FvH4_5g10830

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015993
Physical Location & Seq
Reverse (-)
6120731 .. 6123512
2782 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10830.t1

Sequence Viewer

Length: 1122 bp
ATGACAATGGAGGTCCATCAGAAAACTCAGTACATTCTTCTGTGTGCAGTTCTCGTTGTTCTTTGTTTGGAGGCCTCCCTTTGCTTTGCTTTCACTTCGTTTGTGTTTGGGGACTCTCTGGTTGATGCAGGAAACAATGACTACATCTTCACGCTCTCGAAAGCCGACTCTCCTCCTTATGGCATCGATTTTAAGGCTTCCGGTGGACGACCCACCGGTAGATTCACAAATGGTCGAACCATATCGGACATCATAGGTCAAGAACTTGGAGCCAAATCATTTCCACCACCTTATCTAGCCCCAGACACTGAAGCCAGCTCAATTCTCAGAGGAATTAACTATGCATCTGGAGCCTCCGGAATATTAGATAAAACAGGGTTTTTGTTTATTGGAAGAGTCCCACTGCGTGAGCAAGTTAATAATTTCGAGCAAAGCAGAAGTTACATGGTAAATGTAATGGGAGAGATAAGCACCAGAGAATTTCTAAAGAAGGCAATCTTCTCGCTCACAATTGGATCCAACGATGTTCTCAACTATGTCCAACCGTCAATACCATTTTTTGCTCAAGACAAAGTCTCACCCAACATGTTTCAAGATTTCATGGTCTCTAACTTGACACAGCAACTCAAGCGTCTGCACGAGTTGGGAGCTAGAAAGTTCATTGTGGTTGGAGTTGGACCATTGGGTTGCATACCCTTCATTCGTGCCATTAATCTTTTACCAAATGGTCACTGCTTTGGTGAAGTGAATGATTTGATCCAAGGTTACAATAAGAAACTCAATGGAGTTTTGGATCAACTGAACCAGGAGTTGGGTCCTGAAGCAATCTTTGTGTATGCAAATTCCTATGACATCTTCATGGAGATCATAGTTAATTATCATCAATATGGGTTTATGGATGCCGATGCACCGTGTTGTGGCGGATACTTTCCACCATTCGTTTGCTTCATGAGCAGGAATTCAAGCTCTTCCCTGTGTGGTGATCGATCCAAGTATGTGTTTTGGGATGCTTACCATCCAACAGAGGCTGCTAATGTCATCATAGCTAAGAGGTTGCTTGATGGAGATGAAAGTATTTGCTCACCTATTAATATCCGGGAGCTTTATAACTACAACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

374

Amino Acids

41.38

Weight (kDa)

