Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8502197.1

Orthogroup ID

OG0012847

Physical Location & Seq

Genomic Coordinates Reverse (-)

187 .. 846

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8502197.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgcagcctgatgaggctacagggcttcattacctagtcccttccggttcattatcatctccctacccacctcattttagcatgatgagtactactactcaaagcaacccagccagtgcttttcaattcaaccgattttccgctactccattatacaataattaccaatttccttcccacttagttcctcaagaagttaataacaataataatccccagcaaccatgttccttcagcagtaactcaacctctgacgaagctgatgagcagcaactaagtctcatcaatgagaggaaacagagacgaatgatatccaacagagaatctgcacgtagatcgcgtatgcgcaagcagaagcacctggatgagctctggtcacaggtggtttggctcagaaatgagaatcaccaacttgtggataagctgaatcatgtgtcggagtcccatgacagagttctgcaagagaatgctcagctcaaagaggaggcttctgaactccgccaaatgctgagtgacctgcagctgcatagtcctaattctaactatcatccatccttgagagaccagctggaggtcgatgttccctgcaacacagcttatctgagagcagagtcctcaaaccagcccatcacaacaagttcgatggatttgctaggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

219

Amino Acids

25.12

Weight (kDa)

5.83

Isoelectric Point (pI)

59.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30530 AT5G38800
fragaria_vesca	FvH4_6g46000
malus_domestica	MD09G1078300.v1.1 MD17G1068700.v1.1
prunus_persica	Prupe.3G246000_v2.0.a1
pyrus_communis	pycom09g00510
rosa_chinensis	RchiOBHm_Chr2g0164231
rosa_laevigata	RLG00000021446
rosa_multiflora	Rmu_co8502197.1_g000001 Rmu_sc0001427.1_g000013
rosa_roxburghii	Rroxscaffold_2G00086700
rosa_rugosa	Rorug02G0507200
rosa_samantha	Rh2AG575500 Rh2BG586200 Rh2CG557100 Rh2DG595800
rosa_wichuraiana	Rw2G047640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	525
AccB7I	CCANNNNNTGG	1 cut(s)	415
AccII	CGCG	1 cut(s)	340
AciI	CCGC	2 cut(s)	141, 499
AcuI	CTGAAG	1 cut(s)	217
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	415, 571
AgsI	TTSAA	2 cut(s)	125, 130
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	7 cut(s)	260, 370, 424, 475, 523, 568, 596
AluI	AGCT	7 cut(s)	260, 370, 424, 475, 523, 568, 596
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	3 cut(s)	284, 295, 555
ApeKI	GCWGC	4 cut(s)	4, 268, 520, 523
AspLEI	GCGC	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	4 cut(s)	16, 280, 510, 532
BccI	CCATC	3 cut(s)	559, 635, 637
BcgI	CGANNNNNNTGC	3 cut(s)	318, 352, 631
BciT130I	CCWGG	1 cut(s)	362
BcoDI	GTCTC	3 cut(s)	284, 295, 555
BfaI	CTAG	2 cut(s)	35, 653
BfmI	CTRYAG	2 cut(s)	18, 518
BfuAI	ACCTGC	1 cut(s)	525
BisI	GCNGC	4 cut(s)	5, 269, 521, 524
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	4 cut(s)	6, 270, 522, 525
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	362
BmrFI	CCNGG	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	590
Bpu1102I	GCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	2 cut(s)	174, 577
BsaAI	YACGTR	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	555
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 571
Bse1I	ACTGG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	362
BseGI	GGATG	3 cut(s)	370, 547, 551
BseLI	CCNNNNNNNGG	2 cut(s)	415, 571
BseMII	CTCAG	4 cut(s)	406, 485, 500, 593
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	4 cut(s)	16, 280, 510, 532
BseYI	CCCAGC	2 cut(s)	109, 216
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	23, 427
BslI	CCNNNNNNNGG	2 cut(s)	415, 571
BsmAI	GTCTC	3 cut(s)	284, 295, 555
BsmBI	CGTCTC	1 cut(s)	295
BsmFI	GGGAC	2 cut(s)	23, 427
BsmI	GAATGC	1 cut(s)	472
Bso31I	GGTCTC	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	335
Bsp1720I	GCTNAGC	1 cut(s)	471
BspACI	CCGC	2 cut(s)	141, 499
BspCNI	CTCAG	4 cut(s)	405, 484, 501, 594
BspFNI	CGCG	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	522
BspMI	ACCTGC	1 cut(s)	525
BspTNI	GGTCTC	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	6 cut(s)	181, 275, 392, 471, 509, 602
BstF5I	GGATG	3 cut(s)	370, 547, 551
BstFNI	CGCG	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	1 cut(s)	338
BstMAI	GTCTC	3 cut(s)	284, 295, 555
BstMBI	GATC	1 cut(s)	335
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	2 cut(s)	18, 518
