AT5G41890

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015993
Physical Location & Seq
Reverse (-)
16764211 .. 16766702
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41890.1

Sequence Viewer

Length: 1128 bp
ATGGATTTCACTTATAGATGTTCTCTCAAGCCTTTCAATTGCACTTTTCTTCTCCTTTGGCTATCACATTTTCAGGCTGCTCAATCGTTCACAAACTTCATATTTGGAGACTCATTGGTAGATGTTGGAAACAACAACTATATCTTCACATTGTCAAAAGCTGATTCTTCGCCTTATGGCATCGATTTTGCACCTTCCAACGGCCAACCCACGGGAAGATTCACTAATGGTCGAACCATTTCCGATATTGTGGGTGAAGCCTTAGGAGCAAAATCACCACCACCACCATATCTTGAACCAAACACTGAGGCTAACACAATTCGCAATGGAATCAACTATGCTTCTGGTGCTGCTGGAATCTTGGACGACACTGGACTTCTGTTCATCGGGCGAGTTCCGCTGAGAGAACAAGTGAGTAATTTTGAGAAGAGTAGAGAATATATGGTAAGAGTGATTGGTGAAAATGGTACAAAAGAGATGTTGAAGAATGCAATGTTCACAATCACAATTGGATCAAATGATATTTTGAATTATATTCAACCATCAATACCTTTCTTCTCTCAAGACAAGCTCCCCACTGATGTCCTACAAGATTCTATGGTCCTCCATTTAACCACACATCTTAAGCGATTGCATCAGCTAGGAGGTAGGAAGTTCGTGGTGGTTGGAGTAGGGCCACTCGGTTGCATACCCTTTGCTCGAGCGTTGAATTTAATACCAGCCGGAAAATGCTCCGAACAAGTCAACCAAGTAGTCCGAGGTTATAACATGAAGCTTATACACTCTCTTAAGACATTGAACAATGAGTTAAGATCCGAAGATTACAACACTACATTTGTCTACGCCAACTCTTACGACCTATTCTTGAAACTAGTTTTGAACTATCAACTATTTGGCTTGAAGAACGCAGACAAGCCGTGTTGTGGCGGCTACTTTCCACCGTTTGCATGCTTTAAGGGACCTAACCAGAACTCAAGCCAAGCAGCTTGTGAGGACAGGTCCAAGTTTGTCTTCTGGGACGCGTATCACCCAACCGAAGCTGCAAATCTCATTGTTGCCAAAGCACTTCTTGATGGTGACCAAACTGTGGCTACCCCTTTCAACATCCGCTATCTTAACGATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

375

Amino Acids

41.64

Weight (kDa)

6.99

Isoelectric Point (pI)