5.32

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 34 - 352 8.6e-33 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015993)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41890
fragaria_vesca FvH4_5g10830
malus_domestica MD06G1120400.v1.1
prunus_persica Prupe.5G130900_v2.0.a1
pyrus_communis pycom06g11170
rosa_chinensis RchiOBHm_Chr7g0187331
rosa_laevigata RLG00000004794
rosa_multiflora Rmu_sc0001758.1_g000012
rosa_roxburghii Rroxscaffold_3G00267600
rosa_rugosa Rorug06G0480600.1
rosa_samantha Rh7AG085100 Rh7BG077500 Rh7CG086100 Rh7DG087200
rosa_wichuraiana Rw7G007480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1107
AccB7I CCANNNNNTGG 1 cut(s) 811
AccIII TCCGGA 1 cut(s) 356
AciI CCGC 1 cut(s) 921
AclWI GGATC 5 cut(s) 510, 523, 751, 801, 981
AcsI RAATTY 3 cut(s) 479, 841, 958
AcuI CTGAAG 2 cut(s) 330, 840
AdeI CACNNNGTG 1 cut(s) 407
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 3 cut(s) 179, 811, 917
AflIII ACRYGT 1 cut(s) 585
AgeI ACCGGT 1 cut(s) 215
AgsI TTSAA 2 cut(s) 593, 963
AjnI CCWGG 1 cut(s) 804
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
AluBI AGCT 5 cut(s) 318, 650, 966, 1046, 1102
AluI AGCT 5 cut(s) 318, 650, 966, 1046, 1102
Alw26I GTCTC 2 cut(s) 580, 610
AlwI GGATC 5 cut(s) 510, 523, 751, 801, 981
AlwNI CAGNNNCTG 2 cut(s) 308, 1028
Aor13HI TCCGGA 1 cut(s) 356
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 1028
ApoI RAATTY 3 cut(s) 479, 841, 958
AseI ATTAAT 2 cut(s) 711, 1089
AsiGI ACCGGT 1 cut(s) 215
AspS9I GGNCC 3 cut(s) 13, 677, 815
AsuC2I CCSGG 1 cut(s) 1097
AsuHPI GGTGA 4 cut(s) 570, 752, 992, 1074
AvaII GGWCC 3 cut(s) 13, 677, 815
BamHI GGATCC 1 cut(s) 515
BauI CACGAG 1 cut(s) 638
BbvI GCAGC 1 cut(s) 1015
BccI CCATC 3 cut(s) 24, 1023, 1055
BcgI CGANNNNNNTGC 2 cut(s) 483, 517
BciT130I CCWGG 1 cut(s) 806
BciVI GTATCC 1 cut(s) 917
BcnI CCSGG 1 cut(s) 1097
BcoDI GTCTC 2 cut(s) 580, 610
BfaI CTAG 2 cut(s) 296, 651
BfuI GTATCC 1 cut(s) 917
BisI GCNGC 1 cut(s) 1029
BlsI GCNGC 1 cut(s) 1030
Bme1390I CCNGG 2 cut(s) 806, 1097
Bme18I GGWCC 3 cut(s) 13, 677, 815
BmgT120I GGNCC 3 cut(s) 13, 677, 815
BmiI GGNNCC 4 cut(s) 271, 352, 517, 816
BmrFI CCNGG 2 cut(s) 806, 1097
BmsI GCATC 6 cut(s) 115, 192, 353, 889, 895, 997
BpmI CTGGAG 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 549, 611
BpuMI CCSGG 1 cut(s) 1097
Bsa29I ATCGAT 2 cut(s) 186, 985
BsaI GGTCTC 1 cut(s) 610
BsaJI CCNNGG 1 cut(s) 760
BsaWI WCCGGW 3 cut(s) 200, 215, 356
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 811, 917
Bse118I RCCGGY 1 cut(s) 215
BseAI TCCGGA 1 cut(s) 356
BseBI CCWGG 1 cut(s) 806
BseCI ATCGAT 2 cut(s) 186, 985
BseDI CCNNGG 1 cut(s) 760
BseGI GGATG 3 cut(s) 904, 1012, 1015
BseLI CCNNNNNNNGG 3 cut(s) 179, 811, 917
BseMII CTCAG 2 cut(s) 41, 340
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 1015
BsgI GTGCAG 2 cut(s) 66, 620
BshFI GGCC 1 cut(s) 74
BshTI ACCGGT 1 cut(s) 215
BshVI ATCGAT 2 cut(s) 186, 985
BsiSI CCGG 4 cut(s) 201, 216, 357, 1096
BslFI GGGAC 2 cut(s) 125, 383
BslI CCNNNNNNNGG 3 cut(s) 179, 811, 917
BsmAI GTCTC 2 cut(s) 580, 610
BsmFI GGGAC 2 cut(s) 125, 383
BsnI GGCC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 610
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 6 cut(s) 515, 756, 793, 864, 982, 986
BspACI CCGC 1 cut(s) 921
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 40, 339
BspDI ATCGAT 2 cut(s) 186, 985