BstUI	CGCG	1 cut(s)	340
BstV1I	GCAGC	4 cut(s)	16, 280, 510, 532
BtsCI	GGATG	3 cut(s)	370, 547, 551
BtsIMutI	CAGTG	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	525
Cac8I	GCNNGC	1 cut(s)	350
CfoI	GCGC	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	4 cut(s)	82, 225, 431, 446
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	6 cut(s)	181, 275, 392, 471, 509, 602
DpnI	GATC	1 cut(s)	337
DpnII	GATC	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	488
Ecl136II	GAGCTC	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	555
Eco32I	GATATC	1 cut(s)	312
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	360
EcoRV	GATATC	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	295
FaeI	CATG	4 cut(s)	85, 228, 434, 449
FaiI	YATR	7 cut(s)	83, 154, 226, 344, 432, 447, 528
FaqI	GGGAC	2 cut(s)	23, 427
FatI	CATG	4 cut(s)	81, 224, 430, 445
Fnu4HI	GCNGC	4 cut(s)	5, 269, 521, 524
FokI	GGATG	3 cut(s)	377, 534, 538
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	4 cut(s)	5, 269, 521, 524
FspBI	CTAG	2 cut(s)	35, 653
FspI	TGCGCA	1 cut(s)	347
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	4 cut(s)	5, 269, 521, 524
GsaI	CCCAGC	2 cut(s)	113, 220
GsuI	CTGGAG	1 cut(s)	590
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	4 cut(s)	85, 228, 434, 449
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	5 cut(s)	323, 403, 427, 440, 611
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	398
Hpy188I	TCNGA	5 cut(s)	253, 395, 439, 493, 603
Hpy188III	TCNNGA	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	51, 183, 241
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	6 cut(s)	4, 329, 460, 520, 526, 588
HpyF3I	CTNAG	6 cut(s)	181, 275, 392, 471, 509, 602
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	4 cut(s)	85, 228, 434, 449
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	335
Lsp1109I	GCAGC	4 cut(s)	16, 280, 510, 532
MaeI	CTAG	2 cut(s)	35, 653
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	3 cut(s)	239, 375, 512
MalI	GATC	1 cut(s)	337
MboI	GATC	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	4 cut(s)	125, 160, 167, 535
MlyI	GAGTC	2 cut(s)	449, 620
MmeI	TCCRAC	2 cut(s)	339, 417
MnlI	CCTC	9 cut(s)	7, 81, 198, 259, 285, 475, 478, 565, 625
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	523, 568
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	362
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	1 cut(s)	340
NdeII	GATC	1 cut(s)	335
NlaIII	CATG	4 cut(s)	85, 228, 434, 449
NmuCI	GTSAC	2 cut(s)	375, 512
NsbI	TGCGCA	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	337
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	323, 403, 427
PflMI	CCANNNNNTGG	1 cut(s)	415
PkrI	GCNGC	4 cut(s)	6, 270, 522, 525
PleI	GAGTC	2 cut(s)	448, 619
PpsI	GAGTC	2 cut(s)	448, 619
Ppu21I	YACGTR	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	360
PspFI	CCCAGC	2 cut(s)	109, 216
PspGI	CCWGG	1 cut(s)	360
PstI	CTGCAG	1 cut(s)	522
PvuII	CAGCTG	2 cut(s)	523, 568
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	4 cut(s)	5, 269, 521, 524
Sau3AI	GATC	1 cut(s)	335
ScaI	AGTACT	1 cut(s)	91
SchI	GAGTC	2 cut(s)	449, 620
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	372
SfcI	CTRYAG	2 cut(s)	18, 518
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	2 cut(s)	189, 556
SmoI	CTYRAG	2 cut(s)	189, 556
Sse9I	AATT	4 cut(s)	125, 160, 167, 535
SsiI	CCGC	2 cut(s)	141, 499
SspMI	CTAG	2 cut(s)	35, 653
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	360
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	576, 641
TasI	AATT	4 cut(s)	125, 160, 167, 535
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	3 cut(s)	323, 403, 427
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	2 cut(s)	375, 512
TseI	GCWGC	4 cut(s)	4, 268, 520, 523
Tsp45I	GTSAC	2 cut(s)	375, 512
TspDTI	ATGAA	2 cut(s)	17, 39
TspRI	CASTG	1 cut(s)	121
Van91I	CCANNNNNTGG	1 cut(s)	415
XspI	CTAG	2 cut(s)	35, 653
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.