FvH4_5g03180

Det1 complexing ubiquitin ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013398
Physical Location & Seq
Reverse (-)
1896892 .. 1899609
2718 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03180.t2

Sequence Viewer

Length: 297 bp
ATGGGTTCTTTGTTCGGCAACTGGCCCTCATATGACCCTCACAACTTCAGCCAGCTCCGACCCTCGGATCCCACTACTCCTTCTAAAATGACTCCTACAACCTATCATGCTACCCACAACCGGACCCTTCCGCCACCCGATCAAGTGATAACTACTGAATCCAAGAACATTCTTCTGAGGCACATGTATCAGCAGCATGCTGAAGAGAAGTTGAGACAAAAGCGAGCTGCATCAGAAAACCTTTTACCAGAGCATGGATCAAAGCAACTTAAGGGTTCTGTCTCAGATAAGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDA1

Protein Analysis

99

Amino Acids

11.12

Weight (kDa)

9.4

Isoelectric Point (pI)

66.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDA1 PF10172 3 - 48 4.1e-17 Det1 complexing ubiquitin ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41560 AT5G41560
fragaria_vesca FvH4_5g03180 FvH4_5g03180 FvH4_5g03180 FvH4_5g03180
malus_domestica MD06G1090900.v1.1 MD14G1111700.v1.1
prunus_persica Prupe.5G106400_v2.0.a1
pyrus_communis pycom06g08650 pycom14g10650
rosa_chinensis RchiOBHm_Chr7g0196601
rosa_multiflora Rmu_sc0006080.1_g000005
rosa_roxburghii Rroxscaffold_3G00259170
rosa_rugosa Rorug07G0035200 Rorug07G0035300
rosa_samantha Rh7DG160300
rosa_wichuraiana Rw7G013910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 254
AciI CCGC 1 cut(s) 131
AclWI GGATC 3 cut(s) 62, 75, 265
AcuI CTGAAG 2 cut(s) 31, 222
AfiI CCNNNNNNNGG 3 cut(s) 64, 120, 254
AflII CTTAAG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 183
AluBI AGCT 2 cut(s) 55, 227
AluI AGCT 2 cut(s) 55, 227
Alw26I GTCTC 2 cut(s) 208, 286
AlwI GGATC 3 cut(s) 62, 75, 265
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 193, 227
AspS9I GGNCC 2 cut(s) 24, 123
AvaII GGWCC 1 cut(s) 123
BamHI GGATCC 1 cut(s) 67
BbvI GCAGC 2 cut(s) 205, 214
BcoDI GTCTC 2 cut(s) 208, 286
BfrI CTTAAG 1 cut(s) 269
BisI GCNGC 2 cut(s) 194, 228
BlsI GCNGC 2 cut(s) 195, 229
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 2 cut(s) 24, 123
BmiI GGNNCC 2 cut(s) 69, 125
BmsI GCATC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 120, 254
Bse1I ACTGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 63
BseLI CCNNNNNNNGG 3 cut(s) 64, 120, 254
BseMII CTCAG 2 cut(s) 167, 297
BseNI ACTGG 1 cut(s) 26
BseXI GCAGC 2 cut(s) 205, 214
BshFI GGCC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 121
BslI CCNNNNNNNGG 3 cut(s) 64, 120, 254
BsmAI GTCTC 2 cut(s) 208, 286
BsnI GGCC 1 cut(s) 25
Bsp143I GATC 3 cut(s) 67, 139, 257
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 2 cut(s) 168, 296
BspLI GGNNCC 2 cut(s) 69, 125
BspPI GGATC 3 cut(s) 62, 75, 265
BspTI CTTAAG 1 cut(s) 269
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 3 cut(s) 67, 139, 257
Bst6I CTCTTC 1 cut(s) 198
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 3 cut(s) 53, 198, 225
BstDEI CTNAG 2 cut(s) 176, 283
BstKTI GATC 3 cut(s) 70, 142, 260
BstMAI GTCTC 2 cut(s) 208, 286
BstMBI GATC 3 cut(s) 67, 139, 257
BstNSI RCATGY 2 cut(s) 187, 200
BstV1I GCAGC 2 cut(s) 205, 214
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 1 cut(s) 25
Cac8I GCNNGC 3 cut(s) 53, 198, 225
Cfr13I GGNCC 2 cut(s) 24, 123
CviAII CATG 4 cut(s) 107, 184, 197, 254
CviJI RGCY 4 cut(s) 25, 51, 55, 227
CviKI_1 RGCY 4 cut(s) 25, 51, 55, 227
DdeI CTNAG 2 cut(s) 176, 283
DpnI GATC 3 cut(s) 69, 141, 259
DpnII GATC 3 cut(s) 67, 139, 257
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 123
Eco57I CTGAAG 2 cut(s) 31, 222
FaeI CATG 4 cut(s) 110, 187, 200, 257
FaiI YATR 6 cut(s) 31, 33, 108, 185, 198, 255
FatI CATG 4 cut(s) 106, 183, 196, 253
FauNDI CATATG 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 194, 228
Fsp4HI GCNGC 2 cut(s) 194, 228
GluI GCNGC 2 cut(s) 194, 228
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 121
Hin1II CATG 4 cut(s) 110, 187, 200, 257
HinfI GANTC 2 cut(s) 91, 158
HpaII CCGG 1 cut(s) 121
Hpy188I TCNGA 5 cut(s) 59, 67, 177, 235, 286
HpyAV CCTTC 2 cut(s) 90, 137
HpyCH4V TGCA 1 cut(s) 230
HpyF3I CTNAG 2 cut(s) 176, 283
Hsp92II CATG 4 cut(s) 110, 187, 200, 257
Kzo9I GATC 3 cut(s) 67, 139, 257
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 4 cut(s) 7, 65, 134, 261
Lsp1109I GCAGC 2 cut(s) 205, 214
LweI GCATC 1 cut(s) 239
MalI GATC 3 cut(s) 69, 141, 259
MboI GATC 3 cut(s) 67, 139, 257
MboII GAAGA 2 cut(s) 164, 215
MflI RGATCY 1 cut(s) 67
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 4 cut(s) 37, 48, 73, 171
MseI TTAA 1 cut(s) 270
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 1 cut(s) 121
NdeI CATATG 1 cut(s) 31
NdeII GATC 3 cut(s) 67, 139, 257
NlaIII CATG 4 cut(s) 110, 187, 200, 257
NlaIV GGNNCC 2 cut(s) 69, 125
NspI RCATGY 2 cut(s) 187, 200
PaeI GCATGC 1 cut(s) 200
PciI ACATGT 1 cut(s) 183
PfeI GAWTC 1 cut(s) 158
PflMI CCANNNNNTGG 1 cut(s) 254
PkrI GCNGC 2 cut(s) 195, 229
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PscI ACATGT 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 69, 125
PspPI GGNCC 2 cut(s) 24, 123
PsuI RGATCY 1 cut(s) 67
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 2 cut(s) 194, 228
Sau3AI GATC 3 cut(s) 67, 139, 257
Sau96I GGNCC 2 cut(s) 24, 123
SchI GAGTC 1 cut(s) 85
SetI ASST 4 cut(s) 57, 104, 229, 243
SfaNI GCATC 1 cut(s) 239
SinI GGWCC 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SphI GCATGC 1 cut(s) 200
SsiI CCGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseI GCWGC 2 cut(s) 193, 227
Van91I CCANNNNNTGG 1 cut(s) 254
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 123
XceI RCATGY 2 cut(s) 187, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.