32.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 33 - 356 1.4e-29 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015993)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41890
fragaria_vesca FvH4_5g10830
malus_domestica MD06G1120400.v1.1
prunus_persica Prupe.5G130900_v2.0.a1
pyrus_communis pycom06g11170
rosa_chinensis RchiOBHm_Chr7g0187331
rosa_laevigata RLG00000004794
rosa_multiflora Rmu_sc0001758.1_g000012
rosa_roxburghii Rroxscaffold_3G00267600
rosa_rugosa Rorug06G0480600.1
rosa_samantha Rh7AG085100 Rh7BG077500 Rh7CG086100 Rh7DG087200
rosa_wichuraiana Rw7G007480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 765
AccB7I CCANNNNNTGG 1 cut(s) 1087
AccI GTMKAC 1 cut(s) 840
AccII CGCG 1 cut(s) 1022
AciI CCGC 3 cut(s) 398, 927, 1108
AclWI GGATC 2 cut(s) 520, 807
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 1 cut(s) 709
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 4 cut(s) 200, 211, 923, 1087
AflII CTTAAG 2 cut(s) 623, 788
AflIII ACRYGT 1 cut(s) 1020
AhlI ACTAGT 1 cut(s) 871
AjuI GAANNNNNNNTTGG 2 cut(s) 995, 1027
AluBI AGCT 6 cut(s) 161, 571, 640, 775, 986, 1040
AluI AGCT 6 cut(s) 161, 571, 640, 775, 986, 1040
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 520, 807
Ama87I CYCGRG 1 cut(s) 699
AoxI GGCC 2 cut(s) 202, 674
ApeKI GCWGC 4 cut(s) 77, 350, 983, 1040
ApoI RAATTY 1 cut(s) 709
Asp700I GAANNNNTTC 1 cut(s) 238
AspS9I GGNCC 4 cut(s) 601, 674, 959, 999
AsuHPI GGTGA 5 cut(s) 266, 267, 470, 1019, 1088
AvaI CYCGRG 1 cut(s) 699
AvaII GGWCC 3 cut(s) 601, 959, 999
AxyI CCTNAGG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 1003
BbvI GCAGC 4 cut(s) 64, 337, 995, 1027
BccI CCATC 2 cut(s) 550, 1067
BceAI ACGGC 2 cut(s) 217, 901
BcoDI GTCTC 1 cut(s) 102
BcuI ACTAGT 1 cut(s) 871
BfaI CTAG 2 cut(s) 641, 872
BfrI CTTAAG 2 cut(s) 623, 788
BisI GCNGC 5 cut(s) 78, 351, 928, 984, 1041
BlsI GCNGC 5 cut(s) 79, 352, 929, 985, 1042
Bme18I GGWCC 3 cut(s) 601, 959, 999
BmeT110I CYCGRG 1 cut(s) 699
BmgT120I GGNCC 4 cut(s) 601, 674, 959, 999
BmiI GGNNCC 1 cut(s) 960
BmsI GCATC 2 cut(s) 189, 643
BpiI GAAGAC 1 cut(s) 1003
BpuEI CTTGAG 3 cut(s) 11, 546, 958
Bsa29I ATCGAT 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 210, 757
Bsc4I CCNNNNNNNGG 4 cut(s) 200, 211, 923, 1087
Bse1I ACTGG 1 cut(s) 376
Bse21I CCTNAGG 1 cut(s) 262
Bse3DI GCAATG 2 cut(s) 331, 498
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 210, 757
BseGI GGATG 1 cut(s) 1104
BseLI CCNNNNNNNGG 4 cut(s) 200, 211, 923, 1087
BseMI GCAATG 2 cut(s) 331, 498
BseMII CTCAG 2 cut(s) 297, 392
BseNI ACTGG 1 cut(s) 376
BseXI GCAGC 4 cut(s) 64, 337, 995, 1027
Bsh1236I CGCG 1 cut(s) 1022
BshFI GGCC 2 cut(s) 204, 676
BshVI ATCGAT 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 699
BsiSI CCGG 1 cut(s) 723
BslFI GGGAC 2 cut(s) 972, 1031
BslI CCNNNNNNNGG 4 cut(s) 200, 211, 923, 1087
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 972, 1031
BsmI GAATGC 1 cut(s) 493
BsnI GGCC 2 cut(s) 204, 676
