AT5G41560

Det1 complexing ubiquitin ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013398
Physical Location & Seq
Reverse (-)
16621197 .. 16622757
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41560.1

Sequence Viewer

Length: 306 bp
ATGGCGTCGATTCTGGGTGATTTGCCTTCCTTTGATCCTCACAATTTCAGTCAACATCGTCCCTCCGATCCTTCTAATCCCTCTAAGATGGTTCCTACCACCTATCGTCCTACTCACAACCGTACACTTCCACCACCAGATCAAGTGATAACTACAGAAGTGAAAAACATTCTTATACGCAGCTTCTATCAACGAGCTGAAGAAAAGTTAAGACCAAAGAGACCGGCTACAGATCATCTGGCAGCGGAGCACGTGAACAAGCATTTCCGTGCTGCGTCTTCTTCTTCATCTACTCAGGGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDA1

Protein Analysis

101

Amino Acids

11.36

Weight (kDa)

9.86

Isoelectric Point (pI)

76.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDA1 PF10172 3 - 68 9.1e-29 Det1 complexing ubiquitin ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41560 AT5G41560
fragaria_vesca FvH4_5g03180 FvH4_5g03180 FvH4_5g03180 FvH4_5g03180
malus_domestica MD06G1090900.v1.1 MD14G1111700.v1.1
prunus_persica Prupe.5G106400_v2.0.a1
pyrus_communis pycom06g08650 pycom14g10650
rosa_chinensis RchiOBHm_Chr7g0196601
rosa_multiflora Rmu_sc0006080.1_g000005
rosa_roxburghii Rroxscaffold_3G00259170
rosa_rugosa Rorug07G0035200 Rorug07G0035300
rosa_samantha Rh7DG160300
rosa_wichuraiana Rw7G013910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 304
AciI CCGC 1 cut(s) 245
AclWI GGATC 2 cut(s) 29, 62
AcuI CTGAAG 1 cut(s) 219
AcvI CACGTG 1 cut(s) 253
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 124
AluBI AGCT 2 cut(s) 183, 197
AluI AGCT 2 cut(s) 183, 197
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 2 cut(s) 29, 62
ApeKI GCWGC 3 cut(s) 180, 242, 272
AsuHPI GGTGA 1 cut(s) 29
BbrPI CACGTG 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 192, 254, 259
BccI CCATC 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 214
BfmI CTRYAG 2 cut(s) 153, 228
BisI GCNGC 3 cut(s) 181, 243, 273
BlsI GCNGC 3 cut(s) 182, 244, 274
BmiI GGNNCC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 223
BseXI GCAGC 3 cut(s) 192, 254, 259
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 45
Bso31I GGTCTC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 4 cut(s) 34, 67, 139, 232
BspACI CCGC 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 29, 62
BspTNI GGTCTC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 223
BssMI GATC 4 cut(s) 34, 67, 139, 232
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 253
BstDEI CTNAG 2 cut(s) 84, 294
BstKTI GATC 4 cut(s) 37, 70, 142, 235
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 4 cut(s) 34, 67, 139, 232
BstSFI CTRYAG 2 cut(s) 153, 228
BstV1I GCAGC 3 cut(s) 192, 254, 259
BstV2I GAAGAC 1 cut(s) 270
Cfr10I RCCGGY 1 cut(s) 223
CseI GACGC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 123
CviJI RGCY 3 cut(s) 183, 197, 227
CviKI_1 RGCY 3 cut(s) 183, 197, 227
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 2 cut(s) 84, 294
DpnI GATC 4 cut(s) 36, 69, 141, 234
DpnII GATC 4 cut(s) 34, 67, 139, 232
Eco31I GGTCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 219
Eco72I CACGTG 1 cut(s) 253
FaiI YATR 2 cut(s) 176, 304
FaqI GGGAC 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 181, 243, 273
Fsp4HI GCNGC 3 cut(s) 181, 243, 273
GluI GCNGC 3 cut(s) 181, 243, 273
HapII CCGG 1 cut(s) 224
HgaI GACGC 1 cut(s) 264
Hin1I GRCGYC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 3 cut(s) 53, 125, 256
Hpy188I TCNGA 1 cut(s) 67
Hpy8I GTNNAC 3 cut(s) 53, 125, 256
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 36, 81
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 252
HpyF3I CTNAG 2 cut(s) 84, 294
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 5
Kzo9I GATC 4 cut(s) 34, 67, 139, 232
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 4 cut(s) 150, 224, 237, 281
Lsp1109I GCAGC 3 cut(s) 192, 254, 259
MaeII ACGT 1 cut(s) 252
MalI GATC 4 cut(s) 36, 69, 141, 234
MboI GATC 4 cut(s) 34, 67, 139, 232
MboII GAAGA 4 cut(s) 212, 270, 273, 276
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 43
MnlI CCTC 3 cut(s) 48, 73, 91
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 1 cut(s) 224
NdeII GATC 4 cut(s) 34, 67, 139, 232
NlaIV GGNNCC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 3 cut(s) 182, 244, 274
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
Ppu21I YACGTR 1 cut(s) 253
PsiI TTATAA 1 cut(s) 304
PspCI CACGTG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 93
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 3 cut(s) 181, 243, 273
Sau3AI GATC 4 cut(s) 34, 67, 139, 232
SduI GDGCHC 1 cut(s) 252
SetI ASST 4 cut(s) 104, 185, 199, 255
SfcI CTRYAG 2 cut(s) 153, 228
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 1 cut(s) 43
SsiI CCGC 1 cut(s) 245
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 43
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseI GCWGC 3 cut(s) 180, 242, 272
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.