BspEI TCCGGA 1 cut(s) 356
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 4 cut(s) 271, 352, 517, 816
BspPI GGATC 5 cut(s) 510, 523, 751, 801, 981
BspQI GCTCTTC 1 cut(s) 973
BspTNI GGTCTC 1 cut(s) 610
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 760
BssMI GATC 6 cut(s) 515, 756, 793, 864, 982, 986
BssSI CACGAG 1 cut(s) 638
BssT1I CCWWGG 1 cut(s) 760
Bst2BI CACGAG 1 cut(s) 638
Bst2UI CCWGG 1 cut(s) 806
Bst4CI ACNGT 2 cut(s) 546, 912
Bst6I CTCTTC 2 cut(s) 388, 973
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 4 cut(s) 27, 326, 1047, 1119
BstF5I GGATG 3 cut(s) 904, 1012, 1015
BstKTI GATC 6 cut(s) 518, 759, 796, 867, 985, 989
BstMAI GTCTC 2 cut(s) 580, 610
BstMBI GATC 6 cut(s) 515, 756, 793, 864, 982, 986
BstMWI GCNNNNNNNGC 3 cut(s) 350, 628, 951
BstNI CCWGG 1 cut(s) 806
BstNSI RCATGY 1 cut(s) 589
BstSCI CCNGG 2 cut(s) 804, 1095
BstV1I GCAGC 1 cut(s) 1015
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
Bsu15I ATCGAT 2 cut(s) 186, 985
BsuI GTATCC 1 cut(s) 917
BsuRI GGCC 1 cut(s) 74
BsuTUI ATCGAT 2 cut(s) 186, 985
BtsCI GGATG 3 cut(s) 904, 1012, 1015
BtsI GCAGTG 2 cut(s) 401, 730
BtsIMutI CAGTG 3 cut(s) 306, 401, 730
Cac8I GCNNGC 1 cut(s) 316
CaiI CAGNNNCTG 2 cut(s) 308, 1028
CciI TCATGA 1 cut(s) 948
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 3 cut(s) 13, 677, 815
ClaI ATCGAT 2 cut(s) 186, 985
CseI GACGC 1 cut(s) 620
Csp6I GTAC 1 cut(s) 31
CspAI ACCGGT 1 cut(s) 215
CviAII CATG 5 cut(s) 445, 586, 601, 859, 949
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 4 cut(s) 27, 326, 1047, 1119
DpnI GATC 6 cut(s) 517, 758, 795, 866, 984, 988
DpnII GATC 6 cut(s) 515, 756, 793, 864, 982, 986
DraIII CACNNNGTG 1 cut(s) 407
Eam1104I CTCTTC 2 cut(s) 388, 973
EarI CTCTTC 2 cut(s) 388, 973
EciI GGCGGA 1 cut(s) 936
Eco130I CCWWGG 1 cut(s) 760
Eco147I AGGCCT 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 610
Eco47I GGWCC 3 cut(s) 13, 677, 815
Eco57I CTGAAG 2 cut(s) 330, 840
EcoO109I RGGNCCY 1 cut(s) 815
EcoRI GAATTC 1 cut(s) 958
EcoRII CCWGG 1 cut(s) 804
EcoT14I CCWWGG 1 cut(s) 760
EcoT22I ATGCAT 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 760
FaeI CATG 5 cut(s) 448, 589, 604, 862, 952
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FaqI GGGAC 2 cut(s) 125, 383
FatI CATG 5 cut(s) 444, 585, 600, 858, 948
Fnu4HI GCNGC 1 cut(s) 1029
FokI GGATG 3 cut(s) 911, 1002, 1019
Fsp4HI GCNGC 1 cut(s) 1029
FspBI CTAG 2 cut(s) 296, 651
GluI GCNGC 1 cut(s) 1029
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 1 cut(s) 74
HapII CCGG 4 cut(s) 201, 216, 357, 1096
HgaI GACGC 1 cut(s) 620
Hin1II CATG 5 cut(s) 448, 589, 604, 862, 952
HinfI GANTC 4 cut(s) 113, 167, 222, 396
HpaII CCGG 4 cut(s) 201, 216, 357, 1096
HphI GGTGA 4 cut(s) 570, 752, 992, 1074
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 21, 247, 329
Hpy188III TCNNGA 8 cut(s) 157, 260, 348, 357, 566, 593, 818, 949
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 2 cut(s) 484, 706
HpyCH4III ACNGT 2 cut(s) 546, 912
HpyCH4V TGCA 7 cut(s) 47, 128, 344, 637, 690, 839, 908
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 628, 951
HpyF3I CTNAG 4 cut(s) 27, 326, 1047, 1119
Hsp92II CATG 5 cut(s) 448, 589, 604, 862, 952
Kpn2I TCCGGA 1 cut(s) 356
Kzo9I GATC 6 cut(s) 515, 756, 793, 864, 982, 986
LguI GCTCTTC 1 cut(s) 973
LmnI GCTCC 4 cut(s) 269, 350, 647, 1099
Lsp1109I GCAGC 1 cut(s) 1015
LweI GCATC 6 cut(s) 115, 192, 353, 889, 895, 997