BsoBI CYCGRG 1 cut(s) 699
Bsp143I GATC 3 cut(s) 512, 812, 1120
BspACI CCGC 3 cut(s) 398, 927, 1108
BspANI GGCC 2 cut(s) 204, 676
BspCNI CTCAG 2 cut(s) 298, 393
BspDI ATCGAT 1 cut(s) 183
BspFNI CGCG 1 cut(s) 1022
BspLI GGNNCC 1 cut(s) 960
BspPI GGATC 2 cut(s) 520, 807
BspTI CTTAAG 2 cut(s) 623, 788
BsrDI GCAATG 2 cut(s) 331, 498
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 210, 757
BssMI GATC 3 cut(s) 512, 812, 1120
Bst4CI ACNGT 2 cut(s) 942, 1087
Bst6I CTCTTC 1 cut(s) 422
BstAFI CTTAAG 2 cut(s) 623, 788
BstC8I GCNNGC 1 cut(s) 949
BstDEI CTNAG 3 cut(s) 262, 306, 401
BstDSI CCRYGG 1 cut(s) 210
BstEII GGTNACC 1 cut(s) 1076
BstF5I GGATG 1 cut(s) 1104
BstFNI CGCG 1 cut(s) 1022
BstKTI GATC 3 cut(s) 515, 815, 1123
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 3 cut(s) 512, 812, 1120
BstMWI GCNNNNNNNGC 3 cut(s) 266, 347, 397
BstNSI RCATGY 1 cut(s) 951
BstPI GGTNACC 1 cut(s) 1076
BstUI CGCG 1 cut(s) 1022
BstV1I GCAGC 4 cut(s) 64, 337, 995, 1027
BstV2I GAAGAC 1 cut(s) 1003
BstX2I RGATCY 1 cut(s) 812
BstYI RGATCY 1 cut(s) 812
Bsu15I ATCGAT 1 cut(s) 183
Bsu36I CCTNAGG 1 cut(s) 262
BsuRI GGCC 2 cut(s) 204, 676
BsuTUI ATCGAT 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 1104
BtsIMutI CAGTG 3 cut(s) 303, 369, 576
Cac8I GCNNGC 1 cut(s) 949
Cfr13I GGNCC 4 cut(s) 601, 674, 959, 999
ClaI ATCGAT 1 cut(s) 183
CseI GACGC 1 cut(s) 1028
Csp6I GTAC 1 cut(s) 468
CviAII CATG 2 cut(s) 769, 948
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 3 cut(s) 262, 306, 401
DpnI GATC 3 cut(s) 514, 814, 1122
DpnII GATC 3 cut(s) 512, 812, 1120
EaeI YGGCCR 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Eco47I GGWCC 3 cut(s) 601, 959, 999
Eco81I CCTNAGG 1 cut(s) 262
Eco88I CYCGRG 1 cut(s) 699
Eco91I GGTNACC 1 cut(s) 1076
EcoO109I RGGNCCY 1 cut(s) 959
EcoO65I GGTNACC 1 cut(s) 1076
FaeI CATG 2 cut(s) 772, 951
FalI AAGNNNNNCTT 4 cut(s) 995, 1027, 1053, 1085
FaqI GGGAC 2 cut(s) 972, 1031
FatI CATG 2 cut(s) 768, 947
FblI GTMKAC 1 cut(s) 840
Fnu4HI GCNGC 5 cut(s) 78, 351, 928, 984, 1041
FokI GGATG 1 cut(s) 1091
Fsp4HI GCNGC 5 cut(s) 78, 351, 928, 984, 1041
FspBI CTAG 2 cut(s) 641, 872
GluI GCNGC 5 cut(s) 78, 351, 928, 984, 1041
HaeIII GGCC 2 cut(s) 204, 676
HapII CCGG 1 cut(s) 723
HgaI GACGC 1 cut(s) 1028
Hin1II CATG 2 cut(s) 772, 951
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 6 cut(s) 110, 164, 219, 330, 357, 593
HpaII CCGG 1 cut(s) 723
HphI GGTGA 5 cut(s) 266, 267, 470, 1019, 1088
Hpy166II GTNNAC 4 cut(s) 90, 498, 745, 841
Hpy188I TCNGA 4 cut(s) 244, 736, 758, 817
Hpy188III TCNNGA 4 cut(s) 293, 563, 865, 1070
Hpy8I GTNNAC 4 cut(s) 90, 498, 745, 841
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 2 cut(s) 942, 1087
HpyCH4V TGCA 7 cut(s) 42, 191, 491, 634, 687, 947, 1043
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 347, 397
HpyF3I CTNAG 3 cut(s) 262, 306, 401
Hsp92II CATG 2 cut(s) 772, 951
Kzo9I GATC 3 cut(s) 512, 812, 1120
LmnI GCTCC 3 cut(s) 266, 576, 737
