Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012847

Physical Location & Seq

Genomic Coordinates Reverse (-)

23738000 .. 23738969

Gene Structure 970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G246000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCAGCCTGGTGAGGTCACAGGGCTCCATTATCTAGTTCCTTCAAGTTCATCATCTCCCTACCCTCCTCATTTTAGCATGAGCACACAAAGCAACACCACCCCATTTCAATTCAACCGGTTTTCGAGCCCATTATACAATTTACAATTCCCTAACTCCCATCTTCAAGAAATTAATAATCCCCAGCAACCATCTTCTTTCAGCAGTAACTCAACTTCTGATGAAGCTGATGAGCACCAGCTAAGTCTCATCAATGAGAGGAAACAGAGAAGAATGATATCTAACAGAGAATCTGCCCGCAGATCACGTATGCGCAAGCAGAAGCACCTGGATGAACTCTGGTCACAAGTGGTTTGGCTCAGAAATGAGAATCACCAACTTGTGGATAAGCTGAACCATGTTTCAGAGTCCCATGACAAGGTTCTGCAAGAGAATGCTCAGCTCAAAGAGCAAGCTTCTGAGCTTCGCCAAATGCTCACTGATCTGCAACTGCATAGTCCTTACCATCCTTCACTTAGAGACCTGGAGGATGTTCCTTGCAACACTGCTTATCTGAGATCCGAGTCCTCGAACCAGTCCATCACAAGTTCAATGGATTTACTAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

203

Amino Acids

23.33

Weight (kDa)

6.19

Isoelectric Point (pI)