MaeI CTAG 2 cut(s) 296, 651
MaeIII GTNAC 3 cut(s) 440, 728, 764
MalI GATC 6 cut(s) 517, 758, 795, 866, 984, 988
MboI GATC 6 cut(s) 515, 756, 793, 864, 982, 986
MboII GAAGA 6 cut(s) 29, 139, 405, 490, 847, 960
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 1 cut(s) 515
MluCI AATT 8 cut(s) 321, 333, 421, 479, 510, 841, 874, 958
MlyI GAGTC 3 cut(s) 107, 161, 405
MmeI TCCRAC 5 cut(s) 543, 565, 649, 655, 1043
MnlI CCTC 8 cut(s) 4, 64, 85, 183, 323, 364, 1018, 1044
Mph1103I ATGCAT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 356
MseI TTAA 6 cut(s) 192, 336, 417, 711, 873, 1089
MslI CAYNNNNRTG 2 cut(s) 857, 885
MspI CCGG 4 cut(s) 201, 216, 357, 1096
MspR9I CCNGG 2 cut(s) 806, 1097
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 1 cut(s) 806
MwoI GCNNNNNNNGC 3 cut(s) 350, 628, 951
NciI CCSGG 1 cut(s) 1097
NdeII GATC 6 cut(s) 515, 756, 793, 864, 982, 986
NlaIII CATG 5 cut(s) 448, 589, 604, 862, 952
NlaIV GGNNCC 4 cut(s) 271, 352, 517, 816
NmuCI GTSAC 1 cut(s) 728
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 1 cut(s) 589
PagI TCATGA 1 cut(s) 948
PceI AGGCCT 1 cut(s) 74
PciI ACATGT 1 cut(s) 585
PciSI GCTCTTC 1 cut(s) 973
PfeI GAWTC 1 cut(s) 222
PflFI GACNNNGTC 1 cut(s) 572
PflMI CCANNNNNTGG 1 cut(s) 811
PfoI TCCNGGA 1 cut(s) 1095
PinAI ACCGGT 1 cut(s) 215
PkrI GCNGC 1 cut(s) 1030
PleI GAGTC 3 cut(s) 107, 161, 404
PpsI GAGTC 3 cut(s) 107, 161, 404
PpuMI RGGWCCY 1 cut(s) 815
PscI ACATGT 1 cut(s) 585
PshBI ATTAAT 2 cut(s) 711, 1089
PsiI TTATAA 1 cut(s) 1107
Psp5II RGGWCCY 1 cut(s) 815
Psp6I CCWGG 1 cut(s) 804
PspGI CCWGG 1 cut(s) 804
PspN4I GGNNCC 4 cut(s) 271, 352, 517, 816
PspPI GGNCC 3 cut(s) 13, 677, 815
PspPPI RGGWCCY 1 cut(s) 815
PstNI CAGNNNCTG 2 cut(s) 308, 1028
PsuI RGATCY 1 cut(s) 515
PsyI GACNNNGTC 1 cut(s) 572
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 2 cut(s) 857, 885
SapI GCTCTTC 1 cut(s) 973
SaqAI TTAA 6 cut(s) 192, 336, 417, 711, 873, 1089
SatI GCNGC 1 cut(s) 1029
Sau3AI GATC 6 cut(s) 515, 756, 793, 864, 982, 986
Sau96I GGNCC 3 cut(s) 13, 677, 815
SchI GAGTC 3 cut(s) 107, 161, 405
ScrFI CCNGG 2 cut(s) 806, 1097
SfaNI GCATC 6 cut(s) 115, 192, 353, 889, 895, 997
SinI GGWCC 3 cut(s) 13, 677, 815
SmiMI CAYNNNNRTG 2 cut(s) 857, 885
SmlI CTYRAG 2 cut(s) 564, 626
SmoI CTYRAG 2 cut(s) 564, 626
Sse9I AATT 8 cut(s) 321, 333, 421, 479, 510, 841, 874, 958
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 1 cut(s) 921
SspI AATATT 1 cut(s) 363
SspMI CTAG 2 cut(s) 296, 651
StuI AGGCCT 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 804, 1095
StyI CCWWGG 1 cut(s) 760
TaaI ACNGT 2 cut(s) 546, 912
TaqI TCGA 5 cut(s) 158, 186, 235, 426, 985
TasI AATT 8 cut(s) 321, 333, 421, 479, 510, 841, 874, 958
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 1 cut(s) 222
Tru1I TTAA 6 cut(s) 192, 336, 417, 711, 873, 1089
Tru9I TTAA 6 cut(s) 192, 336, 417, 711, 873, 1089
TscAI CASTG 3 cut(s) 313, 408, 737
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 1 cut(s) 1028
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 6 cut(s) 589, 649, 688, 847, 937, 1083
TspRI CASTG 3 cut(s) 313, 408, 737
Tth111I GACNNNGTC 1 cut(s) 572
Van91I CCANNNNNTGG 1 cut(s) 811
VpaK11BI GGWCC 3 cut(s) 13, 677, 815
VspI ATTAAT 2 cut(s) 711, 1089
XapI RAATTY 3 cut(s) 479, 841, 958
XceI RCATGY 1 cut(s) 589
XspI CTAG 2 cut(s) 296, 651
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.