut(s)	18, 416, 572
MseI	TTAA	2 cut(s)	114, 174
MslI	CAYNNNNRTG	1 cut(s)	330
MspI	CCGG	3 cut(s)	9, 21, 118
MspR9I	CCNGG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	439
MvnI	CGCG	2 cut(s)	298, 307
MwoI	GCNNNNNNNGC	2 cut(s)	90, 304
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	302
NlaIII	CATG	3 cut(s)	82, 401, 540
NmuCI	GTSAC	1 cut(s)	342
NsbI	TGCGCA	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	524
PauI	GCGCGC	1 cut(s)	296
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	2 cut(s)	290, 370
PflMI	CCANNNNNTGG	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	6, 237
PleI	GAGTC	3 cut(s)	18, 415, 571
PpsI	GAGTC	3 cut(s)	18, 415, 571
PshBI	ATTAAT	1 cut(s)	174
PsiI	TTATAA	1 cut(s)	504
Psp124BI	GAGCTC	2 cut(s)	50, 339
PspXI	VCTCGAGB	1 cut(s)	524
PteI	GCGCGC	1 cut(s)	296
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	330
SacI	GAGCTC	2 cut(s)	50, 339
SaqAI	TTAA	2 cut(s)	114, 174
SatI	GCNGC	2 cut(s)	5, 236
Sau3AI	GATC	1 cut(s)	302
SchI	GAGTC	3 cut(s)	18, 416, 572
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	3 cut(s)	50, 86, 339
Sfr274I	CTCGAG	1 cut(s)	524
SlaI	CTCGAG	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	3 cut(s)	43, 87, 524
SmoI	CTYRAG	3 cut(s)	43, 87, 524
Sse9I	AATT	6 cut(s)	110, 139, 146, 154, 171, 505
SspMI	CTAG	2 cut(s)	126, 602
SstI	GAGCTC	2 cut(s)	50, 339
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	497
TaqI	TCGA	2 cut(s)	517, 525
TasI	AATT	6 cut(s)	110, 139, 146, 154, 171, 505
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	290, 370
Tru1I	TTAA	2 cut(s)	114, 174
Tru9I	TTAA	2 cut(s)	114, 174
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	2 cut(s)	4, 235
Tsp45I	GTSAC	1 cut(s)	342
TspGWI	ACGGA	1 cut(s)	608
Van91I	CCANNNNNTGG	1 cut(s)	382
VspI	ATTAAT	1 cut(s)	174
XhoI	CTCGAG	1 cut(s)	524
XspI	CTAG	2 cut(s)	126, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.