75.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30530 AT5G38800
fragaria_vesca	FvH4_6g46000
malus_domestica	MD09G1078300.v1.1 MD17G1068700.v1.1
prunus_persica	Prupe.3G246000_v2.0.a1
pyrus_communis	pycom09g00510
rosa_chinensis	RchiOBHm_Chr2g0164231
rosa_laevigata	RLG00000021446
rosa_multiflora	Rmu_co8502197.1_g000001 Rmu_sc0001427.1_g000013
rosa_roxburghii	Rroxscaffold_2G00086700
rosa_rugosa	Rorug02G0507200
rosa_samantha	Rh2AG575500 Rh2BG586200 Rh2CG557100 Rh2DG595800
rosa_wichuraiana	Rw2G047640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	314
AccB7I	CCANNNNNTGG	1 cut(s)	382
AciI	CCGC	1 cut(s)	298
AclWI	GGATC	1 cut(s)	552
AfiI	CCNNNNNNNGG	2 cut(s)	382, 418
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	5 cut(s)	45, 110, 115, 167, 591
AjnI	CCWGG	3 cut(s)	7, 327, 522
AluBI	AGCT	6 cut(s)	227, 241, 391, 442, 455, 463
AluI	AGCT	6 cut(s)	227, 241, 391, 442, 455, 463
Alw21I	GWGCWC	2 cut(s)	86, 237
Alw26I	GTCTC	2 cut(s)	251, 513
AlwI	GGATC	1 cut(s)	552
ApeKI	GCWGC	1 cut(s)	4
AseI	ATTAAT	1 cut(s)	174
AsiGI	ACCGGT	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	23, 365
BanII	GRGCYC	2 cut(s)	27, 131
BarI	GAAGNNNNNNTAC	2 cut(s)	199, 231
Bbv12I	GWGCWC	2 cut(s)	86, 237
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	4 cut(s)	168, 199, 513, 587
BciT130I	CCWGG	3 cut(s)	9, 329, 524
BcoDI	GTCTC	2 cut(s)	251, 513
BfaI	CTAG	2 cut(s)	35, 602
BisI	GCNGC	1 cut(s)	5
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	3 cut(s)	9, 329, 524
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	3 cut(s)	9, 329, 524
BpmI	CTGGAG	1 cut(s)	545
Bpu1102I	GCTNAGC	1 cut(s)	438
BsaAI	YACGTR	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 418
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	574
BseBI	CCWGG	3 cut(s)	9, 329, 524
BseGI	GGATG	3 cut(s)	337, 505, 535
BseLI	CCNNNNNNNGG	2 cut(s)	382, 418
BseMII	CTCAG	4 cut(s)	373, 450, 452, 545
BseNI	ACTGG	1 cut(s)	574
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	183
BshTI	ACCGGT	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	86, 237
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	2 cut(s)	382, 418
BsmAI	GTCTC	2 cut(s)	251, 513
BsmFI	GGGAC	1 cut(s)	394
BsmI	GAATGC	1 cut(s)	439
Bso31I	GGTCTC	1 cut(s)	513
Bsp1286I	GDGCHC	4 cut(s)	27, 86, 131, 237
Bsp143I	GATC	3 cut(s)	302, 481, 557
Bsp1720I	GCTNAGC	1 cut(s)	438
BspACI	CCGC	1 cut(s)	298
BspCNI	CTCAG	4 cut(s)	372, 451, 451, 546
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	1 cut(s)	552
BspTNI	GGTCTC	1 cut(s)	513
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	574
BssAI	RCCGGY	1 cut(s)	117
BssMI	GATC	3 cut(s)	302, 481, 557
Bst2UI	CCWGG	3 cut(s)	9, 329, 524
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	3 cut(s)	298, 317, 453
BstDEI	CTNAG	6 cut(s)	242, 359, 438, 459, 515, 554
BstF5I	GGATG	3 cut(s)	337, 505, 535
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	3 cut(s)	305, 484, 560
BstMAI	GTCTC	2 cut(s)	251, 513
BstMBI	GATC	3 cut(s)	302, 481, 557
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 448
BstNI	CCWGG	3 cut(s)	9, 329, 524
BstSCI	CCNGG	3 cut(s)	7, 327, 522
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BtsCI	GGATG	3 cut(s)	337, 505, 535
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	2 cut(s)	477, 543
Cac8I	GCNNGC	3 cut(s)	298, 317, 453
CfoI	GCGC	1 cut(s)	315
Cfr10I	RCCGGY	1 cut(s)	117
CspAI	ACCGGT	1 cut(s)	117
CviAII	CATG	3 cut(s)	79, 398, 413
DdeI	CTNAG	6 cut(s)	242, 359, 438, 459, 515, 554
DpnI	GATC	3 cut(s)	304, 483, 559
DpnII	GATC	3 cut(s)	302, 481, 557
Eco24I	GRGCYC	2 cut(s)	27, 131
Eco31I	GGTCTC	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	279
EcoRII	CCWGG	3 cut(s)	7, 327, 522
EcoRV	GATATC	1 cut(s)	279
EcoT38I	GRGCYC	2 cut(s)	27, 131
FaeI	CATG	3 cut(s)	82, 401, 416
FaiI	YATR	6 cut(s)	80, 136, 311, 399, 414, 495
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	3 cut(s)	78, 397, 412
FauI	CCCGC	1 cut(s)	305
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	3 cut(s)	344, 492, 542
FriOI	GRGCYC	2 cut(s)	27, 131
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	35, 602
FspI	TGCGCA	1 cut(s)	314
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	187
GsuI	CTGGAG	1 cut(s)	545
HapII	CCGG	1 cut(s)	118
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	3 cut(s)	82, 401, 416
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	4 cut(s)	290, 370, 407, 563
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	2 cut(s)	23, 365
Hpy188I	TCNGA	6 cut(s)	220, 362, 406, 460, 555, 562
Hpy188III	TCNNGA	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	51, 519
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	5 cut(s)	4, 427, 487, 493, 540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 448
HpyF3I	CTNAG	6 cut(s)	242, 359, 438, 459, 515, 554
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	3 cut(s)	82, 401, 416
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	302, 481, 557
LmnI	GCTCC	1 cut(s)	30
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	35, 602
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	3 cut(s)	16, 206, 342
MalI	GATC	3 cut(s)	304, 483, 559
MboI	GATC	3 cut(s)	302, 481, 557
MboII	GAAGA	3 cut(s)	155, 186, 282
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	4 cut(s)	27, 86, 131, 237
MluCI	AATT	4 cut(s)	110, 139, 146, 171
MlyI	GAGTC	2 cut(s)	416, 572
MnlI	CCTC	6 cut(s)	7, 75, 78, 252, 520, 577
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	330
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	3 cut(s)	9, 329, 524
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	3 cut(s)	9, 329, 524
MwoI	GCNNNNNNNGC	2 cut(s)	90, 448
NdeII	GATC	3 cut(s)	302, 481, 557
NlaIII	CATG	3 cut(s)	82, 401, 416
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	2 cut(s)	16, 342
NsbI	TGCGCA	1 cut(s)	314
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	2 cut(s)	290, 370
PflMI	CCANNNNNTGG	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	2 cut(s)	415, 571
PpsI	GAGTC	2 cut(s)	415, 571
Ppu21I	YACGTR	1 cut(s)	308
PshBI	ATTAAT	1 cut(s)	174
Psp6I	CCWGG	3 cut(s)	7, 327, 522
PspFI	CCCAGC	1 cut(s)	183
PspGI	CCWGG	3 cut(s)	7, 327, 522
PspN4I	GGNNCC	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	557
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	302, 481, 557
SchI	GAGTC	2 cut(s)	416, 572
ScrFI	CCNGG	3 cut(s)	9, 329, 524
SduI	GDGCHC	4 cut(s)	27, 86, 131, 237
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	4 cut(s)	110, 139, 146, 171
SsiI	CCGC	1 cut(s)	298
SspMI	CTAG	2 cut(s)	35, 602
StyD4I	CCNGG	3 cut(s)	7, 327, 522
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	2 cut(s)	125, 569
TasI	AATT	4 cut(s)	110, 139, 146, 171
TfiI	GAWTC	2 cut(s)	290, 370
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	484, 550
TseFI	GTSAC	2 cut(s)	16, 342
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	2 cut(s)	16, 342
TspDTI	ATGAA	3 cut(s)	39, 237, 348
TspRI	CASTG	2 cut(s)	484, 550
Van91I	CCANNNNNTGG	1 cut(s)	382
VspI	ATTAAT	1 cut(s)	174
XspI	CTAG	2 cut(s)	35, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.