LpnPI CCDG 9 cut(s) 59, 330, 339, 357, 732, 736, 980, 982, 1000
Lsp1109I GCAGC 4 cut(s) 64, 337, 995, 1027
LweI GCATC 2 cut(s) 189, 643
MaeI CTAG 2 cut(s) 641, 872
MaeIII GTNAC 1 cut(s) 1076
MalI GATC 3 cut(s) 514, 814, 1122
MboI GATC 3 cut(s) 512, 812, 1120
MfeI CAATTG 2 cut(s) 37, 507
MflI RGATCY 1 cut(s) 812
MluCI AATT 6 cut(s) 37, 318, 418, 507, 529, 709
MluI ACGCGT 1 cut(s) 1020
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 3 cut(s) 106, 222, 646
MnlI CCTC 5 cut(s) 301, 614, 638, 752, 985
MroXI GAANNNNTTC 1 cut(s) 238
MseI TTAA 8 cut(s) 611, 624, 713, 789, 809, 954, 1116, 1126
MspA1I CMGCKG 1 cut(s) 400
MspCI CTTAAG 2 cut(s) 623, 788
MspI CCGG 1 cut(s) 723
MunI CAATTG 2 cut(s) 37, 507
Mva1269I GAATGC 1 cut(s) 493
MvnI CGCG 1 cut(s) 1022
MwoI GCNNNNNNNGC 3 cut(s) 266, 347, 397
NdeII GATC 3 cut(s) 512, 812, 1120
NlaIII CATG 2 cut(s) 772, 951
NlaIV GGNNCC 1 cut(s) 960
NmuCI GTSAC 1 cut(s) 1076
NspI RCATGY 1 cut(s) 951
PaeI GCATGC 1 cut(s) 951
PaeR7I CTCGAG 1 cut(s) 699
PctI GAATGC 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 238
PfeI GAWTC 5 cut(s) 164, 219, 330, 357, 593
PflMI CCANNNNNTGG 1 cut(s) 1087
PkrI GCNGC 5 cut(s) 79, 352, 929, 985, 1042
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 959
PsiI TTATAA 1 cut(s) 765
Psp5II RGGWCCY 1 cut(s) 959
PspEI GGTNACC 1 cut(s) 1076
PspN4I GGNNCC 1 cut(s) 960
PspPI GGNCC 4 cut(s) 601, 674, 959, 999
PspPPI RGGWCCY 1 cut(s) 959
PspXI VCTCGAGB 1 cut(s) 699
PsuI RGATCY 1 cut(s) 812
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
SaqAI TTAA 8 cut(s) 611, 624, 713, 789, 809, 954, 1116, 1126
SatI GCNGC 5 cut(s) 78, 351, 928, 984, 1041
Sau3AI GATC 3 cut(s) 512, 812, 1120
Sau96I GGNCC 4 cut(s) 601, 674, 959, 999
SchI GAGTC 1 cut(s) 104
SfaNI GCATC 2 cut(s) 189, 643
Sfr274I CTCGAG 1 cut(s) 699
SinI GGWCC 3 cut(s) 601, 959, 999
SlaI CTCGAG 1 cut(s) 699
SmlI CTYRAG 6 cut(s) 26, 561, 623, 699, 788, 973
SmoI CTYRAG 6 cut(s) 26, 561, 623, 699, 788, 973
SpeI ACTAGT 1 cut(s) 871
SphI GCATGC 1 cut(s) 951
Sse9I AATT 6 cut(s) 37, 318, 418, 507, 529, 709
SsiI CCGC 3 cut(s) 398, 927, 1108
SspMI CTAG 2 cut(s) 641, 872
TaaI ACNGT 2 cut(s) 942, 1087
TaqI TCGA 3 cut(s) 183, 232, 700
TasI AATT 6 cut(s) 37, 318, 418, 507, 529, 709
TauI GCSGC 1 cut(s) 930
TfiI GAWTC 5 cut(s) 164, 219, 330, 357, 593
Tru1I TTAA 8 cut(s) 611, 624, 713, 789, 809, 954, 1116, 1126
Tru9I TTAA 8 cut(s) 611, 624, 713, 789, 809, 954, 1116, 1126
TscAI CASTG 3 cut(s) 310, 376, 583
TseFI GTSAC 1 cut(s) 1076
TseI GCWGC 4 cut(s) 77, 350, 983, 1040
Tsp45I GTSAC 1 cut(s) 1076
TspDTI ATGAA 3 cut(s) 88, 373, 785
TspRI CASTG 3 cut(s) 310, 376, 583
Van91I CCANNNNNTGG 1 cut(s) 1087
Vha464I CTTAAG 2 cut(s) 623, 788
VpaK11BI GGWCC 3 cut(s) 601, 959, 999
XapI RAATTY 1 cut(s) 709
XceI RCATGY 1 cut(s) 951
XhoI CTCGAG 1 cut(s) 699
XmiI GTMKAC 1 cut(s) 840
XmnI GAANNNNTTC 1 cut(s) 238
XspI CTAG 2 cut(s) 641, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.