Prupe.5G106400_v2.0.a1

Det1 complexing ubiquitin ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013398
Physical Location & Seq
Reverse (-)
11251386 .. 11254650
3265 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G106400.1

Sequence Viewer

Length: 303 bp
ATGGGTTCTTTGTTCGGTGACTGGCCGTCATATGACCCTCACAACTTCAGCCAGCTCCGGCCCGCCGATCCTTCCACTCCTTCTAAAATGACACCTGCTACCTATCATCCAACTCACAGCCGGACCCTTCCCCCACCTGATCAAGTGATAACCACCGAAACCAAAAATATTCTTTTGAGGCACATGTATCAGAATGATGAAGAGAAGTTGAGACAAAAGCGAGCTGCATCAGAACATCTTTTACCAGAGCATGGATCCAAGCAACTTAGGGCTTCTGTCTCAGATAATGCAAAACAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDA1

Protein Analysis

101

Amino Acids

11.33

Weight (kDa)

8.11

Isoelectric Point (pI)

71.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41560 AT5G41560
fragaria_vesca FvH4_5g03180 FvH4_5g03180 FvH4_5g03180 FvH4_5g03180
malus_domestica MD06G1090900.v1.1 MD14G1111700.v1.1
prunus_persica Prupe.5G106400_v2.0.a1
pyrus_communis pycom06g08650 pycom14g10650
rosa_chinensis RchiOBHm_Chr7g0196601
rosa_multiflora Rmu_sc0006080.1_g000005
rosa_roxburghii Rroxscaffold_3G00259170
rosa_rugosa Rorug07G0035200 Rorug07G0035300
rosa_samantha Rh7DG160300
rosa_wichuraiana Rw7G013910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 103
AccB7I CCANNNNNTGG 1 cut(s) 251
AciI CCGC 1 cut(s) 63
AclWI GGATC 3 cut(s) 62, 249, 262
AcoI YGGCCR 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 251
AflIII ACRYGT 1 cut(s) 183
AhdI GACNNNNNGTC 1 cut(s) 25
AluBI AGCT 3 cut(s) 55, 224, 299
AluI AGCT 3 cut(s) 55, 224, 299
Alw26I GTCTC 2 cut(s) 205, 283
AlwI GGATC 3 cut(s) 62, 249, 262
AoxI GGCC 2 cut(s) 23, 59
ApeKI GCWGC 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 60, 123
AsuHPI GGTGA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 123
BamHI GGATCC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 10
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 205, 283
BfuAI ACCTGC 1 cut(s) 103
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 123
BmeRI GACNNNNNGTC 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 60, 123
BmiI GGNNCC 2 cut(s) 125, 256
BmsI GCATC 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 2 cut(s) 25, 61
BsiSI CCGG 2 cut(s) 58, 121
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 205, 283
BsnI GGCC 2 cut(s) 25, 61
Bsp143I GATC 3 cut(s) 67, 139, 254
BspACI CCGC 1 cut(s) 63
BspANI GGCC 2 cut(s) 25, 61
BspCNI CTCAG 1 cut(s) 293
BspLI GGNNCC 2 cut(s) 125, 256
BspMI ACCTGC 1 cut(s) 103
BspPI GGATC 3 cut(s) 62, 249, 262
BsrI ACTGG 1 cut(s) 26
BssMI GATC 3 cut(s) 67, 139, 254
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 53, 63, 222
BstDEI CTNAG 2 cut(s) 266, 280
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 3 cut(s) 70, 142, 257
BstMAI GTCTC 2 cut(s) 205, 283
BstMBI GATC 3 cut(s) 67, 139, 254
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 2 cut(s) 25, 61
BtsCI GGATG 1 cut(s) 106
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 3 cut(s) 53, 63, 222
Cfr13I GGNCC 2 cut(s) 60, 123
CviAII CATG 2 cut(s) 184, 251
CviJI RGCY 8 cut(s) 25, 51, 55, 61, 120, 224, 272, 299
CviKI_1 RGCY 8 cut(s) 25, 51, 55, 61, 120, 224, 272, 299
DdeI CTNAG 2 cut(s) 266, 280
DpnI GATC 3 cut(s) 69, 141, 256
DpnII GATC 3 cut(s) 67, 139, 254
DriI GACNNNNNGTC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 195
Eam1105I GACNNNNNGTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 31
FaeI CATG 2 cut(s) 187, 254
FaiI YATR 4 cut(s) 31, 33, 185, 252
FatI CATG 2 cut(s) 183, 250
FauI CCCGC 1 cut(s) 70
FauNDI CATATG 1 cut(s) 31
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 2 cut(s) 25, 61
HapII CCGG 2 cut(s) 58, 121
Hin1II CATG 2 cut(s) 187, 254
HindIII AAGCTT 1 cut(s) 297
HpaII CCGG 2 cut(s) 58, 121
HphI GGTGA 1 cut(s) 29
Hpy188I TCNGA 3 cut(s) 192, 232, 283
HpyAV CCTTC 3 cut(s) 81, 90, 137
HpyCH4V TGCA 2 cut(s) 227, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 266, 280
Hsp92II CATG 2 cut(s) 187, 254
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 3 cut(s) 67, 139, 254
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 7 cut(s) 7, 65, 71, 108, 134, 150, 258
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 17
MalI GATC 3 cut(s) 69, 141, 256
MboI GATC 3 cut(s) 67, 139, 254
MboII GAAGA 1 cut(s) 212
MflI RGATCY 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 2 cut(s) 48, 171
MseI TTAA 1 cut(s) 301
MspI CCGG 2 cut(s) 58, 121
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeI CATATG 1 cut(s) 31
NdeII GATC 3 cut(s) 67, 139, 254
NlaIII CATG 2 cut(s) 187, 254
NlaIV GGNNCC 2 cut(s) 125, 256
NmuCI GTSAC 1 cut(s) 17
NspI RCATGY 1 cut(s) 187
PaqCI CACCTGC 1 cut(s) 103
PciI ACATGT 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 1 cut(s) 226
PscI ACATGT 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 125, 256
PspPI GGNCC 2 cut(s) 60, 123
PsrI GAACNNNNNNTAC 2 cut(s) 225, 257
PsuI RGATCY 1 cut(s) 254
SaqAI TTAA 1 cut(s) 301
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 3 cut(s) 67, 139, 254
Sau96I GGNCC 2 cut(s) 60, 123
SetI ASST 6 cut(s) 57, 97, 104, 139, 226, 301
SfaNI GCATC 1 cut(s) 236
SinI GGWCC 1 cut(s) 123
SsiI CCGC 1 cut(s) 63
SspI AATATT 1 cut(s) 169
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 213
Van91I CCANNNNNTGG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 123
XceI RCATGY 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.